Wall clock time and date at job start Tue Mar 31 2020 23:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99625 * 2 1 4 4 H 1.48496 * 109.46734 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47143 * 299.99494 * 3 2 1 6 6 H 1.48500 * 109.47057 * 59.99864 * 3 2 1 7 7 C 1.38810 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99689 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00105 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47522 * 174.94903 * 10 9 7 12 12 N 1.46502 * 110.53690 * 306.68407 * 11 10 9 13 13 C 1.34771 * 119.99916 * 296.77214 * 12 11 10 14 14 O 1.21552 * 120.00046 * 5.05421 * 13 12 11 15 15 C 1.47845 * 119.99917 * 185.05027 * 13 12 11 16 16 C 1.40026 * 120.55693 * 179.72824 * 15 13 12 17 17 C 1.38355 * 118.28488 * 179.73618 * 16 15 13 18 18 C 1.38359 * 119.30492 * 0.51349 * 17 16 15 19 19 C 1.50694 * 119.46121 * 179.76784 * 18 17 16 20 20 F 1.39894 * 109.47485 * 209.97914 * 19 18 17 21 21 F 1.39904 * 109.47245 * 329.98142 * 19 18 17 22 22 N 1.31930 * 121.07686 * 359.74519 * 18 17 16 23 23 C 1.31686 * 121.87997 * 0.02562 * 22 18 17 24 24 C 1.54264 * 110.49285 * 184.07075 * 11 10 9 25 25 C 1.53873 * 106.60288 * 217.71244 * 24 11 10 26 26 C 1.54266 * 106.59507 * 359.97438 * 25 24 11 27 27 C 1.54884 * 104.19792 * 23.61164 * 26 25 24 28 28 H 0.96996 * 120.00546 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00269 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47697 * 54.94398 * 10 9 7 31 31 H 1.09000 * 109.47226 * 294.94680 * 10 9 7 32 32 H 0.97001 * 120.00195 * 116.77710 * 12 11 10 33 33 H 1.08003 * 120.85633 * 359.97438 * 16 15 13 34 34 H 1.08001 * 120.35030 * 180.26114 * 17 16 15 35 35 H 1.09007 * 109.47284 * 89.97472 * 19 18 17 36 36 H 1.08002 * 119.72038 * 179.97438 * 23 22 18 37 37 H 1.08999 * 110.03078 * 98.42203 * 24 11 10 38 38 H 1.09004 * 110.02884 * 336.99793 * 24 11 10 39 39 H 1.09001 * 110.03525 * 119.28141 * 25 24 11 40 40 H 1.08997 * 110.03358 * 240.71566 * 25 24 11 41 41 H 1.09009 * 110.48302 * 142.29077 * 26 25 24 42 42 H 1.08998 * 110.48830 * 264.92625 * 26 25 24 43 43 H 1.09001 * 110.75482 * 80.37333 * 27 26 25 44 44 H 1.09002 * 110.75548 * 203.55759 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0689 -4.8168 0.1284 12 7 0.1975 -4.6245 1.2903 13 6 0.7238 -4.6004 2.5307 14 8 1.9292 -4.6458 2.6804 15 6 -0.1649 -4.5186 3.7094 16 6 0.3692 -4.4985 5.0037 17 6 -0.5053 -4.4155 6.0726 18 6 -1.8669 -4.3665 5.8314 19 6 -2.8228 -4.2814 6.9932 20 9 -4.0286 -4.9030 6.6515 21 9 -2.2652 -4.9240 8.1039 22 7 -2.3419 -4.3925 4.6008 23 6 -1.5501 -4.4663 3.5511 24 6 1.8214 -6.1593 0.2343 25 6 0.9986 -7.1884 -0.5604 26 6 -0.2256 -6.4356 -1.1209 27 6 0.2258 -4.9546 -1.1634 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.7504 -3.6759 0.8434 31 1 2.6160 -3.7551 -0.9296 32 1 -0.7584 -4.5147 1.1668 33 1 1.4364 -4.5426 5.1632 34 1 -0.1294 -4.3934 7.0848 35 1 -3.0091 -3.2349 7.2346 36 1 -1.9767 -4.4859 2.5591 37 1 1.8944 -6.4651 1.2780 38 1 2.8176 -6.0639 -0.1977 39 1 1.5954 -7.5925 -1.3781 40 1 0.6722 -7.9938 0.0976 41 1 -0.4654 -6.7903 -2.1234 42 1 -1.0828 -6.5543 -0.4582 43 1 0.8368 -4.7622 -2.0453 44 1 -0.6357 -4.2873 -1.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269554158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:39 Heat of formation + Delta-G solvation = -112.781861 kcal Electronic energy + Delta-G solvation = -29827.463214 eV Core-core repulsion = 25414.575324 eV Total energy + Delta-G solvation = -4412.887890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.03904 -48.05421 -41.95743 -40.82908 -38.73386 -36.19836 -34.76493 -33.87629 -33.38709 -32.73884 -29.93206 -29.64593 -28.08132 -26.29633 -25.03597 -24.26326 -23.94483 -22.17419 -21.39079 -20.45334 -19.33557 -19.16714 -18.64617 -18.52248 -18.32963 -17.42984 -16.95372 -16.46013 -16.32975 -16.20898 -15.81169 -15.65489 -15.52970 -15.07225 -14.90230 -14.88936 -14.49840 -14.41000 -14.31777 -14.11069 -14.02851 -13.74214 -13.60783 -13.20650 -12.85600 -12.55506 -12.38599 -12.37708 -12.16146 -12.10043 -11.92037 -11.78277 -11.72364 -11.29560 -11.23251 -11.12514 -10.93306 -10.59181 -10.44300 -9.96877 -8.95326 -7.95865 -5.21589 -0.69893 0.00176 1.43850 1.44507 1.54287 1.68986 2.06713 2.27695 2.54315 2.60511 3.06710 3.16952 3.36660 3.46254 3.58877 3.62796 3.70939 3.74500 3.84639 3.94352 4.00057 4.12639 4.18359 4.39720 4.43106 4.53937 4.58791 4.68866 4.74442 4.81914 4.85873 4.90993 4.93539 5.08875 5.12653 5.18112 5.24909 5.30065 5.33969 5.46831 5.51621 5.68299 6.26992 6.48019 6.53074 7.18783 7.34762 8.09187 8.37476 9.27163 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008752 B = 0.003777 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3198.319249 B = 7412.437599 C = 9464.254652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.063 0.937 9 N -0.728 5.728 10 C 0.147 3.853 11 C 0.171 3.829 12 N -0.690 5.690 13 C 0.564 3.436 14 O -0.559 6.559 15 C -0.176 4.176 16 C -0.024 4.024 17 C -0.138 4.138 18 C 0.056 3.944 19 C 0.329 3.671 20 F -0.199 7.199 21 F -0.194 7.194 22 N -0.475 5.475 23 C 0.139 3.861 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.117 4.117 28 H 0.251 0.749 29 H 0.377 0.623 30 H 0.017 0.983 31 H 0.021 0.979 32 H 0.406 0.594 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.182 0.818 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 -15.110 9.127 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.222 1.222 7 C -0.373 4.373 8 H 0.081 0.919 9 N -0.371 5.371 10 C 0.020 3.980 11 C 0.084 3.916 12 N -0.341 5.341 13 C 0.351 3.649 14 O -0.439 6.439 15 C -0.181 4.181 16 C -0.050 4.050 17 C -0.157 4.157 18 C -0.082 4.082 19 C 0.275 3.725 20 F -0.181 7.181 21 F -0.175 7.175 22 N -0.183 5.183 23 C -0.020 4.020 24 C -0.158 4.158 25 C -0.153 4.153 26 C -0.152 4.152 27 C -0.155 4.155 28 H 0.060 0.940 29 H 0.210 0.790 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.243 0.757 33 H 0.174 0.826 34 H 0.198 0.802 35 H 0.188 0.812 36 H 0.199 0.801 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.546 -15.078 9.096 18.462 hybrid contribution 0.811 1.265 -0.001 1.503 sum -4.735 -13.814 9.096 17.204 Atomic orbital electron populations 1.69771 1.06118 1.25790 1.59636 1.25373 0.96381 1.00372 1.03852 0.85198 0.78103 0.80450 0.76789 1.19802 1.21624 1.22160 1.19558 0.91103 0.85704 1.40966 0.91908 1.42246 1.05437 1.00329 1.89108 1.21133 0.94171 0.85364 0.97378 1.21365 0.90610 0.94040 0.85542 1.45682 1.11347 1.72278 1.04825 1.18124 0.87428 0.75925 0.83462 1.90732 1.15793 1.50872 1.86504 1.21224 0.95586 1.06081 0.95218 1.21925 1.02147 0.90504 0.90449 1.22089 0.92180 0.99392 1.02037 1.22293 0.93894 0.98352 0.93685 1.20426 0.76558 0.96153 0.79372 1.93009 1.46774 1.85679 1.92594 1.93018 1.85612 1.85019 1.53892 1.67324 1.40252 1.12029 0.98738 1.23175 0.88440 0.91891 0.98475 1.22377 0.99217 0.93254 1.00945 1.22107 0.96479 0.97198 0.99467 1.22374 0.97789 0.92836 1.02201 1.22698 0.99343 0.98157 0.95266 0.94048 0.79020 0.96457 0.96085 0.75670 0.82592 0.80226 0.81247 0.80128 0.92258 0.91325 0.90483 0.91086 0.89653 0.90724 0.90218 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.71 13.06 21.65 0.28 -57.43 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.96 46.85 29.55 68.60 2.03 48.88 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 7 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 8 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 9 N -0.73 -36.85 5.30 -343.47 -1.82 -38.67 16 10 C 0.15 6.23 4.84 86.38 0.42 6.64 16 11 C 0.17 5.35 0.39 4.67 0.00 5.35 16 12 N -0.69 -20.82 4.55 -420.95 -1.91 -22.74 16 13 C 0.56 18.93 6.94 86.79 0.60 19.53 16 14 O -0.56 -22.46 13.41 -3.88 -0.05 -22.52 16 15 C -0.18 -4.97 5.89 -19.99 -0.12 -5.09 16 16 C -0.02 -0.59 9.72 22.73 0.22 -0.37 16 17 C -0.14 -2.71 9.42 22.33 0.21 -2.50 16 18 C 0.06 1.21 6.58 42.57 0.28 1.49 16 19 C 0.33 5.43 5.72 71.23 0.41 5.84 16 20 F -0.20 -4.31 17.05 44.97 0.77 -3.55 16 21 F -0.19 -3.24 16.45 44.97 0.74 -2.50 16 22 N -0.47 -12.11 9.94 -182.82 -1.82 -13.93 16 23 C 0.14 3.53 10.71 85.02 0.91 4.44 16 24 C -0.12 -3.24 5.67 31.32 0.18 -3.06 16 25 C -0.11 -2.27 6.80 31.32 0.21 -2.06 16 26 C -0.11 -2.17 6.79 31.67 0.22 -1.95 16 27 C -0.12 -3.07 5.61 31.88 0.18 -2.89 16 28 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.38 19.46 7.27 -92.70 -0.67 18.78 16 30 H 0.02 0.84 6.53 -2.39 -0.02 0.82 16 31 H 0.02 0.90 8.04 -2.39 -0.02 0.88 16 32 H 0.41 10.33 6.56 -92.71 -0.61 9.72 16 33 H 0.16 3.75 7.74 -2.91 -0.02 3.73 16 34 H 0.18 2.36 7.59 -2.91 -0.02 2.34 16 35 H 0.17 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.18 3.77 6.44 -2.91 -0.02 3.75 16 37 H 0.06 1.78 6.41 -2.39 -0.02 1.77 16 38 H 0.07 1.91 7.84 -2.39 -0.02 1.89 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 2.20 7.98 -2.39 -0.02 2.18 16 44 H 0.07 1.93 8.06 -2.39 -0.02 1.91 16 Total: -1.00 -73.41 368.49 3.01 -70.39 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.22 Total: 33.06 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.02 Total: 9.00 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -5.27 Total: -132.77 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 1.51 Total: -6.05 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -73.41 3.01 -70.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269554158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.391 kcal (2) G-P(sol) polarization free energy of solvation -73.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds