Wall clock time and date at job start Tue Mar 31 2020 23:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99625 * 2 1 4 4 H 1.48496 * 109.46734 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47143 * 299.99494 * 3 2 1 6 6 H 1.48500 * 109.47057 * 59.99864 * 3 2 1 7 7 C 1.38810 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99689 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00105 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47522 * 174.94903 * 10 9 7 12 12 N 1.46502 * 110.53690 * 306.68407 * 11 10 9 13 13 C 1.34771 * 119.99916 * 296.77214 * 12 11 10 14 14 O 1.21552 * 120.00046 * 5.05421 * 13 12 11 15 15 C 1.47845 * 119.99917 * 185.05027 * 13 12 11 16 16 C 1.40026 * 120.55693 * 179.72824 * 15 13 12 17 17 C 1.38355 * 118.28488 * 179.73618 * 16 15 13 18 18 C 1.38359 * 119.30492 * 0.51349 * 17 16 15 19 19 C 1.50694 * 119.46121 * 179.76784 * 18 17 16 20 20 F 1.39894 * 109.47485 * 209.97914 * 19 18 17 21 21 F 1.39904 * 109.47245 * 329.98142 * 19 18 17 22 22 N 1.31930 * 121.07686 * 359.74519 * 18 17 16 23 23 C 1.31686 * 121.87997 * 0.02562 * 22 18 17 24 24 C 1.54264 * 110.49285 * 184.07075 * 11 10 9 25 25 C 1.53873 * 106.60288 * 217.71244 * 24 11 10 26 26 C 1.54266 * 106.59507 * 359.97438 * 25 24 11 27 27 C 1.54884 * 104.19792 * 23.61164 * 26 25 24 28 28 H 0.96996 * 120.00546 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00269 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47697 * 54.94398 * 10 9 7 31 31 H 1.09000 * 109.47226 * 294.94680 * 10 9 7 32 32 H 0.97001 * 120.00195 * 116.77710 * 12 11 10 33 33 H 1.08003 * 120.85633 * 359.97438 * 16 15 13 34 34 H 1.08001 * 120.35030 * 180.26114 * 17 16 15 35 35 H 1.09007 * 109.47284 * 89.97472 * 19 18 17 36 36 H 1.08002 * 119.72038 * 179.97438 * 23 22 18 37 37 H 1.08999 * 110.03078 * 98.42203 * 24 11 10 38 38 H 1.09004 * 110.02884 * 336.99793 * 24 11 10 39 39 H 1.09001 * 110.03525 * 119.28141 * 25 24 11 40 40 H 1.08997 * 110.03358 * 240.71566 * 25 24 11 41 41 H 1.09009 * 110.48302 * 142.29077 * 26 25 24 42 42 H 1.08998 * 110.48830 * 264.92625 * 26 25 24 43 43 H 1.09001 * 110.75482 * 80.37333 * 27 26 25 44 44 H 1.09002 * 110.75548 * 203.55759 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0689 -4.8168 0.1284 12 7 0.1975 -4.6245 1.2903 13 6 0.7238 -4.6004 2.5307 14 8 1.9292 -4.6458 2.6804 15 6 -0.1649 -4.5186 3.7094 16 6 0.3692 -4.4985 5.0037 17 6 -0.5053 -4.4155 6.0726 18 6 -1.8669 -4.3665 5.8314 19 6 -2.8228 -4.2814 6.9932 20 9 -4.0286 -4.9030 6.6515 21 9 -2.2652 -4.9240 8.1039 22 7 -2.3419 -4.3925 4.6008 23 6 -1.5501 -4.4663 3.5511 24 6 1.8214 -6.1593 0.2343 25 6 0.9986 -7.1884 -0.5604 26 6 -0.2256 -6.4356 -1.1209 27 6 0.2258 -4.9546 -1.1634 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.7504 -3.6759 0.8434 31 1 2.6160 -3.7551 -0.9296 32 1 -0.7584 -4.5147 1.1668 33 1 1.4364 -4.5426 5.1632 34 1 -0.1294 -4.3934 7.0848 35 1 -3.0091 -3.2349 7.2346 36 1 -1.9767 -4.4859 2.5591 37 1 1.8944 -6.4651 1.2780 38 1 2.8176 -6.0639 -0.1977 39 1 1.5954 -7.5925 -1.3781 40 1 0.6722 -7.9938 0.0976 41 1 -0.4654 -6.7903 -2.1234 42 1 -1.0828 -6.5543 -0.4582 43 1 0.8368 -4.7622 -2.0453 44 1 -0.6357 -4.2873 -1.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269554158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:40 Heat of formation + Delta-G solvation = -90.775345 kcal Electronic energy + Delta-G solvation = -29826.508940 eV Core-core repulsion = 25414.575324 eV Total energy + Delta-G solvation = -4411.933616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.26339 -47.26283 -40.85430 -39.70435 -37.50612 -34.35648 -33.51635 -32.84950 -32.21492 -30.98358 -28.71750 -28.37937 -27.07304 -24.53089 -24.05414 -23.24495 -22.22705 -21.06108 -20.36891 -19.14611 -18.34700 -17.82477 -17.68162 -17.41178 -17.10825 -16.35240 -15.75630 -15.25204 -15.11992 -14.72591 -14.61223 -14.50589 -14.11828 -14.07052 -13.81637 -13.61352 -13.38039 -13.20541 -13.14826 -12.97061 -12.75001 -12.66547 -12.11372 -11.59024 -11.51172 -11.33471 -11.12337 -10.95573 -10.84783 -10.74569 -10.50756 -10.36940 -10.15303 -10.06976 -10.00987 -9.70609 -9.47298 -9.45688 -8.82110 -8.66189 -6.86837 -5.75536 -3.01758 0.29947 0.95606 2.81747 3.09651 3.25940 3.43536 3.49926 3.51753 3.68126 3.79167 4.01263 4.46699 4.53156 4.58238 4.60723 4.67011 4.77063 4.81122 4.88484 4.96895 5.01410 5.28247 5.47279 5.54962 5.60054 5.62200 5.70312 5.73105 5.84821 5.89030 5.91531 5.98541 6.16296 6.18364 6.25472 6.28233 6.40066 6.50040 6.55794 6.86040 7.04786 7.45253 7.72080 7.74699 8.42353 8.44002 9.55662 10.13219 10.48963 11.47721 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008752 B = 0.003777 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3198.319249 B = 7412.437599 C = 9464.254652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.230 4.230 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.146 3.854 11 C 0.169 3.831 12 N -0.697 5.697 13 C 0.568 3.432 14 O -0.521 6.521 15 C -0.156 4.156 16 C -0.017 4.017 17 C -0.147 4.147 18 C 0.061 3.939 19 C 0.328 3.672 20 F -0.186 7.186 21 F -0.195 7.195 22 N -0.457 5.457 23 C 0.140 3.860 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.119 4.119 28 H 0.253 0.747 29 H 0.381 0.619 30 H 0.045 0.955 31 H 0.022 0.978 32 H 0.396 0.604 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.167 0.833 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 -14.431 8.659 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.361 4.361 8 H 0.087 0.913 9 N -0.369 5.369 10 C 0.017 3.983 11 C 0.084 3.916 12 N -0.348 5.348 13 C 0.353 3.647 14 O -0.398 6.398 15 C -0.161 4.161 16 C -0.043 4.043 17 C -0.167 4.167 18 C -0.078 4.078 19 C 0.273 3.727 20 F -0.167 7.167 21 F -0.176 7.176 22 N -0.166 5.166 23 C -0.019 4.019 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.157 4.157 28 H 0.063 0.937 29 H 0.214 0.786 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.231 0.769 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.184 0.816 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.719 -14.370 8.638 17.417 hybrid contribution 0.508 1.066 0.089 1.184 sum -4.211 -13.304 8.727 16.458 Atomic orbital electron populations 1.69646 1.05010 1.25329 1.58562 1.24670 0.95499 0.97473 1.03430 0.86150 0.78880 0.84327 0.77098 1.20610 1.21944 1.22041 1.19276 0.91055 0.84176 1.41605 0.91308 1.42188 1.05577 0.99738 1.89392 1.21080 0.93420 0.84987 0.98780 1.21429 0.90819 0.95240 0.84148 1.45724 1.10869 1.72936 1.05255 1.17717 0.87552 0.76790 0.82592 1.90760 1.14184 1.48961 1.85909 1.21319 0.95347 1.03835 0.95564 1.21756 1.01625 0.90599 0.90339 1.21824 0.92791 1.00878 1.01226 1.21787 0.92909 0.99617 0.93454 1.20095 0.77737 0.94553 0.80303 1.93036 1.45986 1.85222 1.92453 1.93015 1.85662 1.84780 1.54148 1.67262 1.39991 1.11244 0.98057 1.22975 0.88938 0.92378 0.97634 1.22437 0.99079 0.93556 1.01187 1.22138 0.96729 0.97908 0.99259 1.22411 0.97681 0.95536 1.00694 1.22734 1.00167 0.95867 0.96947 0.93750 0.78555 0.93736 0.96077 0.76893 0.82678 0.83236 0.85061 0.81601 0.90898 0.90763 0.91936 0.92345 0.91663 0.91900 0.89590 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.85 13.06 55.49 0.72 -27.13 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.90 22.66 29.55 -169.99 -5.02 17.64 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.23 -6.46 9.99 -15.06 -0.15 -6.61 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -17.92 5.30 -59.91 -0.32 -18.23 16 10 C 0.15 2.98 4.84 -4.04 -0.02 2.96 16 11 C 0.17 2.64 0.39 -130.17 -0.05 2.58 16 12 N -0.70 -10.39 4.55 -47.02 -0.21 -10.61 16 13 C 0.57 9.28 6.94 -12.33 -0.09 9.20 16 14 O -0.52 -10.03 13.41 5.32 0.07 -9.96 16 15 C -0.16 -2.18 5.89 -104.82 -0.62 -2.80 16 16 C -0.02 -0.21 9.72 -38.87 -0.38 -0.59 16 17 C -0.15 -1.57 9.42 -39.49 -0.37 -1.95 16 18 C 0.06 0.71 6.58 -82.51 -0.54 0.17 16 19 C 0.33 3.10 5.72 36.00 0.21 3.31 16 20 F -0.19 -2.17 17.05 2.25 0.04 -2.13 16 21 F -0.19 -1.87 16.45 2.25 0.04 -1.83 16 22 N -0.46 -6.08 9.94 -9.14 -0.09 -6.17 16 23 C 0.14 1.80 10.71 -17.14 -0.18 1.62 16 24 C -0.12 -1.70 5.67 -25.61 -0.15 -1.84 16 25 C -0.12 -1.35 6.80 -25.61 -0.17 -1.52 16 26 C -0.13 -1.35 6.79 -25.07 -0.17 -1.52 16 27 C -0.12 -1.62 5.61 -24.75 -0.14 -1.76 16 28 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.38 9.63 7.27 -40.82 -0.30 9.33 16 30 H 0.04 1.02 6.53 -51.93 -0.34 0.68 16 31 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 32 H 0.40 5.06 6.56 -40.82 -0.27 4.79 16 33 H 0.16 1.84 7.74 -52.48 -0.41 1.43 16 34 H 0.15 1.19 7.59 -52.49 -0.40 0.79 16 35 H 0.13 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.17 1.77 6.44 -52.49 -0.34 1.43 16 37 H 0.07 1.08 6.41 -51.93 -0.33 0.75 16 38 H 0.07 1.02 7.84 -51.93 -0.41 0.62 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.21 7.98 -51.93 -0.41 0.80 16 44 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -33.73 368.49 -7.84 -41.57 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.70 Total: 10.59 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.92 Total: 0.72 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: 0.10 Total: -62.14 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.97 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.73 -7.84 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269554158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.206 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds