Wall clock time and date at job start Tue Mar 31 2020 22:37:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.35494 * 126.98130 * 2 1
4 4 N 1.30517 * 107.30719 * 180.26258 * 3 2 1
5 5 N 1.28592 * 109.67548 * 359.55690 * 4 3 2
6 6 C 1.30526 * 109.67015 * 0.44934 * 5 4 3
7 7 C 1.50703 * 126.34705 * 179.72820 * 6 5 4
8 8 N 1.46897 * 109.47169 * 270.00381 * 7 6 5
9 9 C 1.46900 * 111.00054 * 179.97438 * 8 7 6
10 10 C 1.53005 * 109.47317 * 174.92987 * 9 8 7
11 11 H 1.08996 * 109.86796 * 54.54330 * 10 9 8
12 12 C 1.54326 * 109.88367 * 293.53076 * 10 9 8
13 13 C 1.55398 * 102.82816 * 218.47854 * 12 10 9
14 14 C 1.54910 * 101.66432 * 35.34096 * 13 12 10
15 15 N 1.47019 * 109.88227 * 175.56265 * 10 9 8
16 16 C 1.34777 * 125.64703 * 298.32299 * 15 10 9
17 17 O 1.21280 * 120.00154 * 4.93307 * 16 15 10
18 18 C 1.50701 * 120.00162 * 184.93356 * 16 15 10
19 19 S 1.80994 * 109.47470 * 180.02562 * 18 16 15
20 20 C 1.76197 * 100.00226 * 180.02562 * 19 18 16
21 21 H 1.08006 * 119.99704 * 359.97438 * 20 19 18
22 22 C 1.38795 * 120.00064 * 179.97438 * 20 19 18
23 23 N 1.31629 * 120.00191 * 359.97438 * 22 20 19
24 24 Si 1.86803 * 119.99945 * 179.97438 * 22 20 19
25 25 H 1.48497 * 109.47024 * 59.99948 * 24 22 20
26 26 H 1.48498 * 109.47010 * 180.02562 * 24 22 20
27 27 H 1.48498 * 109.47490 * 299.99974 * 24 22 20
28 28 H 1.08999 * 109.47116 * 90.02926 * 1 2 3
29 29 H 1.09001 * 109.47120 * 210.02854 * 1 2 3
30 30 H 1.08999 * 109.47424 * 330.02475 * 1 2 3
31 31 H 1.07998 * 126.34404 * 359.97438 * 3 2 1
32 32 H 1.09003 * 109.46594 * 30.00011 * 7 6 5
33 33 H 1.09001 * 109.47181 * 149.99968 * 7 6 5
34 34 H 1.00899 * 111.00418 * 56.04054 * 8 7 6
35 35 H 1.08992 * 109.47236 * 294.93096 * 9 8 7
36 36 H 1.09000 * 109.46993 * 54.93385 * 9 8 7
37 37 H 1.09000 * 110.71810 * 336.75241 * 12 10 9
38 38 H 1.09000 * 110.71692 * 100.02273 * 12 10 9
39 39 H 1.08989 * 110.89423 * 277.26910 * 13 12 10
40 40 H 1.08996 * 111.06695 * 153.48385 * 13 12 10
41 41 H 1.09000 * 110.36433 * 204.23902 * 14 13 12
42 42 H 1.08996 * 110.46691 * 81.95721 * 14 13 12
43 43 H 1.09005 * 109.46687 * 300.00406 * 18 16 15
44 44 H 1.08997 * 109.47027 * 59.99456 * 18 16 15
45 45 H 0.96997 * 120.00027 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2801 1.0824 0.0000
4 7 3.5090 0.6430 -0.0057
5 7 3.5091 -0.6429 0.0001
6 6 2.2800 -1.0824 0.0002
7 6 1.8476 -2.5260 0.0002
8 7 1.7072 -2.9952 -1.3847
9 6 1.2865 -4.4021 -1.4238
10 6 1.0291 -4.8174 -2.8737
11 1 1.9094 -4.6074 -3.4811
12 6 -0.1884 -4.0502 -3.4312
13 6 -0.9049 -5.1229 -4.2977
14 6 -0.6520 -6.4105 -3.4745
15 7 0.7104 -6.2514 -2.9340
16 6 1.5285 -7.2544 -2.5582
17 8 2.5977 -7.0042 -2.0433
18 6 1.1147 -8.6867 -2.7778
19 16 2.4153 -9.7901 -2.1721
20 6 1.6894 -11.3519 -2.5439
21 1 0.7162 -11.3978 -3.0102
22 6 2.3681 -12.5232 -2.2376
23 7 3.5543 -12.4674 -1.6698
24 14 1.5981 -14.1791 -2.6312
25 1 1.3550 -14.2770 -4.0929
26 1 2.5175 -15.2656 -2.2079
27 1 0.3094 -14.3109 -1.9052
28 1 -0.3633 -0.0005 -1.0276
29 1 -0.3633 -0.8897 0.5143
30 1 -0.3634 0.8902 0.5134
31 1 1.9702 2.1169 -0.0004
32 1 2.5960 -3.1293 0.5141
33 1 0.8908 -2.6187 0.5141
34 1 2.5634 -2.8597 -1.9010
35 1 2.0719 -5.0281 -1.0005
36 1 0.3721 -4.5242 -0.8432
37 1 -0.8358 -3.7136 -2.6216
38 1 0.1340 -3.2084 -4.0441
39 1 -0.4480 -5.1940 -5.2846
40 1 -1.9716 -4.9135 -4.3775
41 1 -0.7045 -7.2886 -4.1181
42 1 -1.3749 -6.4922 -2.6628
43 1 0.1895 -8.8847 -2.2366
44 1 0.9571 -8.8602 -3.8423
45 1 4.0287 -13.2859 -1.4561
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001270007538.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:37:13
Heat of formation + Delta-G solvation = 26.965462 kcal
Electronic energy + Delta-G solvation = -26433.024382 eV
Core-core repulsion = 22612.329528 eV
Total energy + Delta-G solvation = -3820.694853 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.147 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-44.08433 -41.21590 -38.65714 -37.14678 -35.87072 -34.59809 -33.19193 -32.44307
-30.89070 -29.85418 -28.43485 -27.67432 -27.13830 -25.02653 -23.52657 -23.30762
-21.98552 -21.81065 -20.38798 -19.49271 -18.26620 -18.03671 -17.51035 -17.26377
-16.89198 -16.72621 -16.47875 -16.07411 -16.01619 -15.64305 -15.38040 -15.06297
-14.64951 -14.30526 -14.22194 -14.15921 -13.96068 -13.77962 -13.47574 -13.33583
-13.15360 -13.13523 -12.87566 -12.67061 -12.62470 -12.52809 -12.06526 -11.84060
-11.74316 -11.55009 -11.34428 -11.13810 -11.06684 -10.94134 -10.39538 -10.29236
-9.77447 -9.58400 -8.69253 -8.35414 -6.14406 0.80102 1.23253 1.43382
1.44199 1.54144 1.55561 1.63479 1.82500 2.07599 2.26677 2.98526
3.02013 3.25065 3.41506 3.59730 3.68218 3.71788 3.89258 3.92294
3.98830 4.04448 4.20821 4.28237 4.30111 4.34780 4.43570 4.48510
4.51293 4.61285 4.67591 4.77329 4.78599 4.90082 4.96458 5.04450
5.08661 5.15953 5.19903 5.38901 5.40117 5.45917 5.69697 5.97979
6.04410 6.18382 6.41775 7.05360 7.13069 7.72069 8.73554
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.019621 B = 0.002102 C = 0.001950
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1426.676477 B =13316.554063 C =14357.355981
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.067 3.933
2 N -0.461 5.461
3 C 0.164 3.836
4 N -0.354 5.354
5 N -0.344 5.344
6 C 0.179 3.821
7 C 0.149 3.851
8 N -0.663 5.663
9 C 0.058 3.942
10 C 0.137 3.863
11 H 0.053 0.947
12 C -0.097 4.097
13 C -0.125 4.125
14 C 0.088 3.912
15 N -0.613 5.613
16 C 0.545 3.455
17 O -0.563 6.563
18 C -0.119 4.119
19 S -0.153 6.153
20 C -0.546 4.546
21 H 0.083 0.917
22 C 0.012 3.988
23 N -0.912 5.912
24 Si 0.999 3.001
25 H -0.261 1.261
26 H -0.280 1.280
27 H -0.260 1.260
28 H 0.098 0.902
29 H 0.099 0.901
30 H 0.119 0.881
31 H 0.263 0.737
32 H 0.050 0.950
33 H 0.120 0.880
34 H 0.341 0.659
35 H 0.014 0.986
36 H 0.090 0.910
37 H 0.095 0.905
38 H 0.091 0.909
39 H 0.072 0.928
40 H 0.114 0.886
41 H 0.079 0.921
42 H 0.087 0.913
43 H 0.106 0.894
44 H 0.104 0.896
45 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.631 26.963 -1.532 33.387
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 N -0.150 5.150
3 C -0.125 4.125
4 N -0.193 5.193
5 N -0.185 5.185
6 C -0.091 4.091
7 C 0.018 3.982
8 N -0.294 5.294
9 C -0.072 4.072
10 C 0.034 3.966
11 H 0.071 0.929
12 C -0.134 4.134
13 C -0.163 4.163
14 C -0.034 4.034
15 N -0.348 5.348
16 C 0.333 3.667
17 O -0.441 6.441
18 C -0.270 4.270
19 S 0.074 5.926
20 C -0.693 4.693
21 H 0.101 0.899
22 C -0.193 4.193
23 N -0.548 5.548
24 Si 0.821 3.179
25 H -0.186 1.186
26 H -0.205 1.205
27 H -0.185 1.185
28 H 0.116 0.884
29 H 0.118 0.882
30 H 0.137 0.863
31 H 0.279 0.721
32 H 0.068 0.932
33 H 0.137 0.863
34 H 0.158 0.842
35 H 0.033 0.967
36 H 0.109 0.891
37 H 0.114 0.886
38 H 0.110 0.890
39 H 0.091 0.909
40 H 0.133 0.867
41 H 0.097 0.903
42 H 0.105 0.895
43 H 0.125 0.875
44 H 0.122 0.878
45 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -17.048 27.435 -0.748 32.309
hybrid contribution -1.145 -1.895 -0.288 2.233
sum -18.192 25.540 -1.037 31.374
Atomic orbital electron populations
1.22507 0.72099 1.06899 1.05900 1.46379 1.10932 1.05336 1.52383
1.27267 0.86182 0.96682 1.02336 1.74147 1.21105 1.03188 1.20839
1.74196 1.19578 1.04250 1.20473 1.24745 0.87013 0.93100 1.04194
1.20188 1.02364 0.84284 0.91383 1.60517 1.38421 1.18764 1.11723
1.22196 1.00607 0.87239 0.97190 1.21584 1.00009 0.79539 0.95512
0.92904 1.22564 0.93917 0.96992 0.99962 1.22866 1.03045 0.92326
0.98048 1.22695 0.81608 1.00732 0.98355 1.48519 1.17036 1.05340
1.63904 1.19782 0.83331 0.86352 0.77220 1.90686 1.24669 1.84660
1.44072 1.23306 1.04037 0.94069 1.05622 1.85611 1.26196 0.99981
1.80781 1.23153 1.07316 0.91715 1.47157 0.89852 1.26160 0.95216
1.03771 0.94113 1.70183 1.14098 1.30122 1.40416 0.84990 0.78184
0.75518 0.79226 1.18598 1.20468 1.18477 0.88386 0.88210 0.86262
0.72141 0.93190 0.86254 0.84173 0.96717 0.89132 0.88605 0.89016
0.90887 0.86735 0.90278 0.89525 0.87531 0.87794 0.91996
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.11 11.04 127.77 1.41 1.52 16
2 N -0.46 -5.72 3.15 -542.08 -1.71 -7.43 16
3 C 0.16 2.36 12.74 180.11 2.30 4.66 16
4 N -0.35 -9.21 12.21 -59.99 -0.73 -9.94 16
5 N -0.34 -9.89 12.21 -50.15 -0.61 -10.50 16
6 C 0.18 3.63 7.54 137.98 1.04 4.67 16
7 C 0.15 2.61 6.03 85.56 0.52 3.12 16
8 N -0.66 -12.05 6.25 -517.93 -3.24 -15.28 16
9 C 0.06 1.27 5.07 86.30 0.44 1.70 16
10 C 0.14 2.96 3.12 45.34 0.14 3.10 16
11 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
12 C -0.10 -1.14 6.29 31.87 0.20 -0.94 16
13 C -0.13 -1.32 7.09 32.07 0.23 -1.10 16
14 C 0.09 1.48 6.74 86.86 0.59 2.07 16
15 N -0.61 -16.14 3.06 -788.06 -2.41 -18.55 16
16 C 0.55 20.78 7.68 87.66 0.67 21.45 16
17 O -0.56 -26.65 14.66 -3.03 -0.04 -26.69 16
18 C -0.12 -4.83 5.09 71.24 0.36 -4.47 16
19 S -0.15 -8.61 20.57 -56.49 -1.16 -9.78 16
20 C -0.55 -31.29 9.50 67.95 0.65 -30.64 16
21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16
22 C 0.01 0.69 5.49 84.86 0.47 1.16 16
23 N -0.91 -56.53 13.22 21.65 0.29 -56.24 16
24 Si 1.00 43.57 29.55 68.60 2.03 45.60 16
25 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16
26 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16
27 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16
28 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16
29 H 0.10 0.03 7.20 -2.39 -0.02 0.01 16
30 H 0.12 -0.46 8.14 -2.39 -0.02 -0.48 16
31 H 0.26 0.84 8.06 -2.91 -0.02 0.81 16
32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16
33 H 0.12 1.34 7.22 -2.39 -0.02 1.33 16
34 H 0.34 7.54 8.78 -89.70 -0.79 6.76 16
35 H 0.01 0.46 6.57 -2.39 -0.02 0.45 16
36 H 0.09 1.67 8.03 -2.39 -0.02 1.65 16
37 H 0.10 0.84 7.78 -2.39 -0.02 0.83 16
38 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16
39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16
41 H 0.08 1.36 7.47 -2.39 -0.02 1.35 16
42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16
43 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16
44 H 0.10 3.86 7.95 -2.40 -0.02 3.84 16
45 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16
Total: -1.00 -89.80 388.09 1.63 -88.18
By element:
Atomic # 1 Polarization: 14.12 SS G_CDS: 0.22 Total: 14.33 kcal
Atomic # 6 Polarization: -2.69 SS G_CDS: 9.00 Total: 6.31 kcal
Atomic # 7 Polarization: -109.53 SS G_CDS: -8.42 Total: -117.94 kcal
Atomic # 8 Polarization: -26.65 SS G_CDS: -0.04 Total: -26.69 kcal
Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal
Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.78 kcal
Total: -89.80 1.63 -88.18 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270007538.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.142 kcal
(2) G-P(sol) polarization free energy of solvation -89.802 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.177 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.965 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds