Wall clock time and date at job start Tue Mar 31 2020 23:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99732 * 2 1 4 4 H 1.48505 * 109.46946 * 269.99782 * 3 2 1 5 5 H 1.48499 * 109.47378 * 29.99851 * 3 2 1 6 6 H 1.48497 * 109.47050 * 150.00130 * 3 2 1 7 7 C 1.38809 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99596 * 163.07295 * 7 2 1 9 9 N 1.36928 * 120.00020 * 343.07421 * 7 2 1 10 10 C 1.46928 * 120.63123 * 331.84805 * 9 7 2 11 11 C 1.53195 * 108.77458 * 233.58790 * 10 9 7 12 12 C 1.53040 * 109.31048 * 305.36106 * 11 10 9 13 13 C 1.53002 * 109.46169 * 181.38787 * 12 11 10 14 14 C 1.52995 * 109.47749 * 174.97406 * 13 12 11 15 15 N 1.46500 * 109.47627 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00169 * 180.02562 * 15 14 13 17 17 O 1.21554 * 119.99843 * 359.97438 * 16 15 14 18 18 C 1.47881 * 119.99888 * 180.02562 * 16 15 14 19 19 N 1.32842 * 119.71893 * 0.02562 * 18 16 15 20 20 C 1.31368 * 121.68612 * 179.97438 * 19 18 16 21 21 C 1.39011 * 120.93276 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.32846 * 180.02562 * 21 20 19 23 23 C 1.38718 * 119.33898 * 359.97438 * 21 20 19 24 24 C 1.38826 * 118.45297 * 359.97438 * 23 21 20 25 25 F 1.35097 * 120.48914 * 179.97438 * 24 23 21 26 26 C 1.53036 * 109.52672 * 61.37743 * 12 11 10 27 27 C 1.46927 * 120.63253 * 151.82326 * 9 7 2 28 28 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58762 * 113.79874 * 10 9 7 30 30 H 1.09002 * 109.70367 * 353.43944 * 10 9 7 31 31 H 1.09006 * 109.49649 * 185.41529 * 11 10 9 32 32 H 1.08995 * 109.49987 * 65.31339 * 11 10 9 33 33 H 1.08993 * 109.46546 * 301.35627 * 12 11 10 34 34 H 1.09002 * 109.47149 * 54.97266 * 13 12 11 35 35 H 1.09012 * 109.47057 * 294.97823 * 13 12 11 36 36 H 1.09002 * 109.46910 * 59.99712 * 14 13 12 37 37 H 1.09000 * 109.46802 * 300.00485 * 14 13 12 38 38 H 0.97000 * 119.99842 * 0.02562 * 15 14 13 39 39 H 1.07995 * 119.53664 * 180.28620 * 20 19 18 40 40 H 1.08007 * 120.76923 * 179.97438 * 23 21 20 41 41 H 1.09000 * 109.50165 * 58.57657 * 26 12 11 42 42 H 1.09009 * 109.49736 * 178.67639 * 26 12 11 43 43 H 1.08999 * 109.59058 * 246.19813 * 27 9 7 44 44 H 1.09001 * 109.58511 * 6.48599 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2224 -0.2718 9 7 1.3701 -2.3621 0.3463 10 6 0.2261 -2.3398 1.2679 11 6 0.4975 -3.3188 2.4146 12 6 0.8120 -4.7005 1.8366 13 6 1.0497 -5.6892 2.9797 14 6 1.2402 -7.0951 2.4070 15 7 1.4684 -8.0417 3.5016 16 6 1.6637 -9.3479 3.2332 17 8 1.6500 -9.7407 2.0829 18 6 1.8934 -10.3035 4.3381 19 7 1.9057 -9.8684 5.5932 20 6 2.1057 -10.6832 6.6041 21 6 2.3141 -12.0418 6.3964 22 9 2.5180 -12.8689 7.4450 23 6 2.3095 -12.5400 5.1018 24 6 2.0946 -11.6556 4.0535 25 9 2.0823 -12.0963 2.7765 26 6 2.0676 -4.6169 0.9656 27 6 1.8139 -3.6528 -0.1977 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6770 -2.6404 0.7368 30 1 0.0967 -1.3344 1.6688 31 1 -0.3832 -3.3837 3.0537 32 1 1.3471 -2.9672 2.9997 33 1 -0.0280 -5.0407 1.2311 34 1 0.1900 -5.6833 3.6499 35 1 1.9431 -5.3979 3.5323 36 1 2.0998 -7.1010 1.7369 37 1 0.3469 -7.3863 1.8545 38 1 1.4789 -7.7283 4.4195 39 1 2.1040 -10.2928 7.6110 40 1 2.4694 -13.5915 4.9138 41 1 2.9024 -4.2529 1.5646 42 1 2.3046 -5.6058 0.5731 43 1 1.0403 -4.0606 -0.8483 44 1 2.7333 -3.5130 -0.7663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267945001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:48 Heat of formation + Delta-G solvation = -76.545334 kcal Electronic energy + Delta-G solvation = -28279.793027 eV Core-core repulsion = 23868.476471 eV Total energy + Delta-G solvation = -4411.316556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.84324 -49.56047 -40.99138 -39.36797 -37.96478 -35.50184 -33.71813 -33.08325 -31.78219 -31.10480 -29.92789 -28.54884 -25.84081 -24.96987 -24.27737 -23.05898 -22.03266 -21.19150 -20.71420 -19.09534 -18.91952 -18.80378 -18.29076 -16.98211 -16.76045 -16.57648 -16.10388 -16.06836 -15.57345 -15.53847 -15.06034 -14.79748 -14.40576 -14.16110 -13.98908 -13.78864 -13.58973 -13.46448 -13.27690 -13.12572 -12.80810 -12.54297 -12.20774 -11.57286 -11.32262 -11.19569 -10.96826 -10.87010 -10.66427 -10.61342 -10.46594 -10.30842 -10.13361 -10.12308 -9.82783 -9.68388 -9.43682 -9.36786 -9.15030 -8.42837 -6.61039 -5.74945 -3.16779 -0.34522 0.10848 2.09613 2.60954 2.98450 3.03231 3.28095 3.39225 3.41907 3.46113 3.48672 3.81449 3.97785 4.33033 4.52966 4.68890 4.85322 4.94594 4.99438 5.06245 5.31210 5.41662 5.48607 5.61904 5.67562 5.76823 5.79693 6.02715 6.05522 6.13033 6.23435 6.31467 6.41650 6.59211 6.68113 6.69664 6.75359 6.87336 6.90750 7.06548 7.24940 7.42833 7.70891 7.83252 7.86296 8.49817 9.26156 9.90081 10.47331 11.33518 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.001783 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.166834 B =15701.206987 C =16158.656248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.074 4.074 13 C -0.125 4.125 14 C 0.115 3.885 15 N -0.703 5.703 16 C 0.565 3.435 17 O -0.518 6.518 18 C 0.038 3.962 19 N -0.401 5.401 20 C 0.067 3.933 21 C 0.105 3.895 22 F -0.114 7.114 23 C -0.158 4.158 24 C 0.145 3.855 25 F -0.093 7.093 26 C -0.130 4.130 27 C 0.144 3.856 28 H 0.253 0.747 29 H 0.016 0.984 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.410 0.590 39 H 0.185 0.815 40 H 0.169 0.831 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.016 0.984 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -25.337 15.905 30.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.094 4.094 13 C -0.163 4.163 14 C -0.008 4.008 15 N -0.354 5.354 16 C 0.349 3.651 17 O -0.393 6.393 18 C -0.102 4.102 19 N -0.111 5.111 20 C -0.096 4.096 21 C 0.082 3.918 22 F -0.093 7.093 23 C -0.185 4.185 24 C 0.122 3.878 25 F -0.071 7.071 26 C -0.169 4.169 27 C 0.018 3.982 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.246 0.754 39 H 0.202 0.798 40 H 0.187 0.813 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.806 -24.571 15.127 28.990 hybrid contribution 0.582 -0.237 0.380 0.734 sum 3.388 -24.807 15.506 29.450 Atomic orbital electron populations 1.70034 1.05247 1.25388 1.54169 1.25041 0.95278 0.98372 1.01118 0.86324 0.79158 0.83771 0.77690 1.21444 1.21601 1.20540 1.19173 0.92499 0.84902 1.41374 0.91829 1.44051 1.35908 1.01519 1.50083 1.20758 0.88604 0.98129 0.88038 1.22221 0.99927 0.95334 0.99849 1.20971 0.98510 0.94830 0.95052 1.21918 1.02210 0.92814 0.99380 1.21670 1.02378 0.87836 0.88886 1.45896 1.70936 1.06704 1.11913 1.17492 0.78310 0.82489 0.86854 1.90900 1.50423 1.78049 1.19938 1.21588 1.04238 0.91665 0.92667 1.67708 1.08449 1.37076 0.97871 1.23101 0.98775 0.87791 0.99899 1.18769 0.99618 0.89426 0.83952 1.91603 1.91601 1.71194 1.54866 1.21720 1.03631 1.02731 0.90405 1.18316 0.97586 0.91529 0.80410 1.91686 1.92340 1.89208 1.33873 1.22127 0.97102 0.98902 0.98802 1.20902 0.97484 0.86971 0.92851 0.93711 0.96569 0.89616 0.93429 0.92730 0.91637 0.91593 0.91399 0.90550 0.91059 0.75391 0.79783 0.81320 0.92398 0.93071 0.96590 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 11.19 55.49 0.62 -25.78 16 2 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.94 2.99 -172.31 -0.52 -15.45 16 10 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 11 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 12 C -0.07 -1.17 2.15 -90.58 -0.19 -1.37 16 13 C -0.13 -1.51 4.80 -26.73 -0.13 -1.64 16 14 C 0.11 1.37 5.43 -4.04 -0.02 1.35 16 15 N -0.70 -7.60 5.54 -61.24 -0.34 -7.94 16 16 C 0.57 6.96 7.80 -12.31 -0.10 6.87 16 17 O -0.52 -8.13 15.31 5.32 0.08 -8.05 16 18 C 0.04 0.37 6.75 -82.96 -0.56 -0.19 16 19 N -0.40 -3.14 9.53 -9.70 -0.09 -3.23 16 20 C 0.07 0.35 11.17 -17.46 -0.20 0.16 16 21 C 0.10 0.55 7.35 -39.12 -0.29 0.27 16 22 F -0.11 -0.60 17.28 2.25 0.04 -0.56 16 23 C -0.16 -0.92 10.14 -39.19 -0.40 -1.32 16 24 C 0.14 1.28 7.31 -38.84 -0.28 1.00 16 25 F -0.09 -1.02 15.54 2.25 0.04 -0.99 16 26 C -0.13 -2.21 5.14 -26.61 -0.14 -2.35 16 27 C 0.14 3.05 6.52 -3.71 -0.02 3.03 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 2.28 6.07 -51.93 -0.31 1.97 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.08 0.99 6.54 -51.93 -0.34 0.66 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.41 3.65 7.80 -40.82 -0.32 3.33 16 39 H 0.19 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.17 0.58 8.06 -52.48 -0.42 0.15 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.77 6.50 -51.92 -0.34 0.43 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -32.17 368.46 -8.29 -40.46 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.92 Total: -0.86 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.72 Total: 0.09 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.33 Total: -52.41 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.08 Total: -8.05 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.07 Total: -1.55 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.17 -8.29 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267945001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.090 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds