Wall clock time and date at job start Tue Mar 31 2020 23:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99956 * 2 1 4 4 H 1.48494 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47217 * 300.00088 * 3 2 1 6 6 H 1.48506 * 109.46872 * 60.00083 * 3 2 1 7 7 C 1.38815 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99920 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99853 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47370 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47569 * 179.97438 * 11 10 9 13 13 C 1.53039 * 109.46070 * 174.99826 * 12 11 10 14 14 C 1.53194 * 109.31369 * 181.37287 * 13 12 11 15 15 N 1.46922 * 108.77213 * 305.36675 * 14 13 12 16 16 C 1.34776 * 120.62834 * 233.58280 * 15 14 13 17 17 O 1.21547 * 120.00001 * 7.89241 * 16 15 14 18 18 C 1.47879 * 120.00085 * 187.89323 * 16 15 14 19 19 N 1.32852 * 119.72508 * 7.90947 * 18 16 15 20 20 C 1.31362 * 121.69067 * 180.29569 * 19 18 16 21 21 C 1.38995 * 120.93531 * 359.69733 * 20 19 18 22 22 F 1.35099 * 120.33320 * 179.97438 * 21 20 19 23 23 C 1.38725 * 119.34330 * 359.97438 * 21 20 19 24 24 C 1.38831 * 118.44437 * 0.02562 * 23 21 20 25 25 F 1.35100 * 120.48534 * 179.97438 * 24 23 21 26 26 C 1.46930 * 118.74081 * 53.86068 * 15 14 13 27 27 C 1.53034 * 109.44763 * 295.06051 * 12 11 10 28 28 H 0.97003 * 120.00005 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99962 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47667 * 59.99096 * 10 9 7 31 31 H 1.09004 * 109.46683 * 299.99332 * 10 9 7 32 32 H 1.08998 * 109.47310 * 59.99066 * 11 10 9 33 33 H 1.09003 * 109.46914 * 299.99980 * 11 10 9 34 34 H 1.09002 * 109.45812 * 55.02579 * 12 11 10 35 35 H 1.08994 * 109.49783 * 61.42008 * 13 12 11 36 36 H 1.08998 * 109.52469 * 301.34013 * 13 12 11 37 37 H 1.08995 * 109.58869 * 185.57528 * 14 13 12 38 38 H 1.09002 * 109.70152 * 65.21964 * 14 13 12 39 39 H 1.08005 * 119.53116 * 179.67729 * 20 19 18 40 40 H 1.07994 * 120.77773 * 180.02562 * 23 21 20 41 41 H 1.08995 * 109.58477 * 65.92753 * 26 15 14 42 42 H 1.08999 * 109.58671 * 186.34718 * 26 15 14 43 43 H 1.08999 * 109.50013 * 298.57362 * 27 12 11 44 44 H 1.09003 * 109.50099 * 58.66912 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0021 12 6 1.8289 -6.1448 0.0026 13 6 0.8389 -7.3050 0.1288 14 6 1.6105 -8.6279 0.1635 15 7 2.4778 -8.7007 -1.0202 16 6 2.4243 -9.7642 -1.8463 17 8 1.5588 -10.6049 -1.6995 18 6 3.4187 -9.9085 -2.9313 19 7 4.4528 -9.0767 -2.9919 20 6 5.3556 -9.1662 -3.9420 21 6 5.2652 -10.1462 -4.9235 22 9 6.2003 -10.2268 -5.8953 23 6 4.2053 -11.0408 -4.8955 24 6 3.2665 -10.9220 -3.8796 25 9 2.2176 -11.7709 -3.8131 26 6 3.4088 -7.5948 -1.2829 27 6 2.6130 -6.2809 -1.3045 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6842 -3.7141 0.8920 31 1 2.6853 -3.7149 -0.8879 32 1 0.4375 -4.7626 -0.8881 33 1 0.4369 -4.7614 0.8918 34 1 2.5206 -6.1643 0.8448 35 1 0.1625 -7.3007 -0.7258 36 1 0.2640 -7.1949 1.0483 37 1 0.9079 -9.4612 0.1536 38 1 2.2197 -8.6744 1.0662 39 1 6.1796 -8.4682 -3.9608 40 1 4.1127 -11.8115 -5.6463 41 1 4.1618 -7.5563 -0.4959 42 1 3.8931 -7.7462 -2.2476 43 1 1.9199 -6.2862 -2.1457 44 1 3.3014 -5.4417 -1.4050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269877310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:19 Heat of formation + Delta-G solvation = -62.742715 kcal Electronic energy + Delta-G solvation = -28910.596508 eV Core-core repulsion = 24499.878479 eV Total energy + Delta-G solvation = -4410.718029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.80437 -49.55891 -41.28323 -39.66797 -37.93245 -35.36141 -33.81760 -33.09197 -31.90442 -31.01880 -30.83140 -28.42040 -25.92560 -24.88238 -24.34375 -23.32207 -22.88207 -21.49462 -20.49160 -19.72258 -18.92901 -18.75839 -17.67021 -17.01946 -16.97750 -16.55006 -16.41396 -16.06025 -15.47871 -15.42557 -15.05543 -14.78409 -14.74214 -14.35732 -14.12194 -13.97099 -13.76349 -13.62411 -13.38807 -13.13946 -12.89032 -12.84475 -12.65382 -12.12769 -11.38381 -11.25103 -11.12680 -11.02243 -10.85836 -10.74330 -10.62111 -10.52491 -10.31827 -10.20403 -9.89390 -9.66569 -9.64229 -9.44755 -8.84381 -8.76291 -6.88289 -5.74313 -3.02580 -0.33179 0.09965 2.07893 2.50945 2.97184 2.99439 3.28734 3.40160 3.44201 3.49413 3.52003 3.82692 3.87483 4.23479 4.59658 4.64288 4.79049 4.85404 4.86500 4.94470 5.00447 5.09762 5.26771 5.43822 5.49895 5.57910 5.64783 5.75184 5.76236 5.82577 5.91007 6.04494 6.09627 6.13023 6.22887 6.40501 6.44896 6.48772 6.51982 6.69556 6.91460 6.96551 7.13739 7.72053 7.77795 8.45073 9.55742 10.15668 10.49732 11.48900 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.002237 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.991961 B =12516.031990 C =13902.021736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.153 3.847 11 C -0.121 4.121 12 C -0.084 4.084 13 C -0.128 4.128 14 C 0.110 3.890 15 N -0.583 5.583 16 C 0.568 3.432 17 O -0.526 6.526 18 C 0.039 3.961 19 N -0.389 5.389 20 C 0.061 3.939 21 C 0.106 3.894 22 F -0.114 7.114 23 C -0.156 4.156 24 C 0.145 3.855 25 F -0.094 7.094 26 C 0.070 3.930 27 C -0.132 4.132 28 H 0.254 0.746 29 H 0.383 0.617 30 H 0.016 0.984 31 H 0.020 0.980 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.188 0.812 40 H 0.169 0.831 41 H 0.068 0.932 42 H 0.143 0.857 43 H 0.063 0.937 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.013 -26.086 -8.594 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.026 3.974 11 C -0.159 4.159 12 C -0.103 4.103 13 C -0.166 4.166 14 C -0.012 4.012 15 N -0.314 5.314 16 C 0.353 3.647 17 O -0.402 6.402 18 C -0.099 4.099 19 N -0.100 5.100 20 C -0.100 4.100 21 C 0.084 3.916 22 F -0.092 7.092 23 C -0.183 4.183 24 C 0.122 3.878 25 F -0.072 7.072 26 C -0.052 4.052 27 C -0.170 4.170 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.204 0.796 40 H 0.187 0.813 41 H 0.087 0.913 42 H 0.159 0.841 43 H 0.082 0.918 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.719 -25.821 -7.872 29.044 hybrid contribution 0.098 0.313 -0.817 0.880 sum 10.817 -25.508 -8.689 29.037 Atomic orbital electron populations 1.69675 1.05125 1.25474 1.58069 1.24756 0.95536 0.97718 1.03235 0.86117 0.78765 0.84158 0.77181 1.20555 1.21889 1.21889 1.19289 0.91040 0.84253 1.42237 0.91175 1.42409 1.05912 1.00183 1.89422 1.20694 0.93613 0.85562 0.97559 1.21760 0.98681 0.93428 1.02006 1.21112 0.96945 0.94372 0.97879 1.21971 0.98160 0.93522 1.02949 1.21747 0.93695 0.99341 0.86406 1.47963 1.39303 1.19129 1.25053 1.17510 0.83435 0.82563 0.81174 1.90859 1.35400 1.42411 1.71527 1.21592 0.96476 0.94278 0.97587 1.67901 1.00699 1.20355 1.21007 1.23361 0.98984 0.97555 0.90099 1.18746 0.87806 0.96634 0.88381 1.91608 1.62356 1.95364 1.59879 1.21723 0.93977 1.02125 1.00449 1.18248 0.85906 0.89335 0.94331 1.91678 1.53108 1.67160 1.95274 1.23205 0.91156 0.84576 1.06281 1.22164 0.99751 0.97085 0.98031 0.93600 0.78379 0.96657 0.96269 0.92119 0.91984 0.91013 0.91467 0.90463 0.89064 0.91059 0.79559 0.81310 0.91338 0.84083 0.91843 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.74 -19.01 5.60 -59.91 -0.34 -19.35 16 10 C 0.15 3.06 6.02 -4.04 -0.02 3.04 16 11 C -0.12 -1.93 4.80 -26.73 -0.13 -2.06 16 12 C -0.08 -1.04 2.15 -90.58 -0.19 -1.24 16 13 C -0.13 -1.43 5.36 -26.61 -0.14 -1.57 16 14 C 0.11 1.17 6.44 -3.71 -0.02 1.15 16 15 N -0.58 -6.58 2.97 -173.61 -0.51 -7.10 16 16 C 0.57 7.05 7.65 -12.31 -0.09 6.95 16 17 O -0.53 -7.96 14.78 5.32 0.08 -7.88 16 18 C 0.04 0.39 6.61 -82.96 -0.55 -0.16 16 19 N -0.39 -3.13 6.07 -9.70 -0.06 -3.19 16 20 C 0.06 0.34 11.17 -17.47 -0.20 0.14 16 21 C 0.11 0.59 7.35 -39.12 -0.29 0.30 16 22 F -0.11 -0.64 17.28 2.25 0.04 -0.60 16 23 C -0.16 -0.92 10.14 -39.18 -0.40 -1.32 16 24 C 0.14 1.28 7.30 -38.84 -0.28 1.00 16 25 F -0.09 -1.02 15.58 2.25 0.04 -0.99 16 26 C 0.07 0.70 5.93 -3.48 -0.02 0.68 16 27 C -0.13 -1.54 5.16 -26.39 -0.14 -1.68 16 28 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.38 6.53 -51.93 -0.34 0.04 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.04 7.00 -51.93 -0.36 0.67 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.19 0.49 8.06 -52.48 -0.42 0.06 16 40 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.14 1.32 3.94 -88.22 -0.35 0.97 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.02 6.50 -51.93 -0.34 0.68 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -33.64 364.95 -8.18 -41.82 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.90 Total: 4.47 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.72 Total: -2.23 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.18 Total: -57.62 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.08 Total: -7.88 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.07 Total: -1.59 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.64 -8.18 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269877310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.927 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds