Wall clock time and date at job start Tue Mar 31 2020 23:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99732 * 2 1 4 4 H 1.48505 * 109.46946 * 269.99782 * 3 2 1 5 5 H 1.48499 * 109.47378 * 29.99851 * 3 2 1 6 6 H 1.48497 * 109.47050 * 150.00130 * 3 2 1 7 7 C 1.38809 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99596 * 163.07295 * 7 2 1 9 9 N 1.36928 * 120.00020 * 343.07421 * 7 2 1 10 10 C 1.46928 * 120.63123 * 331.84805 * 9 7 2 11 11 C 1.53195 * 108.77458 * 233.58790 * 10 9 7 12 12 C 1.53040 * 109.31048 * 305.36106 * 11 10 9 13 13 C 1.53002 * 109.46169 * 181.38787 * 12 11 10 14 14 C 1.52995 * 109.47749 * 174.97406 * 13 12 11 15 15 N 1.46500 * 109.47627 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00169 * 180.02562 * 15 14 13 17 17 O 1.21554 * 119.99843 * 359.97438 * 16 15 14 18 18 C 1.47881 * 119.99888 * 180.02562 * 16 15 14 19 19 N 1.32842 * 119.71893 * 0.02562 * 18 16 15 20 20 C 1.31368 * 121.68612 * 179.97438 * 19 18 16 21 21 C 1.39011 * 120.93276 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.32846 * 180.02562 * 21 20 19 23 23 C 1.38718 * 119.33898 * 359.97438 * 21 20 19 24 24 C 1.38826 * 118.45297 * 359.97438 * 23 21 20 25 25 F 1.35097 * 120.48914 * 179.97438 * 24 23 21 26 26 C 1.53036 * 109.52672 * 61.37743 * 12 11 10 27 27 C 1.46927 * 120.63253 * 151.82326 * 9 7 2 28 28 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58762 * 113.79874 * 10 9 7 30 30 H 1.09002 * 109.70367 * 353.43944 * 10 9 7 31 31 H 1.09006 * 109.49649 * 185.41529 * 11 10 9 32 32 H 1.08995 * 109.49987 * 65.31339 * 11 10 9 33 33 H 1.08993 * 109.46546 * 301.35627 * 12 11 10 34 34 H 1.09002 * 109.47149 * 54.97266 * 13 12 11 35 35 H 1.09012 * 109.47057 * 294.97823 * 13 12 11 36 36 H 1.09002 * 109.46910 * 59.99712 * 14 13 12 37 37 H 1.09000 * 109.46802 * 300.00485 * 14 13 12 38 38 H 0.97000 * 119.99842 * 0.02562 * 15 14 13 39 39 H 1.07995 * 119.53664 * 180.28620 * 20 19 18 40 40 H 1.08007 * 120.76923 * 179.97438 * 23 21 20 41 41 H 1.09000 * 109.50165 * 58.57657 * 26 12 11 42 42 H 1.09009 * 109.49736 * 178.67639 * 26 12 11 43 43 H 1.08999 * 109.59058 * 246.19813 * 27 9 7 44 44 H 1.09001 * 109.58511 * 6.48599 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2224 -0.2718 9 7 1.3701 -2.3621 0.3463 10 6 0.2261 -2.3398 1.2679 11 6 0.4975 -3.3188 2.4146 12 6 0.8120 -4.7005 1.8366 13 6 1.0497 -5.6892 2.9797 14 6 1.2402 -7.0951 2.4070 15 7 1.4684 -8.0417 3.5016 16 6 1.6637 -9.3479 3.2332 17 8 1.6500 -9.7407 2.0829 18 6 1.8934 -10.3035 4.3381 19 7 1.9057 -9.8684 5.5932 20 6 2.1057 -10.6832 6.6041 21 6 2.3141 -12.0418 6.3964 22 9 2.5180 -12.8689 7.4450 23 6 2.3095 -12.5400 5.1018 24 6 2.0946 -11.6556 4.0535 25 9 2.0823 -12.0963 2.7765 26 6 2.0676 -4.6169 0.9656 27 6 1.8139 -3.6528 -0.1977 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6770 -2.6404 0.7368 30 1 0.0967 -1.3344 1.6688 31 1 -0.3832 -3.3837 3.0537 32 1 1.3471 -2.9672 2.9997 33 1 -0.0280 -5.0407 1.2311 34 1 0.1900 -5.6833 3.6499 35 1 1.9431 -5.3979 3.5323 36 1 2.0998 -7.1010 1.7369 37 1 0.3469 -7.3863 1.8545 38 1 1.4789 -7.7283 4.4195 39 1 2.1040 -10.2928 7.6110 40 1 2.4694 -13.5915 4.9138 41 1 2.9024 -4.2529 1.5646 42 1 2.3046 -5.6058 0.5731 43 1 1.0403 -4.0606 -0.8483 44 1 2.7333 -3.5130 -0.7663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267945001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:47 Heat of formation + Delta-G solvation = -96.959418 kcal Electronic energy + Delta-G solvation = -28280.678248 eV Core-core repulsion = 23868.476471 eV Total energy + Delta-G solvation = -4412.201777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.28270 -50.24907 -41.65193 -40.22438 -39.44459 -36.76976 -35.15330 -33.76056 -33.04003 -32.23102 -31.53027 -29.96551 -27.13075 -25.95088 -25.08459 -24.37858 -23.56818 -22.16580 -22.04657 -20.63485 -19.55028 -19.40168 -18.97776 -18.67747 -17.56970 -17.15849 -17.00520 -16.80123 -16.70303 -16.42888 -16.26401 -15.72605 -15.54730 -15.38476 -15.27671 -14.94848 -14.84941 -14.47615 -14.40495 -14.22972 -13.90070 -13.84281 -13.69583 -13.01579 -12.93429 -12.82650 -12.53181 -12.28270 -12.14312 -11.92845 -11.79382 -11.69523 -11.46532 -11.15722 -11.11368 -10.97392 -10.93157 -10.51749 -10.34797 -10.03335 -8.64863 -7.85935 -5.31266 -0.93127 -0.37432 1.39096 1.46432 1.47454 1.57705 1.83792 2.34419 2.44241 2.52108 2.72980 2.83744 3.28029 3.37119 3.42197 3.74168 3.80433 3.83970 3.94972 4.13396 4.19963 4.30466 4.33961 4.44244 4.58961 4.61130 4.66793 4.76620 4.79161 4.91623 5.03613 5.05607 5.12348 5.20906 5.28823 5.33327 5.38638 5.42837 5.49012 5.58204 5.68885 5.83296 6.11872 6.41110 6.44886 7.01189 7.17053 7.89365 8.40922 9.20061 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.001783 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.166834 B =15701.206987 C =16158.656248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.054 4.054 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.174 3.826 11 C -0.120 4.120 12 C -0.070 4.070 13 C -0.108 4.108 14 C 0.120 3.880 15 N -0.693 5.693 16 C 0.561 3.439 17 O -0.562 6.562 18 C 0.019 3.981 19 N -0.408 5.408 20 C 0.080 3.920 21 C 0.117 3.883 22 F -0.108 7.108 23 C -0.145 4.145 24 C 0.126 3.874 25 F -0.113 7.113 26 C -0.118 4.118 27 C 0.137 3.863 28 H 0.249 0.751 29 H -0.008 1.008 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.421 0.579 39 H 0.220 0.780 40 H 0.193 0.807 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.009 0.991 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 -26.881 18.742 33.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.249 4.249 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.159 4.159 12 C -0.089 4.089 13 C -0.146 4.146 14 C -0.003 4.003 15 N -0.344 5.344 16 C 0.346 3.654 17 O -0.440 6.440 18 C -0.118 4.118 19 N -0.118 5.118 20 C -0.084 4.084 21 C 0.095 3.905 22 F -0.087 7.087 23 C -0.172 4.172 24 C 0.103 3.897 25 F -0.091 7.091 26 C -0.157 4.157 27 C 0.012 3.988 28 H 0.059 0.941 29 H 0.010 0.990 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.259 0.741 39 H 0.237 0.763 40 H 0.210 0.790 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.027 0.973 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.832 -26.128 17.987 31.952 hybrid contribution 0.268 0.165 -0.447 0.546 sum 4.100 -25.963 17.541 31.601 Atomic orbital electron populations 1.70193 1.06670 1.25789 1.55566 1.25818 0.96082 1.01541 1.01437 0.85283 0.78101 0.79558 0.77540 1.21257 1.21730 1.19508 1.19504 0.92754 0.86195 1.40791 0.91859 1.44343 1.36049 1.02245 1.50899 1.20618 0.87507 0.97787 0.89270 1.22017 1.00899 0.95221 0.97805 1.20877 0.97637 0.94295 0.96076 1.21704 1.03593 0.91384 0.97909 1.21493 1.01622 0.88059 0.89105 1.45760 1.70249 1.06218 1.12176 1.17891 0.77418 0.83025 0.87052 1.90868 1.52472 1.78817 1.21851 1.21218 1.06397 0.91418 0.92817 1.67710 1.09100 1.37600 0.97430 1.23677 0.96518 0.87603 1.00577 1.18748 0.98509 0.89505 0.83724 1.91631 1.91375 1.71099 1.54555 1.21906 1.02059 1.03448 0.89789 1.18512 0.99023 0.91841 0.80334 1.91633 1.92767 1.89370 1.35341 1.21983 0.97710 0.98703 0.97276 1.21080 0.96851 0.86340 0.94528 0.94143 0.99030 0.93066 0.91107 0.92837 0.92121 0.89676 0.90287 0.91561 0.91846 0.74075 0.76341 0.78998 0.92463 0.90666 0.97349 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.37 11.19 21.65 0.24 -56.13 16 2 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 3 Si 0.97 45.50 29.59 68.60 2.03 47.53 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.26 -14.77 9.58 84.03 0.81 -13.97 16 8 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -31.44 2.99 -699.08 -2.09 -33.53 16 10 C 0.17 8.45 5.30 86.36 0.46 8.91 16 11 C -0.12 -4.29 5.36 30.67 0.16 -4.13 16 12 C -0.07 -2.08 2.15 -10.77 -0.02 -2.10 16 13 C -0.11 -2.31 4.80 30.59 0.15 -2.16 16 14 C 0.12 2.69 5.43 86.38 0.47 3.16 16 15 N -0.69 -13.94 5.54 -465.94 -2.58 -16.52 16 16 C 0.56 13.61 7.80 86.80 0.68 14.28 16 17 O -0.56 -17.99 15.31 -3.89 -0.06 -18.05 16 18 C 0.02 0.35 6.75 41.88 0.28 0.64 16 19 N -0.41 -5.41 9.53 -184.60 -1.76 -7.17 16 20 C 0.08 0.56 11.17 84.95 0.95 1.51 16 21 C 0.12 0.86 7.35 22.57 0.17 1.03 16 22 F -0.11 -0.75 17.28 44.97 0.78 0.03 16 23 C -0.15 -1.36 10.14 22.53 0.23 -1.13 16 24 C 0.13 2.13 7.31 22.75 0.17 2.29 16 25 F -0.11 -2.53 15.54 44.97 0.70 -1.83 16 26 C -0.12 -3.86 5.14 30.67 0.16 -3.70 16 27 C 0.14 5.86 6.52 86.36 0.56 6.42 16 28 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.05 2.82 6.07 -2.39 -0.01 2.81 16 31 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.07 1.64 6.54 -2.39 -0.02 1.62 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.42 6.50 7.80 -92.71 -0.72 5.78 16 39 H 0.22 -0.05 8.06 -2.91 -0.02 -0.08 16 40 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.13 6.50 -2.38 -0.02 2.11 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 Total: -1.00 -72.79 368.46 3.20 -69.60 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.32 Total: 7.67 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.63 Total: 8.41 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -6.19 Total: -113.34 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.06 Total: -18.05 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 1.48 Total: -1.80 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.79 3.20 -69.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267945001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.364 kcal (2) G-P(sol) polarization free energy of solvation -72.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds