Wall clock time and date at job start Tue Mar 31 2020 23:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48494 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47030 * 299.99870 * 3 2 1 6 6 H 1.48498 * 109.47191 * 60.00081 * 3 2 1 7 7 C 1.38814 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00036 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99495 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46814 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46933 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.49428 * 54.93628 * 12 11 10 14 14 C 1.53042 * 109.49617 * 175.00150 * 12 11 10 15 15 C 1.53042 * 109.52585 * 181.35521 * 14 12 11 16 16 C 1.53194 * 109.31212 * 298.61463 * 15 14 12 17 17 N 1.46928 * 108.76430 * 54.65709 * 16 15 14 18 18 C 1.34771 * 120.63174 * 126.40813 * 17 16 15 19 19 O 1.21549 * 120.00479 * 176.26133 * 18 17 16 20 20 C 1.47885 * 119.99678 * 356.25420 * 18 17 16 21 21 N 1.32842 * 119.71831 * 40.08902 * 20 18 17 22 22 C 1.31377 * 121.68583 * 179.97438 * 21 20 18 23 23 C 1.38996 * 120.93152 * 359.97438 * 22 21 20 24 24 F 1.35104 * 120.32859 * 179.97438 * 23 22 21 25 25 C 1.38719 * 119.34864 * 0.02562 * 23 22 21 26 26 C 1.38846 * 118.44480 * 359.72934 * 25 23 22 27 27 F 1.35096 * 120.48565 * 180.28703 * 26 25 23 28 28 C 1.46928 * 118.73903 * 306.38047 * 17 16 15 29 29 H 0.96998 * 119.99324 * 359.97438 * 1 2 3 30 30 H 0.96991 * 120.00413 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47138 * 60.00049 * 10 9 7 32 32 H 1.09002 * 109.47211 * 299.99509 * 10 9 7 33 33 H 1.09004 * 109.47014 * 60.00235 * 11 10 9 34 34 H 1.09000 * 109.47503 * 299.99638 * 11 10 9 35 35 H 1.09002 * 109.46083 * 301.37094 * 14 12 11 36 36 H 1.09002 * 109.46072 * 61.34006 * 14 12 11 37 37 H 1.09002 * 109.49662 * 58.58191 * 15 14 12 38 38 H 1.09004 * 109.49484 * 178.67521 * 15 14 12 39 39 H 1.08996 * 109.59780 * 294.86743 * 16 15 14 40 40 H 1.08999 * 109.58140 * 174.43421 * 16 15 14 41 41 H 1.07998 * 119.53259 * 180.02562 * 22 21 20 42 42 H 1.07991 * 120.78216 * 180.02562 * 25 23 22 43 43 H 1.08998 * 109.58647 * 293.82486 * 28 17 16 44 44 H 1.08998 * 109.58555 * 173.39944 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 6 1.8287 -6.1448 0.0005 13 1 2.5224 -6.1647 0.8411 14 6 0.8395 -7.3057 0.1269 15 6 1.6063 -8.6297 0.1603 16 6 2.3842 -8.7979 -1.1487 17 7 3.2319 -7.6149 -1.3501 18 6 4.5553 -7.7474 -1.5679 19 8 5.2342 -6.7664 -1.8006 20 6 5.1814 -9.0864 -1.5237 21 7 4.5471 -10.1277 -2.0512 22 6 5.0676 -11.3339 -2.0338 23 6 6.3113 -11.5671 -1.4587 24 9 6.8348 -12.8126 -1.4471 25 6 7.0094 -10.5087 -0.8959 26 6 6.4370 -9.2443 -0.9336 27 9 7.0833 -8.1833 -0.4030 28 6 2.6093 -6.2846 -1.3101 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6847 -3.7145 0.8906 32 1 2.6846 -3.7146 -0.8895 33 1 0.4367 -4.7621 -0.8886 34 1 0.4374 -4.7618 0.8914 35 1 0.2655 -7.1952 1.0469 36 1 0.1619 -7.2999 -0.7269 37 1 2.3021 -8.6261 0.9993 38 1 0.9030 -9.4547 0.2739 39 1 1.6852 -8.8924 -1.9797 40 1 3.0087 -9.6893 -1.0906 41 1 4.5216 -12.1556 -2.4732 42 1 7.9776 -10.6636 -0.4434 43 1 1.9288 -6.1741 -2.1543 44 1 3.3824 -5.5178 -1.3586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267888898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:35 Heat of formation + Delta-G solvation = -71.840091 kcal Electronic energy + Delta-G solvation = -29125.710370 eV Core-core repulsion = 24714.597849 eV Total energy + Delta-G solvation = -4411.112521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.80226 -49.57137 -41.22295 -39.70751 -37.84785 -35.36541 -33.72932 -32.98887 -32.19209 -31.60535 -30.56148 -27.53745 -26.36249 -24.88140 -24.35093 -23.95528 -22.56522 -21.18640 -20.58926 -19.70782 -18.88114 -18.79119 -17.80366 -17.03007 -16.94963 -16.55359 -16.42859 -15.96611 -15.67563 -15.35034 -15.01084 -14.90874 -14.72320 -14.36979 -13.97839 -13.84732 -13.67548 -13.55344 -13.41583 -13.12328 -13.04917 -12.93932 -12.71021 -12.11256 -11.40311 -11.18094 -11.13547 -11.04380 -10.83355 -10.80272 -10.62853 -10.50792 -10.42769 -10.20251 -10.00677 -9.85300 -9.61285 -9.58850 -8.80637 -8.76871 -6.84974 -5.70725 -2.98727 -0.25006 0.12220 2.13012 2.51428 2.78964 3.01391 3.29496 3.48162 3.53936 3.54219 3.56552 3.84835 3.87641 4.26951 4.56538 4.65957 4.70522 4.77963 4.80362 4.88067 4.95853 5.01757 5.17714 5.36511 5.45571 5.60593 5.62915 5.64275 5.71622 5.74026 5.78977 5.91311 5.98370 6.05854 6.22152 6.24720 6.34706 6.46072 6.49746 6.74636 6.92812 6.96014 7.13397 7.77873 7.82894 8.48846 9.59772 10.18399 10.53080 11.52492 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002304 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.611838 B =12152.178073 C =13242.196218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.118 4.118 12 C -0.096 4.096 13 H 0.074 0.926 14 C -0.116 4.116 15 C -0.137 4.137 16 C 0.099 3.901 17 N -0.588 5.588 18 C 0.570 3.430 19 O -0.513 6.513 20 C 0.047 3.953 21 N -0.396 5.396 22 C 0.062 3.938 23 C 0.101 3.899 24 F -0.115 7.115 25 C -0.154 4.154 26 C 0.139 3.861 27 F -0.098 7.098 28 C 0.113 3.887 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.017 0.983 32 H 0.021 0.979 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.185 0.815 42 H 0.169 0.831 43 H 0.075 0.925 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.714 -31.608 -2.119 32.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.213 4.213 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.116 4.116 13 H 0.092 0.908 14 C -0.153 4.153 15 C -0.175 4.175 16 C -0.023 4.023 17 N -0.319 5.319 18 C 0.354 3.646 19 O -0.387 6.387 20 C -0.093 4.093 21 N -0.106 5.106 22 C -0.100 4.100 23 C 0.079 3.921 24 F -0.093 7.093 25 C -0.181 4.181 26 C 0.116 3.884 27 F -0.076 7.076 28 C -0.008 4.008 29 H 0.063 0.937 30 H 0.216 0.784 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.202 0.798 42 H 0.187 0.813 43 H 0.093 0.907 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.448 -30.764 -2.608 32.009 hybrid contribution 1.178 0.618 0.522 1.429 sum 9.627 -30.146 -2.086 31.714 Atomic orbital electron populations 1.69677 1.05090 1.25423 1.58269 1.24746 0.95553 0.97697 1.03275 0.86110 0.78865 0.84115 0.77134 1.20517 1.21886 1.21914 1.19311 0.91118 0.84213 1.41999 0.91124 1.42380 1.05856 1.00128 1.89458 1.20723 0.93571 0.85584 0.97884 1.21732 0.98644 0.92802 1.02465 1.21473 0.97264 0.95304 0.97514 0.90762 1.21609 0.97711 0.93422 1.02608 1.21981 0.99451 0.98531 0.97573 1.22165 0.94321 0.88183 0.97667 1.47967 1.06259 1.08736 1.68980 1.17523 0.82440 0.86271 0.78352 1.90903 1.62002 1.37845 1.47989 1.21517 0.92282 0.95092 1.00374 1.67936 1.31743 0.98104 1.12833 1.23173 0.92288 0.95674 0.98820 1.18729 0.93760 0.80389 0.99203 1.91599 1.86105 1.37590 1.94054 1.21697 1.03194 0.90327 1.02840 1.18269 0.90596 0.84324 0.95251 1.91673 1.79887 1.53531 1.82549 1.21956 0.97977 0.82940 0.97894 0.93655 0.78360 0.96509 0.96126 0.91676 0.91445 0.91371 0.91504 0.91794 0.90681 0.90709 0.88105 0.79798 0.81310 0.90709 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.03 13.06 55.49 0.72 -28.31 16 2 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 3 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.73 -19.37 5.60 -59.90 -0.34 -19.71 16 10 C 0.15 3.13 6.02 -4.04 -0.02 3.11 16 11 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16 12 C -0.10 -1.24 2.33 -90.49 -0.21 -1.45 16 13 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.12 -1.16 5.17 -26.69 -0.14 -1.30 16 15 C -0.14 -1.14 6.08 -26.61 -0.16 -1.31 16 16 C 0.10 0.89 6.02 -3.71 -0.02 0.87 16 17 N -0.59 -7.17 2.97 -173.87 -0.52 -7.69 16 18 C 0.57 7.86 7.32 -12.31 -0.09 7.77 16 19 O -0.51 -9.03 15.67 5.32 0.08 -8.94 16 20 C 0.05 0.49 6.01 -82.96 -0.50 0.00 16 21 N -0.40 -3.26 7.27 -9.70 -0.07 -3.33 16 22 C 0.06 0.33 11.17 -17.47 -0.20 0.14 16 23 C 0.10 0.56 7.35 -39.12 -0.29 0.27 16 24 F -0.12 -0.63 17.28 2.25 0.04 -0.59 16 25 C -0.15 -0.97 10.14 -39.18 -0.40 -1.37 16 26 C 0.14 1.33 7.27 -38.84 -0.28 1.05 16 27 F -0.10 -1.17 16.24 2.25 0.04 -1.13 16 28 C 0.11 1.54 5.32 -3.71 -0.02 1.52 16 29 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.44 6.70 -51.93 -0.35 0.10 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.82 4.57 -51.93 -0.24 0.58 16 41 H 0.19 0.40 8.06 -52.49 -0.42 -0.03 16 42 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.10 1.65 5.75 -51.93 -0.30 1.36 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -34.49 367.82 -8.04 -42.53 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.82 Total: 3.83 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.70 Total: -0.35 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.20 Total: -59.03 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.08 Total: -1.72 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.49 -8.04 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267888898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.308 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds