Wall clock time and date at job start Tue Mar 31 2020 22:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.98130 * 2 1 4 4 N 1.30517 * 107.30719 * 180.26258 * 3 2 1 5 5 N 1.28592 * 109.67548 * 359.55690 * 4 3 2 6 6 C 1.30526 * 109.67015 * 0.44934 * 5 4 3 7 7 C 1.50703 * 126.34705 * 179.72820 * 6 5 4 8 8 N 1.46897 * 109.47169 * 270.00381 * 7 6 5 9 9 C 1.46900 * 111.00054 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47317 * 174.92987 * 9 8 7 11 11 H 1.08996 * 109.86796 * 54.54330 * 10 9 8 12 12 C 1.54326 * 109.88367 * 293.53076 * 10 9 8 13 13 C 1.55398 * 102.82816 * 218.47854 * 12 10 9 14 14 C 1.54910 * 101.66432 * 35.34096 * 13 12 10 15 15 N 1.47019 * 109.88227 * 175.56265 * 10 9 8 16 16 C 1.34777 * 125.64703 * 298.32299 * 15 10 9 17 17 O 1.21280 * 120.00154 * 4.93307 * 16 15 10 18 18 C 1.50701 * 120.00162 * 184.93356 * 16 15 10 19 19 S 1.80994 * 109.47470 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00226 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99704 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00064 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00191 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99945 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47024 * 59.99948 * 24 22 20 26 26 H 1.48498 * 109.47010 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47490 * 299.99974 * 24 22 20 28 28 H 1.08999 * 109.47116 * 90.02926 * 1 2 3 29 29 H 1.09001 * 109.47120 * 210.02854 * 1 2 3 30 30 H 1.08999 * 109.47424 * 330.02475 * 1 2 3 31 31 H 1.07998 * 126.34404 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.46594 * 30.00011 * 7 6 5 33 33 H 1.09001 * 109.47181 * 149.99968 * 7 6 5 34 34 H 1.00899 * 111.00418 * 56.04054 * 8 7 6 35 35 H 1.08992 * 109.47236 * 294.93096 * 9 8 7 36 36 H 1.09000 * 109.46993 * 54.93385 * 9 8 7 37 37 H 1.09000 * 110.71810 * 336.75241 * 12 10 9 38 38 H 1.09000 * 110.71692 * 100.02273 * 12 10 9 39 39 H 1.08989 * 110.89423 * 277.26910 * 13 12 10 40 40 H 1.08996 * 111.06695 * 153.48385 * 13 12 10 41 41 H 1.09000 * 110.36433 * 204.23902 * 14 13 12 42 42 H 1.08996 * 110.46691 * 81.95721 * 14 13 12 43 43 H 1.09005 * 109.46687 * 300.00406 * 18 16 15 44 44 H 1.08997 * 109.47027 * 59.99456 * 18 16 15 45 45 H 0.96997 * 120.00027 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5090 0.6430 -0.0057 5 7 3.5091 -0.6429 0.0001 6 6 2.2800 -1.0824 0.0002 7 6 1.8476 -2.5260 0.0002 8 7 1.7072 -2.9952 -1.3847 9 6 1.2865 -4.4021 -1.4238 10 6 1.0291 -4.8174 -2.8737 11 1 1.9094 -4.6074 -3.4811 12 6 -0.1884 -4.0502 -3.4312 13 6 -0.9049 -5.1229 -4.2977 14 6 -0.6520 -6.4105 -3.4745 15 7 0.7104 -6.2514 -2.9340 16 6 1.5285 -7.2544 -2.5582 17 8 2.5977 -7.0042 -2.0433 18 6 1.1147 -8.6867 -2.7778 19 16 2.4153 -9.7901 -2.1721 20 6 1.6894 -11.3519 -2.5439 21 1 0.7162 -11.3978 -3.0102 22 6 2.3681 -12.5232 -2.2376 23 7 3.5543 -12.4674 -1.6698 24 14 1.5981 -14.1791 -2.6312 25 1 1.3550 -14.2770 -4.0929 26 1 2.5175 -15.2656 -2.2079 27 1 0.3094 -14.3109 -1.9052 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 1.9702 2.1169 -0.0004 32 1 2.5960 -3.1293 0.5141 33 1 0.8908 -2.6187 0.5141 34 1 2.5634 -2.8597 -1.9010 35 1 2.0719 -5.0281 -1.0005 36 1 0.3721 -4.5242 -0.8432 37 1 -0.8358 -3.7136 -2.6216 38 1 0.1340 -3.2084 -4.0441 39 1 -0.4480 -5.1940 -5.2846 40 1 -1.9716 -4.9135 -4.3775 41 1 -0.7045 -7.2886 -4.1181 42 1 -1.3749 -6.4922 -2.6628 43 1 0.1895 -8.8847 -2.2366 44 1 0.9571 -8.8602 -3.8423 45 1 4.0287 -13.2859 -1.4561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270007538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:13 Heat of formation + Delta-G solvation = 53.364806 kcal Electronic energy + Delta-G solvation = -26431.879620 eV Core-core repulsion = 22612.329528 eV Total energy + Delta-G solvation = -3819.550092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.38795 -40.06096 -37.43957 -36.30570 -35.28348 -32.44229 -32.14819 -31.56011 -29.91309 -28.58123 -28.04389 -26.38097 -25.50608 -24.13478 -22.68323 -22.53506 -21.20696 -21.07758 -19.05791 -17.74695 -17.48413 -16.97034 -16.67154 -16.42255 -15.87869 -15.43461 -14.98012 -14.81627 -14.80706 -14.63381 -14.25671 -13.87420 -13.75821 -13.69551 -13.40848 -13.23604 -12.89314 -12.66449 -12.56447 -12.33082 -12.08421 -11.76077 -11.66498 -11.37490 -11.06374 -11.05220 -11.04261 -10.90592 -10.77758 -10.62248 -10.52304 -9.83697 -9.63893 -9.42575 -9.07150 -8.80381 -8.52146 -8.25142 -6.51743 -6.22532 -3.93565 1.44845 2.13354 2.57639 2.85812 3.01482 3.22375 3.23951 3.28046 3.54727 3.83725 4.13400 4.18973 4.20819 4.24659 4.39171 4.42993 4.53610 4.61605 4.72647 4.86516 4.94595 5.08261 5.09611 5.12438 5.19119 5.21975 5.29502 5.42854 5.52825 5.58132 5.60599 5.64122 5.73348 5.80377 5.81841 5.82963 5.93008 6.07572 6.11736 6.35778 6.48556 6.60675 6.96391 7.57860 7.65023 8.33760 8.45264 8.52626 9.22455 10.84802 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019621 B = 0.002102 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.676477 B =13316.554063 C =14357.355981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.468 5.468 3 C 0.146 3.854 4 N -0.297 5.297 5 N -0.289 5.289 6 C 0.184 3.816 7 C 0.145 3.855 8 N -0.682 5.682 9 C 0.046 3.954 10 C 0.144 3.856 11 H 0.073 0.927 12 C -0.111 4.111 13 C -0.137 4.137 14 C 0.101 3.899 15 N -0.623 5.623 16 C 0.549 3.451 17 O -0.513 6.513 18 C -0.147 4.147 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.218 0.782 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.351 0.649 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.964 25.586 -0.470 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.159 5.159 3 C -0.142 4.142 4 N -0.137 5.137 5 N -0.130 5.130 6 C -0.084 4.084 7 C 0.014 3.986 8 N -0.315 5.315 9 C -0.084 4.084 10 C 0.040 3.960 11 H 0.091 0.909 12 C -0.149 4.149 13 C -0.175 4.175 14 C -0.022 4.022 15 N -0.360 5.360 16 C 0.337 3.663 17 O -0.387 6.387 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.234 0.766 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.169 0.831 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.305 26.013 0.337 28.778 hybrid contribution -2.496 -1.649 -0.604 3.052 sum -14.801 24.364 -0.267 28.508 Atomic orbital electron populations 1.22102 0.75147 1.04924 1.04569 1.46146 1.09321 1.06636 1.53758 1.26446 0.87293 0.94949 1.05501 1.74270 1.18129 1.03284 1.17987 1.74318 1.17120 1.03250 1.18330 1.24732 0.87161 0.92166 1.04387 1.20159 1.01609 0.85048 0.91814 1.60458 1.39219 1.20280 1.11562 1.22375 1.01498 0.87187 0.97322 1.21352 0.98566 0.80601 0.95499 0.90908 1.22588 0.95749 0.97222 0.99332 1.22862 1.01146 0.94502 0.98978 1.22290 0.83725 0.98952 0.97271 1.48566 1.16278 1.05246 1.65944 1.20056 0.83304 0.85975 0.76943 1.90698 1.22410 1.84088 1.41507 1.23515 1.06539 0.94616 1.05096 1.85404 1.21243 0.97221 1.79465 1.22810 1.06920 0.91510 1.47174 0.90998 1.24992 0.94813 0.99154 0.94617 1.70005 1.12270 1.28921 1.39037 0.86225 0.78932 0.81479 0.78870 1.19929 1.20798 1.19946 0.89503 0.89068 0.89195 0.76588 0.90960 0.89193 0.83082 0.92155 0.90801 0.90500 0.90214 0.90649 0.90013 0.90309 0.91462 0.89388 0.89301 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.21 11.04 59.85 0.66 0.87 16 2 N -0.47 -3.41 3.15 -122.69 -0.39 -3.79 16 3 C 0.15 1.18 12.74 -89.95 -1.15 0.03 16 4 N -0.30 -3.81 12.21 29.69 0.36 -3.44 16 5 N -0.29 -3.97 12.21 32.80 0.40 -3.57 16 6 C 0.18 1.88 7.54 -154.98 -1.17 0.71 16 7 C 0.15 1.28 6.03 -4.98 -0.03 1.25 16 8 N -0.68 -6.32 6.25 -115.06 -0.72 -7.04 16 9 C 0.05 0.51 5.07 -3.82 -0.02 0.49 16 10 C 0.14 1.62 3.12 -66.95 -0.21 1.41 16 11 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.11 -0.86 6.29 -24.76 -0.16 -1.01 16 13 C -0.14 -1.01 7.09 -24.45 -0.17 -1.18 16 14 C 0.10 1.01 6.74 -2.53 -0.02 0.99 16 15 N -0.62 -8.48 3.06 -163.02 -0.50 -8.98 16 16 C 0.55 10.23 7.68 -10.98 -0.08 10.15 16 17 O -0.51 -11.44 14.66 5.56 0.08 -11.36 16 18 C -0.15 -2.97 5.09 36.01 0.18 -2.78 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.20 7.20 -51.93 -0.37 -0.18 16 30 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.22 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.60 7.22 -51.93 -0.37 0.22 16 34 H 0.35 3.70 8.78 -39.29 -0.34 3.35 16 35 H 0.06 0.89 6.57 -51.93 -0.34 0.55 16 36 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 37 H 0.08 0.54 7.78 -51.93 -0.40 0.13 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.58 8.14 -51.94 -0.42 0.16 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.79 7.47 -51.93 -0.39 0.41 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 44 H 0.09 1.68 7.95 -51.92 -0.41 1.26 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -37.65 388.09 -10.20 -47.85 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.83 Total: -0.59 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.96 Total: -1.98 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.11 Total: -52.22 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.65 -10.20 -47.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270007538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.217 kcal (2) G-P(sol) polarization free energy of solvation -37.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds