Wall clock time and date at job start Tue Mar 31 2020 23:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99956 * 2 1 4 4 H 1.48494 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47217 * 300.00088 * 3 2 1 6 6 H 1.48506 * 109.46872 * 60.00083 * 3 2 1 7 7 C 1.38815 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99920 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99853 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47370 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47569 * 179.97438 * 11 10 9 13 13 C 1.53039 * 109.46070 * 174.99826 * 12 11 10 14 14 C 1.53194 * 109.31369 * 181.37287 * 13 12 11 15 15 N 1.46922 * 108.77213 * 305.36675 * 14 13 12 16 16 C 1.34776 * 120.62834 * 233.58280 * 15 14 13 17 17 O 1.21547 * 120.00001 * 7.89241 * 16 15 14 18 18 C 1.47879 * 120.00085 * 187.89323 * 16 15 14 19 19 N 1.32852 * 119.72508 * 7.90947 * 18 16 15 20 20 C 1.31362 * 121.69067 * 180.29569 * 19 18 16 21 21 C 1.38995 * 120.93531 * 359.69733 * 20 19 18 22 22 F 1.35099 * 120.33320 * 179.97438 * 21 20 19 23 23 C 1.38725 * 119.34330 * 359.97438 * 21 20 19 24 24 C 1.38831 * 118.44437 * 0.02562 * 23 21 20 25 25 F 1.35100 * 120.48534 * 179.97438 * 24 23 21 26 26 C 1.46930 * 118.74081 * 53.86068 * 15 14 13 27 27 C 1.53034 * 109.44763 * 295.06051 * 12 11 10 28 28 H 0.97003 * 120.00005 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99962 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47667 * 59.99096 * 10 9 7 31 31 H 1.09004 * 109.46683 * 299.99332 * 10 9 7 32 32 H 1.08998 * 109.47310 * 59.99066 * 11 10 9 33 33 H 1.09003 * 109.46914 * 299.99980 * 11 10 9 34 34 H 1.09002 * 109.45812 * 55.02579 * 12 11 10 35 35 H 1.08994 * 109.49783 * 61.42008 * 13 12 11 36 36 H 1.08998 * 109.52469 * 301.34013 * 13 12 11 37 37 H 1.08995 * 109.58869 * 185.57528 * 14 13 12 38 38 H 1.09002 * 109.70152 * 65.21964 * 14 13 12 39 39 H 1.08005 * 119.53116 * 179.67729 * 20 19 18 40 40 H 1.07994 * 120.77773 * 180.02562 * 23 21 20 41 41 H 1.08995 * 109.58477 * 65.92753 * 26 15 14 42 42 H 1.08999 * 109.58671 * 186.34718 * 26 15 14 43 43 H 1.08999 * 109.50013 * 298.57362 * 27 12 11 44 44 H 1.09003 * 109.50099 * 58.66912 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0021 12 6 1.8289 -6.1448 0.0026 13 6 0.8389 -7.3050 0.1288 14 6 1.6105 -8.6279 0.1635 15 7 2.4778 -8.7007 -1.0202 16 6 2.4243 -9.7642 -1.8463 17 8 1.5588 -10.6049 -1.6995 18 6 3.4187 -9.9085 -2.9313 19 7 4.4528 -9.0767 -2.9919 20 6 5.3556 -9.1662 -3.9420 21 6 5.2652 -10.1462 -4.9235 22 9 6.2003 -10.2268 -5.8953 23 6 4.2053 -11.0408 -4.8955 24 6 3.2665 -10.9220 -3.8796 25 9 2.2176 -11.7709 -3.8131 26 6 3.4088 -7.5948 -1.2829 27 6 2.6130 -6.2809 -1.3045 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6842 -3.7141 0.8920 31 1 2.6853 -3.7149 -0.8879 32 1 0.4375 -4.7626 -0.8881 33 1 0.4369 -4.7614 0.8918 34 1 2.5206 -6.1643 0.8448 35 1 0.1625 -7.3007 -0.7258 36 1 0.2640 -7.1949 1.0483 37 1 0.9079 -9.4612 0.1536 38 1 2.2197 -8.6744 1.0662 39 1 6.1796 -8.4682 -3.9608 40 1 4.1127 -11.8115 -5.6463 41 1 4.1618 -7.5563 -0.4959 42 1 3.8931 -7.7462 -2.2476 43 1 1.9199 -6.2862 -2.1457 44 1 3.3014 -5.4417 -1.4050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269877310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:18 Heat of formation + Delta-G solvation = -83.286255 kcal Electronic energy + Delta-G solvation = -28911.487343 eV Core-core repulsion = 24499.878479 eV Total energy + Delta-G solvation = -4411.608864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.27894 -50.25264 -41.99714 -40.44320 -38.97894 -36.90591 -35.15990 -33.89677 -33.00773 -32.38174 -31.65096 -29.88531 -27.00414 -25.87311 -25.25352 -24.33545 -24.16587 -22.70615 -21.67665 -20.63291 -19.54131 -19.35151 -19.10340 -18.40920 -17.59914 -17.30615 -17.11233 -16.66439 -16.64712 -16.29874 -16.14712 -15.87424 -15.57759 -15.50387 -15.33293 -15.09792 -14.92726 -14.78406 -14.42775 -14.12699 -14.03332 -13.86756 -13.63318 -13.09428 -13.01077 -12.85662 -12.49007 -12.30049 -12.17640 -12.05364 -12.01733 -11.70523 -11.56158 -11.44777 -11.18249 -11.13058 -10.88889 -10.26284 -10.20614 -9.66113 -8.98220 -7.94698 -5.23721 -0.93991 -0.40596 1.36085 1.48000 1.49237 1.59481 1.73467 2.28298 2.42253 2.56963 2.72122 2.77644 3.25245 3.36502 3.39270 3.69912 3.70889 3.86414 3.90673 4.13793 4.20222 4.23927 4.30539 4.38299 4.45348 4.57706 4.60536 4.62248 4.67847 4.82141 4.89413 4.98609 5.03620 5.08213 5.10180 5.22571 5.28790 5.35248 5.45452 5.50673 5.57503 5.67180 6.10275 6.28278 6.29457 6.89441 7.33539 8.11334 8.33273 9.29541 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.002237 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.991961 B =12516.031990 C =13902.021736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.752 5.752 10 C 0.152 3.848 11 C -0.109 4.109 12 C -0.075 4.075 13 C -0.121 4.121 14 C 0.111 3.889 15 N -0.584 5.584 16 C 0.560 3.440 17 O -0.564 6.564 18 C 0.019 3.981 19 N -0.399 5.399 20 C 0.075 3.925 21 C 0.118 3.882 22 F -0.109 7.109 23 C -0.142 4.142 24 C 0.128 3.872 25 F -0.113 7.113 26 C 0.075 3.925 27 C -0.129 4.129 28 H 0.251 0.749 29 H 0.371 0.629 30 H 0.020 0.980 31 H 0.027 0.973 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.221 0.779 40 H 0.194 0.806 41 H 0.082 0.918 42 H 0.154 0.846 43 H 0.050 0.950 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.805 -26.390 -9.273 31.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.026 3.974 11 C -0.147 4.147 12 C -0.094 4.094 13 C -0.159 4.159 14 C -0.011 4.011 15 N -0.315 5.315 16 C 0.348 3.652 17 O -0.444 6.444 18 C -0.117 4.117 19 N -0.109 5.109 20 C -0.087 4.087 21 C 0.096 3.904 22 F -0.087 7.087 23 C -0.168 4.168 24 C 0.105 3.895 25 F -0.091 7.091 26 C -0.046 4.046 27 C -0.167 4.167 28 H 0.060 0.940 29 H 0.203 0.797 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.238 0.762 40 H 0.211 0.789 41 H 0.100 0.900 42 H 0.170 0.830 43 H 0.069 0.931 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.552 -26.148 -8.543 30.665 hybrid contribution -0.671 0.361 -0.673 1.016 sum 12.880 -25.788 -9.216 30.263 Atomic orbital electron populations 1.69838 1.06761 1.26010 1.59811 1.25634 0.96443 1.01334 1.03853 0.85037 0.78338 0.79550 0.76644 1.18712 1.22028 1.22072 1.19719 0.91598 0.85373 1.40794 0.90406 1.42691 1.05671 1.01624 1.89402 1.20882 0.94204 0.84556 0.97752 1.21632 0.97906 0.93905 1.01209 1.21043 0.96993 0.92578 0.98834 1.21888 0.97769 0.93356 1.02882 1.21758 0.93855 0.98419 0.87089 1.48087 1.39303 1.19188 1.24904 1.17927 0.83515 0.82209 0.81593 1.90824 1.37114 1.43727 1.72705 1.21265 0.97014 0.95752 0.97678 1.67765 1.00770 1.20299 1.22067 1.23893 0.98656 0.97447 0.88724 1.18714 0.87383 0.96148 0.88137 1.91634 1.62097 1.95268 1.59679 1.21912 0.92878 1.02373 0.99678 1.18423 0.86371 0.89364 0.95363 1.91629 1.54185 1.67763 1.95506 1.23281 0.90731 0.83035 1.07569 1.22116 0.99499 0.98083 0.96995 0.94041 0.79734 0.96235 0.95492 0.93254 0.92496 0.89875 0.92864 0.89470 0.90013 0.89215 0.76234 0.78913 0.89988 0.83038 0.93121 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.60 13.06 21.65 0.28 -60.31 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 3 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 7 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.75 -39.00 5.60 -343.45 -1.92 -40.93 16 10 C 0.15 5.97 6.02 86.38 0.52 6.49 16 11 C -0.11 -3.43 4.80 30.59 0.15 -3.28 16 12 C -0.08 -1.78 2.15 -10.77 -0.02 -1.80 16 13 C -0.12 -2.63 5.36 30.67 0.16 -2.46 16 14 C 0.11 2.29 6.44 86.36 0.56 2.85 16 15 N -0.58 -12.83 2.97 -821.44 -2.44 -15.27 16 16 C 0.56 14.05 7.65 86.80 0.66 14.71 16 17 O -0.56 -17.79 14.78 -3.86 -0.06 -17.85 16 18 C 0.02 0.37 6.61 41.88 0.28 0.65 16 19 N -0.40 -5.61 6.07 -184.61 -1.12 -6.73 16 20 C 0.07 0.59 11.17 84.94 0.95 1.54 16 21 C 0.12 0.95 7.35 22.57 0.17 1.11 16 22 F -0.11 -0.85 17.28 44.97 0.78 -0.07 16 23 C -0.14 -1.38 10.14 22.53 0.23 -1.15 16 24 C 0.13 2.20 7.30 22.75 0.17 2.36 16 25 F -0.11 -2.52 15.58 44.97 0.70 -1.82 16 26 C 0.08 1.39 5.93 86.51 0.51 1.90 16 27 C -0.13 -2.85 5.16 30.82 0.16 -2.69 16 28 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.37 20.64 7.67 -92.71 -0.71 19.93 16 30 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.03 1.04 6.53 -2.39 -0.02 1.02 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.88 7.00 -2.39 -0.02 1.87 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.22 0.17 8.06 -2.91 -0.02 0.15 16 40 H 0.19 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.15 2.55 3.94 -74.03 -0.29 2.26 16 43 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.86 6.50 -2.39 -0.02 1.84 16 Total: -1.00 -73.50 364.95 4.10 -69.41 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.05 Total: 22.20 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.79 Total: 3.09 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -5.20 Total: -123.24 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.06 Total: -17.85 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 1.48 Total: -1.89 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -73.50 4.10 -69.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269877310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.880 kcal (2) G-P(sol) polarization free energy of solvation -73.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds