Wall clock time and date at job start Tue Mar 31 2020 23:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48494 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47030 * 299.99870 * 3 2 1 6 6 H 1.48498 * 109.47191 * 60.00081 * 3 2 1 7 7 C 1.38814 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00036 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99495 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46814 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46933 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.49428 * 54.93628 * 12 11 10 14 14 C 1.53042 * 109.49617 * 175.00150 * 12 11 10 15 15 C 1.53042 * 109.52585 * 181.35521 * 14 12 11 16 16 C 1.53194 * 109.31212 * 298.61463 * 15 14 12 17 17 N 1.46928 * 108.76430 * 54.65709 * 16 15 14 18 18 C 1.34771 * 120.63174 * 126.40813 * 17 16 15 19 19 O 1.21549 * 120.00479 * 176.26133 * 18 17 16 20 20 C 1.47885 * 119.99678 * 356.25420 * 18 17 16 21 21 N 1.32842 * 119.71831 * 40.08902 * 20 18 17 22 22 C 1.31377 * 121.68583 * 179.97438 * 21 20 18 23 23 C 1.38996 * 120.93152 * 359.97438 * 22 21 20 24 24 F 1.35104 * 120.32859 * 179.97438 * 23 22 21 25 25 C 1.38719 * 119.34864 * 0.02562 * 23 22 21 26 26 C 1.38846 * 118.44480 * 359.72934 * 25 23 22 27 27 F 1.35096 * 120.48565 * 180.28703 * 26 25 23 28 28 C 1.46928 * 118.73903 * 306.38047 * 17 16 15 29 29 H 0.96998 * 119.99324 * 359.97438 * 1 2 3 30 30 H 0.96991 * 120.00413 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47138 * 60.00049 * 10 9 7 32 32 H 1.09002 * 109.47211 * 299.99509 * 10 9 7 33 33 H 1.09004 * 109.47014 * 60.00235 * 11 10 9 34 34 H 1.09000 * 109.47503 * 299.99638 * 11 10 9 35 35 H 1.09002 * 109.46083 * 301.37094 * 14 12 11 36 36 H 1.09002 * 109.46072 * 61.34006 * 14 12 11 37 37 H 1.09002 * 109.49662 * 58.58191 * 15 14 12 38 38 H 1.09004 * 109.49484 * 178.67521 * 15 14 12 39 39 H 1.08996 * 109.59780 * 294.86743 * 16 15 14 40 40 H 1.08999 * 109.58140 * 174.43421 * 16 15 14 41 41 H 1.07998 * 119.53259 * 180.02562 * 22 21 20 42 42 H 1.07991 * 120.78216 * 180.02562 * 25 23 22 43 43 H 1.08998 * 109.58647 * 293.82486 * 28 17 16 44 44 H 1.08998 * 109.58555 * 173.39944 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 6 1.8287 -6.1448 0.0005 13 1 2.5224 -6.1647 0.8411 14 6 0.8395 -7.3057 0.1269 15 6 1.6063 -8.6297 0.1603 16 6 2.3842 -8.7979 -1.1487 17 7 3.2319 -7.6149 -1.3501 18 6 4.5553 -7.7474 -1.5679 19 8 5.2342 -6.7664 -1.8006 20 6 5.1814 -9.0864 -1.5237 21 7 4.5471 -10.1277 -2.0512 22 6 5.0676 -11.3339 -2.0338 23 6 6.3113 -11.5671 -1.4587 24 9 6.8348 -12.8126 -1.4471 25 6 7.0094 -10.5087 -0.8959 26 6 6.4370 -9.2443 -0.9336 27 9 7.0833 -8.1833 -0.4030 28 6 2.6093 -6.2846 -1.3101 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6847 -3.7145 0.8906 32 1 2.6846 -3.7146 -0.8895 33 1 0.4367 -4.7621 -0.8886 34 1 0.4374 -4.7618 0.8914 35 1 0.2655 -7.1952 1.0469 36 1 0.1619 -7.2999 -0.7269 37 1 2.3021 -8.6261 0.9993 38 1 0.9030 -9.4547 0.2739 39 1 1.6852 -8.8924 -1.9797 40 1 3.0087 -9.6893 -1.0906 41 1 4.5216 -12.1556 -2.4732 42 1 7.9776 -10.6636 -0.4434 43 1 1.9288 -6.1741 -2.1543 44 1 3.3824 -5.5178 -1.3586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267888898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:34 Heat of formation + Delta-G solvation = -93.986227 kcal Electronic energy + Delta-G solvation = -29126.670699 eV Core-core repulsion = 24714.597849 eV Total energy + Delta-G solvation = -4412.072850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.34860 -50.26323 -42.00133 -40.53176 -38.93734 -36.99986 -35.13027 -33.77765 -33.37727 -32.45561 -32.05881 -29.06472 -27.24149 -25.93235 -25.51714 -24.78965 -24.02283 -22.30715 -21.83317 -20.64230 -19.51856 -19.41431 -19.17124 -18.55235 -17.77427 -17.28163 -17.14596 -16.74118 -16.60536 -16.54293 -16.21775 -15.83972 -15.57282 -15.53821 -15.33598 -15.14344 -14.79366 -14.59592 -14.47805 -14.24325 -14.15252 -13.91636 -13.68103 -13.35543 -12.99944 -12.84140 -12.58369 -12.31204 -12.11072 -12.00701 -11.91727 -11.79886 -11.65635 -11.61880 -11.22365 -11.13041 -10.95319 -10.72861 -10.24828 -9.74098 -9.03502 -7.98948 -5.28069 -0.88534 -0.40954 1.27647 1.44371 1.45559 1.56232 1.64223 2.11763 2.41479 2.53168 2.69347 2.84098 3.25653 3.34038 3.36429 3.61081 3.73100 3.80940 3.87950 4.08092 4.10824 4.17000 4.25479 4.31398 4.40180 4.50115 4.56226 4.60044 4.67313 4.71723 4.85463 4.88968 4.92139 5.04759 5.09192 5.18386 5.24212 5.31411 5.36925 5.44009 5.46691 5.50664 6.12424 6.22772 6.24498 6.83779 7.30186 8.05272 8.30434 9.24702 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002304 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.611838 B =12152.178073 C =13242.196218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.746 5.746 10 C 0.149 3.851 11 C -0.103 4.103 12 C -0.084 4.084 13 H 0.063 0.937 14 C -0.111 4.111 15 C -0.130 4.130 16 C 0.096 3.904 17 N -0.585 5.585 18 C 0.560 3.440 19 O -0.568 6.568 20 C 0.028 3.972 21 N -0.403 5.403 22 C 0.081 3.919 23 C 0.117 3.883 24 F -0.107 7.107 25 C -0.140 4.140 26 C 0.117 3.883 27 F -0.121 7.121 28 C 0.115 3.885 29 H 0.253 0.747 30 H 0.376 0.624 31 H 0.009 0.991 32 H 0.014 0.986 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.225 0.775 42 H 0.192 0.808 43 H 0.081 0.919 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.571 -34.918 -2.207 36.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.389 5.389 10 C 0.023 3.977 11 C -0.142 4.142 12 C -0.104 4.104 13 H 0.081 0.919 14 C -0.149 4.149 15 C -0.168 4.168 16 C -0.025 4.025 17 N -0.316 5.316 18 C 0.347 3.653 19 O -0.447 6.447 20 C -0.109 4.109 21 N -0.114 5.114 22 C -0.082 4.082 23 C 0.095 3.905 24 F -0.086 7.086 25 C -0.167 4.167 26 C 0.094 3.906 27 F -0.100 7.100 28 C -0.007 4.007 29 H 0.062 0.938 30 H 0.208 0.792 31 H 0.027 0.973 32 H 0.032 0.968 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.132 0.868 41 H 0.242 0.758 42 H 0.210 0.790 43 H 0.099 0.901 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.301 -34.123 -2.683 35.220 hybrid contribution 1.262 1.473 0.517 2.008 sum 9.564 -32.649 -2.166 34.090 Atomic orbital electron populations 1.69818 1.06467 1.26148 1.59355 1.25590 0.96539 1.01100 1.03483 0.85059 0.78005 0.79626 0.76997 1.19527 1.21598 1.21493 1.19646 0.91323 0.85641 1.41519 0.91341 1.42579 1.05700 1.01220 1.89393 1.20862 0.94423 0.85508 0.96952 1.21589 0.97577 0.92310 1.02694 1.21345 0.97432 0.95048 0.96605 0.91888 1.21589 0.97081 0.92765 1.03464 1.21963 0.99591 0.98415 0.96814 1.22446 0.94318 0.87159 0.98614 1.48088 1.06337 1.09085 1.68046 1.18093 0.82616 0.87224 0.77392 1.90856 1.63253 1.40033 1.50576 1.21030 0.92951 0.94297 1.02631 1.67914 1.31961 0.98447 1.13030 1.23806 0.92079 0.95326 0.96950 1.18695 0.93528 0.80227 0.98096 1.91634 1.86010 1.37079 1.93832 1.21876 1.03872 0.88990 1.01960 1.18489 0.90691 0.84958 0.96481 1.91611 1.80301 1.54878 1.83162 1.21768 0.97050 0.83332 0.98569 0.93807 0.79204 0.97264 0.96822 0.91339 0.91173 0.90604 0.90484 0.92410 0.87503 0.89317 0.86788 0.75850 0.79030 0.90061 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.93 13.06 21.65 0.28 -60.64 16 2 C -0.07 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.97 48.23 29.55 68.60 2.03 50.26 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.25 -14.91 9.99 84.03 0.84 -14.07 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.75 -40.55 5.60 -343.44 -1.92 -42.48 16 10 C 0.15 6.49 6.02 86.38 0.52 7.01 16 11 C -0.10 -3.35 4.80 30.60 0.15 -3.20 16 12 C -0.08 -2.19 2.33 -10.71 -0.03 -2.21 16 13 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 14 C -0.11 -2.01 5.17 30.62 0.16 -1.85 16 15 C -0.13 -1.81 6.08 30.67 0.19 -1.62 16 16 C 0.10 1.52 6.02 86.36 0.52 2.04 16 17 N -0.59 -14.44 2.97 -822.27 -2.44 -16.88 16 18 C 0.56 16.22 7.32 86.80 0.64 16.86 16 19 O -0.57 -21.77 15.67 -3.87 -0.06 -21.83 16 20 C 0.03 0.59 6.01 41.88 0.25 0.84 16 21 N -0.40 -5.77 7.27 -184.60 -1.34 -7.11 16 22 C 0.08 0.57 11.17 84.94 0.95 1.52 16 23 C 0.12 0.90 7.35 22.57 0.17 1.06 16 24 F -0.11 -0.75 17.28 44.97 0.78 0.03 16 25 C -0.14 -1.50 10.14 22.53 0.23 -1.27 16 26 C 0.12 2.23 7.27 22.75 0.17 2.40 16 27 F -0.12 -3.07 16.24 44.97 0.73 -2.34 16 28 C 0.11 3.24 5.32 86.36 0.46 3.70 16 29 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.38 21.15 7.67 -92.71 -0.71 20.44 16 31 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.01 0.63 6.70 -2.39 -0.02 0.61 16 33 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.11 1.55 4.57 -2.39 -0.01 1.54 16 41 H 0.23 -0.25 8.06 -2.91 -0.02 -0.28 16 42 H 0.19 1.06 8.06 -2.92 -0.02 1.03 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.07 2.34 5.75 -2.39 -0.01 2.32 16 Total: -1.00 -78.37 367.82 4.05 -74.32 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.33 Total: 19.51 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.67 Total: 7.16 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -5.43 Total: -127.11 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 1.51 Total: -2.31 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -78.37 4.05 -74.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267888898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.663 kcal (2) G-P(sol) polarization free energy of solvation -78.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds