Wall clock time and date at job start Tue Mar 31 2020 22:37:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.35494 * 126.98130 * 2 1
4 4 N 1.30517 * 107.30719 * 180.26258 * 3 2 1
5 5 N 1.28592 * 109.67548 * 359.55690 * 4 3 2
6 6 C 1.30526 * 109.67015 * 0.44934 * 5 4 3
7 7 C 1.50703 * 126.34705 * 179.72820 * 6 5 4
8 8 N 1.46897 * 109.47169 * 270.00381 * 7 6 5
9 9 C 1.46900 * 111.00054 * 179.97438 * 8 7 6
10 10 C 1.53005 * 109.47317 * 174.92987 * 9 8 7
11 11 H 1.08996 * 109.86796 * 54.54330 * 10 9 8
12 12 C 1.54326 * 109.88367 * 293.53076 * 10 9 8
13 13 C 1.55398 * 102.82816 * 218.47854 * 12 10 9
14 14 C 1.54910 * 101.66432 * 35.34096 * 13 12 10
15 15 N 1.47019 * 109.88227 * 175.56265 * 10 9 8
16 16 C 1.34777 * 125.64703 * 298.32299 * 15 10 9
17 17 O 1.21280 * 120.00154 * 4.93307 * 16 15 10
18 18 C 1.50701 * 120.00162 * 184.93356 * 16 15 10
19 19 S 1.80994 * 109.47470 * 180.02562 * 18 16 15
20 20 C 1.76197 * 100.00226 * 180.02562 * 19 18 16
21 21 H 1.08006 * 119.99704 * 359.97438 * 20 19 18
22 22 C 1.38795 * 120.00064 * 179.97438 * 20 19 18
23 23 N 1.31629 * 120.00191 * 359.97438 * 22 20 19
24 24 Si 1.86803 * 119.99945 * 179.97438 * 22 20 19
25 25 H 1.48497 * 109.47024 * 59.99948 * 24 22 20
26 26 H 1.48498 * 109.47010 * 180.02562 * 24 22 20
27 27 H 1.48498 * 109.47490 * 299.99974 * 24 22 20
28 28 H 1.08999 * 109.47116 * 90.02926 * 1 2 3
29 29 H 1.09001 * 109.47120 * 210.02854 * 1 2 3
30 30 H 1.08999 * 109.47424 * 330.02475 * 1 2 3
31 31 H 1.07998 * 126.34404 * 359.97438 * 3 2 1
32 32 H 1.09003 * 109.46594 * 30.00011 * 7 6 5
33 33 H 1.09001 * 109.47181 * 149.99968 * 7 6 5
34 34 H 1.00899 * 111.00418 * 56.04054 * 8 7 6
35 35 H 1.08992 * 109.47236 * 294.93096 * 9 8 7
36 36 H 1.09000 * 109.46993 * 54.93385 * 9 8 7
37 37 H 1.09000 * 110.71810 * 336.75241 * 12 10 9
38 38 H 1.09000 * 110.71692 * 100.02273 * 12 10 9
39 39 H 1.08989 * 110.89423 * 277.26910 * 13 12 10
40 40 H 1.08996 * 111.06695 * 153.48385 * 13 12 10
41 41 H 1.09000 * 110.36433 * 204.23902 * 14 13 12
42 42 H 1.08996 * 110.46691 * 81.95721 * 14 13 12
43 43 H 1.09005 * 109.46687 * 300.00406 * 18 16 15
44 44 H 1.08997 * 109.47027 * 59.99456 * 18 16 15
45 45 H 0.96997 * 120.00027 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2801 1.0824 0.0000
4 7 3.5090 0.6430 -0.0057
5 7 3.5091 -0.6429 0.0001
6 6 2.2800 -1.0824 0.0002
7 6 1.8476 -2.5260 0.0002
8 7 1.7072 -2.9952 -1.3847
9 6 1.2865 -4.4021 -1.4238
10 6 1.0291 -4.8174 -2.8737
11 1 1.9094 -4.6074 -3.4811
12 6 -0.1884 -4.0502 -3.4312
13 6 -0.9049 -5.1229 -4.2977
14 6 -0.6520 -6.4105 -3.4745
15 7 0.7104 -6.2514 -2.9340
16 6 1.5285 -7.2544 -2.5582
17 8 2.5977 -7.0042 -2.0433
18 6 1.1147 -8.6867 -2.7778
19 16 2.4153 -9.7901 -2.1721
20 6 1.6894 -11.3519 -2.5439
21 1 0.7162 -11.3978 -3.0102
22 6 2.3681 -12.5232 -2.2376
23 7 3.5543 -12.4674 -1.6698
24 14 1.5981 -14.1791 -2.6312
25 1 1.3550 -14.2770 -4.0929
26 1 2.5175 -15.2656 -2.2079
27 1 0.3094 -14.3109 -1.9052
28 1 -0.3633 -0.0005 -1.0276
29 1 -0.3633 -0.8897 0.5143
30 1 -0.3634 0.8902 0.5134
31 1 1.9702 2.1169 -0.0004
32 1 2.5960 -3.1293 0.5141
33 1 0.8908 -2.6187 0.5141
34 1 2.5634 -2.8597 -1.9010
35 1 2.0719 -5.0281 -1.0005
36 1 0.3721 -4.5242 -0.8432
37 1 -0.8358 -3.7136 -2.6216
38 1 0.1340 -3.2084 -4.0441
39 1 -0.4480 -5.1940 -5.2846
40 1 -1.9716 -4.9135 -4.3775
41 1 -0.7045 -7.2886 -4.1181
42 1 -1.3749 -6.4922 -2.6628
43 1 0.1895 -8.8847 -2.2366
44 1 0.9571 -8.8602 -3.8423
45 1 4.0287 -13.2859 -1.4561
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001270007538.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:37:13
Heat of formation + Delta-G solvation = 53.364806 kcal
Electronic energy + Delta-G solvation = -26431.879620 eV
Core-core repulsion = 22612.329528 eV
Total energy + Delta-G solvation = -3819.550092 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.147 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.38795 -40.06096 -37.43957 -36.30570 -35.28348 -32.44229 -32.14819 -31.56011
-29.91309 -28.58123 -28.04389 -26.38097 -25.50608 -24.13478 -22.68323 -22.53506
-21.20696 -21.07758 -19.05791 -17.74695 -17.48413 -16.97034 -16.67154 -16.42255
-15.87869 -15.43461 -14.98012 -14.81627 -14.80706 -14.63381 -14.25671 -13.87420
-13.75821 -13.69551 -13.40848 -13.23604 -12.89314 -12.66449 -12.56447 -12.33082
-12.08421 -11.76077 -11.66498 -11.37490 -11.06374 -11.05220 -11.04261 -10.90592
-10.77758 -10.62248 -10.52304 -9.83697 -9.63893 -9.42575 -9.07150 -8.80381
-8.52146 -8.25142 -6.51743 -6.22532 -3.93565 1.44845 2.13354 2.57639
2.85812 3.01482 3.22375 3.23951 3.28046 3.54727 3.83725 4.13400
4.18973 4.20819 4.24659 4.39171 4.42993 4.53610 4.61605 4.72647
4.86516 4.94595 5.08261 5.09611 5.12438 5.19119 5.21975 5.29502
5.42854 5.52825 5.58132 5.60599 5.64122 5.73348 5.80377 5.81841
5.82963 5.93008 6.07572 6.11736 6.35778 6.48556 6.60675 6.96391
7.57860 7.65023 8.33760 8.45264 8.52626 9.22455 10.84802
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.019621 B = 0.002102 C = 0.001950
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1426.676477 B =13316.554063 C =14357.355981
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.468 5.468
3 C 0.146 3.854
4 N -0.297 5.297
5 N -0.289 5.289
6 C 0.184 3.816
7 C 0.145 3.855
8 N -0.682 5.682
9 C 0.046 3.954
10 C 0.144 3.856
11 H 0.073 0.927
12 C -0.111 4.111
13 C -0.137 4.137
14 C 0.101 3.899
15 N -0.623 5.623
16 C 0.549 3.451
17 O -0.513 6.513
18 C -0.147 4.147
19 S -0.060 6.060
20 C -0.536 4.536
21 H 0.072 0.928
22 C 0.074 3.926
23 N -0.867 5.867
24 Si 0.919 3.081
25 H -0.274 1.274
26 H -0.283 1.283
27 H -0.274 1.274
28 H 0.086 0.914
29 H 0.091 0.909
30 H 0.089 0.911
31 H 0.218 0.782
32 H 0.072 0.928
33 H 0.090 0.910
34 H 0.351 0.649
35 H 0.060 0.940
36 H 0.074 0.926
37 H 0.076 0.924
38 H 0.079 0.921
39 H 0.075 0.925
40 H 0.081 0.919
41 H 0.079 0.921
42 H 0.067 0.933
43 H 0.088 0.912
44 H 0.089 0.911
45 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.964 25.586 -0.470 29.644
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.159 5.159
3 C -0.142 4.142
4 N -0.137 5.137
5 N -0.130 5.130
6 C -0.084 4.084
7 C 0.014 3.986
8 N -0.315 5.315
9 C -0.084 4.084
10 C 0.040 3.960
11 H 0.091 0.909
12 C -0.149 4.149
13 C -0.175 4.175
14 C -0.022 4.022
15 N -0.360 5.360
16 C 0.337 3.663
17 O -0.387 6.387
18 C -0.298 4.298
19 S 0.167 5.833
20 C -0.684 4.684
21 H 0.090 0.910
22 C -0.136 4.136
23 N -0.502 5.502
24 Si 0.745 3.255
25 H -0.199 1.199
26 H -0.208 1.208
27 H -0.199 1.199
28 H 0.105 0.895
29 H 0.109 0.891
30 H 0.108 0.892
31 H 0.234 0.766
32 H 0.090 0.910
33 H 0.108 0.892
34 H 0.169 0.831
35 H 0.078 0.922
36 H 0.092 0.908
37 H 0.095 0.905
38 H 0.098 0.902
39 H 0.094 0.906
40 H 0.100 0.900
41 H 0.097 0.903
42 H 0.085 0.915
43 H 0.106 0.894
44 H 0.107 0.893
45 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -12.305 26.013 0.337 28.778
hybrid contribution -2.496 -1.649 -0.604 3.052
sum -14.801 24.364 -0.267 28.508
Atomic orbital electron populations
1.22102 0.75147 1.04924 1.04569 1.46146 1.09321 1.06636 1.53758
1.26446 0.87293 0.94949 1.05501 1.74270 1.18129 1.03284 1.17987
1.74318 1.17120 1.03250 1.18330 1.24732 0.87161 0.92166 1.04387
1.20159 1.01609 0.85048 0.91814 1.60458 1.39219 1.20280 1.11562
1.22375 1.01498 0.87187 0.97322 1.21352 0.98566 0.80601 0.95499
0.90908 1.22588 0.95749 0.97222 0.99332 1.22862 1.01146 0.94502
0.98978 1.22290 0.83725 0.98952 0.97271 1.48566 1.16278 1.05246
1.65944 1.20056 0.83304 0.85975 0.76943 1.90698 1.22410 1.84088
1.41507 1.23515 1.06539 0.94616 1.05096 1.85404 1.21243 0.97221
1.79465 1.22810 1.06920 0.91510 1.47174 0.90998 1.24992 0.94813
0.99154 0.94617 1.70005 1.12270 1.28921 1.39037 0.86225 0.78932
0.81479 0.78870 1.19929 1.20798 1.19946 0.89503 0.89068 0.89195
0.76588 0.90960 0.89193 0.83082 0.92155 0.90801 0.90500 0.90214
0.90649 0.90013 0.90309 0.91462 0.89388 0.89301 0.92102
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.21 11.04 59.85 0.66 0.87 16
2 N -0.47 -3.41 3.15 -122.69 -0.39 -3.79 16
3 C 0.15 1.18 12.74 -89.95 -1.15 0.03 16
4 N -0.30 -3.81 12.21 29.69 0.36 -3.44 16
5 N -0.29 -3.97 12.21 32.80 0.40 -3.57 16
6 C 0.18 1.88 7.54 -154.98 -1.17 0.71 16
7 C 0.15 1.28 6.03 -4.98 -0.03 1.25 16
8 N -0.68 -6.32 6.25 -115.06 -0.72 -7.04 16
9 C 0.05 0.51 5.07 -3.82 -0.02 0.49 16
10 C 0.14 1.62 3.12 -66.95 -0.21 1.41 16
11 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
12 C -0.11 -0.86 6.29 -24.76 -0.16 -1.01 16
13 C -0.14 -1.01 7.09 -24.45 -0.17 -1.18 16
14 C 0.10 1.01 6.74 -2.53 -0.02 0.99 16
15 N -0.62 -8.48 3.06 -163.02 -0.50 -8.98 16
16 C 0.55 10.23 7.68 -10.98 -0.08 10.15 16
17 O -0.51 -11.44 14.66 5.56 0.08 -11.36 16
18 C -0.15 -2.97 5.09 36.01 0.18 -2.78 16
19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16
20 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16
21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16
22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
23 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16
24 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16
25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
28 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16
29 H 0.09 0.20 7.20 -51.93 -0.37 -0.18 16
30 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16
31 H 0.22 0.73 8.06 -52.49 -0.42 0.31 16
32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.09 0.60 7.22 -51.93 -0.37 0.22 16
34 H 0.35 3.70 8.78 -39.29 -0.34 3.35 16
35 H 0.06 0.89 6.57 -51.93 -0.34 0.55 16
36 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16
37 H 0.08 0.54 7.78 -51.93 -0.40 0.13 16
38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
39 H 0.07 0.58 8.14 -51.94 -0.42 0.16 16
40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16
41 H 0.08 0.79 7.47 -51.93 -0.39 0.41 16
42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
43 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16
44 H 0.09 1.68 7.95 -51.92 -0.41 1.26 16
45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16
LS Contribution 388.09 15.07 5.85 5.85
Total: -1.00 -37.65 388.09 -10.20 -47.85
By element:
Atomic # 1 Polarization: 6.24 SS G_CDS: -6.83 Total: -0.59 kcal
Atomic # 6 Polarization: -0.02 SS G_CDS: -1.96 Total: -1.98 kcal
Atomic # 7 Polarization: -52.11 SS G_CDS: -0.11 Total: -52.22 kcal
Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal
Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal
Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -37.65 -10.20 -47.85 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270007538.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.217 kcal
(2) G-P(sol) polarization free energy of solvation -37.649 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.852 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.365 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds