Wall clock time and date at job start Tue Mar 31 2020 22:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35630 * 125.67470 * 2 1 4 4 C 1.35520 * 108.85170 * 179.89106 * 3 2 1 5 5 Cl 1.73599 * 126.07711 * 180.12144 * 4 3 2 6 6 C 1.39890 * 107.84948 * 0.37609 * 4 3 2 7 7 C 1.37637 * 125.67543 * 180.31276 * 2 1 3 8 8 C 1.46662 * 126.22285 * 359.93967 * 7 2 1 9 9 O 1.21705 * 119.99795 * 172.57582 * 8 7 2 10 10 N 1.34776 * 120.00187 * 352.57702 * 8 7 2 11 11 C 1.46504 * 119.99741 * 184.09801 * 10 8 7 12 12 H 1.08998 * 109.47511 * 7.15447 * 11 10 8 13 13 C 1.53002 * 109.47081 * 127.15861 * 11 10 8 14 14 N 1.46498 * 109.47092 * 305.00180 * 13 11 10 15 15 C 1.36938 * 119.99871 * 180.02562 * 14 13 11 16 16 H 1.07996 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99712 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00473 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99772 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47166 * 90.00070 * 19 17 15 21 21 H 1.48502 * 109.46851 * 209.99804 * 19 17 15 22 22 H 1.48493 * 109.47102 * 329.99709 * 19 17 15 23 23 C 1.52998 * 109.46846 * 247.15759 * 11 10 8 24 24 C 1.54265 * 110.03327 * 177.67337 * 23 11 10 25 25 C 1.54966 * 104.16442 * 217.13702 * 24 23 11 26 26 C 1.54887 * 102.77242 * 37.88419 * 25 24 23 27 27 C 1.53870 * 110.03532 * 60.45679 * 23 11 10 28 28 H 1.09004 * 109.46462 * 262.31138 * 1 2 3 29 29 H 1.08991 * 109.46965 * 22.31078 * 1 2 3 30 30 H 1.08996 * 109.46840 * 142.31347 * 1 2 3 31 31 H 1.08002 * 125.57286 * 0.04031 * 3 2 1 32 32 H 1.08002 * 126.45343 * 179.73938 * 6 4 3 33 33 H 0.96989 * 120.00170 * 4.09718 * 10 8 7 34 34 H 1.09002 * 109.46792 * 64.99640 * 13 11 10 35 35 H 1.08996 * 109.47043 * 184.99852 * 13 11 10 36 36 H 0.97000 * 120.00038 * 359.97438 * 14 13 11 37 37 H 0.96999 * 120.00216 * 180.02562 * 18 17 15 38 38 H 1.09002 * 110.01701 * 299.06208 * 23 11 10 39 39 H 1.09005 * 110.48883 * 335.78625 * 24 23 11 40 40 H 1.08999 * 110.48805 * 98.42399 * 24 23 11 41 41 H 1.09002 * 110.71818 * 279.57244 * 25 24 23 42 42 H 1.08992 * 110.76832 * 156.22127 * 25 24 23 43 43 H 1.08999 * 110.48550 * 203.40575 * 26 25 24 44 44 H 1.09000 * 110.60044 * 80.82580 * 26 25 24 45 45 H 1.09003 * 110.03192 * 238.56832 * 27 23 11 46 46 H 1.09003 * 110.03382 * 359.95055 * 27 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1018 0.0000 4 6 3.5532 0.7096 0.0024 5 17 4.9378 1.7567 0.0064 6 6 3.5783 -0.6891 -0.0047 7 6 2.2677 -1.1181 -0.0061 8 6 1.8121 -2.5121 -0.0125 9 8 2.6163 -3.4145 -0.1537 10 7 0.5027 -2.7938 0.1381 11 6 0.0582 -4.1872 0.2218 12 1 0.9270 -4.8434 0.2719 13 6 -0.7962 -4.3754 1.4770 14 7 -0.0424 -3.9311 2.6520 15 6 -0.6080 -4.0058 3.8968 16 1 -1.6100 -4.3919 4.0123 17 6 0.1065 -3.5853 5.0102 18 7 1.3278 -3.1153 4.8695 19 14 -0.6654 -3.6866 6.7083 20 1 -0.3544 -5.0056 7.3155 21 1 -0.1177 -2.6053 7.5662 22 1 -2.1375 -3.5294 6.5930 23 6 -0.7714 -4.5331 -1.0163 24 6 -1.1976 -6.0150 -0.9699 25 6 -1.1158 -6.4796 -2.4460 26 6 0.1419 -5.7415 -2.9681 27 6 0.0795 -4.3590 -2.2865 28 1 -0.3632 -0.1375 1.0185 29 1 -0.3633 0.9507 -0.3901 30 1 -0.3633 -0.8132 -0.6282 31 1 1.9088 2.1245 0.0006 32 1 4.4584 -1.3151 -0.0089 33 1 -0.1453 -2.0740 0.1910 34 1 -1.7089 -3.7864 1.3869 35 1 -1.0530 -5.4290 1.5871 36 1 0.8577 -3.5847 2.5482 37 1 1.8272 -2.8218 5.6475 38 1 -1.6521 -3.8927 -1.0662 39 1 -0.5098 -6.5905 -0.3503 40 1 -2.2173 -6.1071 -0.5960 41 1 -2.0030 -6.1688 -2.9978 42 1 -0.9819 -7.5597 -2.5043 43 1 0.0990 -5.6347 -4.0520 44 1 1.0476 -6.2716 -2.6735 45 1 -0.3886 -3.6348 -2.9532 46 1 1.0833 -4.0273 -2.0209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270415613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:44 Heat of formation + Delta-G solvation = -7.250541 kcal Electronic energy + Delta-G solvation = -28147.398714 eV Core-core repulsion = 24290.883686 eV Total energy + Delta-G solvation = -3856.515028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.58722 -40.80488 -38.99133 -37.38802 -36.93719 -35.48017 -33.88718 -32.97367 -31.43797 -30.05202 -29.44388 -27.78049 -27.62284 -25.37585 -24.05905 -22.43977 -21.68978 -21.57838 -21.23508 -20.43492 -19.25179 -18.80405 -17.44246 -17.05313 -16.84023 -16.64975 -16.28897 -16.10819 -15.54276 -15.31216 -15.10794 -14.96108 -14.92768 -14.56855 -14.18592 -13.98558 -13.93230 -13.83800 -13.64127 -13.17436 -13.00863 -12.84995 -12.54579 -12.45087 -12.27737 -12.14731 -11.93149 -11.89570 -11.84069 -11.80873 -11.65125 -11.44947 -11.42627 -11.16852 -10.94758 -10.10986 -9.70804 -9.24704 -9.01827 -7.94274 -5.24888 0.33403 1.12770 1.44056 1.45341 1.47777 1.55877 1.82529 2.14246 2.34477 2.54544 3.39188 3.50380 3.65148 3.72191 3.77623 3.81868 3.99460 4.13464 4.16858 4.22896 4.28984 4.36610 4.55396 4.58059 4.60303 4.68443 4.70755 4.73755 4.83245 4.84061 4.86561 4.90904 5.04656 5.10473 5.14846 5.28423 5.30653 5.36865 5.45892 5.48139 5.51850 5.56272 5.67247 6.03824 6.24627 6.47059 7.13574 7.31571 8.06997 8.29772 9.28509 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.006522 B = 0.004933 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4291.878002 B = 5674.431560 C = 9111.564180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.413 5.413 3 C 0.058 3.942 4 C -0.144 4.144 5 Cl -0.046 7.046 6 C -0.120 4.120 7 C -0.059 4.059 8 C 0.590 3.410 9 O -0.573 6.573 10 N -0.703 5.703 11 C 0.146 3.854 12 H 0.065 0.935 13 C 0.143 3.857 14 N -0.743 5.743 15 C -0.242 4.242 16 H 0.081 0.919 17 C -0.075 4.075 18 N -0.970 5.970 19 Si 0.973 3.027 20 H -0.291 1.291 21 H -0.298 1.298 22 H -0.263 1.263 23 C -0.087 4.087 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.125 4.125 27 C -0.117 4.117 28 H 0.084 0.916 29 H 0.143 0.857 30 H 0.097 0.903 31 H 0.221 0.779 32 H 0.139 0.861 33 H 0.405 0.595 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.370 0.630 37 H 0.248 0.752 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 7.401 -18.269 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.088 5.088 3 C -0.080 4.080 4 C -0.177 4.177 5 Cl -0.018 7.018 6 C -0.147 4.147 7 C -0.172 4.172 8 C 0.378 3.622 9 O -0.453 6.453 10 N -0.357 5.357 11 C 0.041 3.959 12 H 0.083 0.917 13 C 0.016 3.984 14 N -0.386 5.386 15 C -0.374 4.374 16 H 0.099 0.901 17 C -0.267 4.267 18 N -0.620 5.620 19 Si 0.802 3.198 20 H -0.219 1.219 21 H -0.225 1.225 22 H -0.188 1.188 23 C -0.107 4.107 24 C -0.158 4.158 25 C -0.152 4.152 26 C -0.162 4.162 27 C -0.155 4.155 28 H 0.103 0.897 29 H 0.161 0.839 30 H 0.115 0.885 31 H 0.237 0.763 32 H 0.157 0.843 33 H 0.247 0.753 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.201 0.799 37 H 0.057 0.943 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.935 6.748 -18.233 20.642 hybrid contribution 0.685 0.261 1.503 1.672 sum -6.250 7.009 -16.730 19.186 Atomic orbital electron populations 1.22771 0.73931 1.07822 1.04917 1.44115 1.07823 1.04349 1.52466 1.22298 0.87979 0.93368 1.04332 1.19969 0.89227 0.90491 1.17975 1.98304 1.40810 1.64870 1.97780 1.21194 0.95483 0.93955 1.04105 1.20231 0.91031 0.86944 1.19009 1.17154 0.82817 0.86571 0.75610 1.90793 1.54822 1.47351 1.52357 1.46156 1.07005 1.09583 1.72981 1.21358 0.97316 0.82250 0.94955 0.91677 1.21212 0.93985 0.97837 0.85349 1.42544 1.16784 1.76737 1.02523 1.19643 0.98640 1.33897 0.85228 0.90096 1.25583 0.96914 1.02511 1.01709 1.69871 1.12208 1.50337 1.29625 0.85154 0.78219 0.76570 0.79881 1.21862 1.22534 1.18761 1.22062 0.97941 0.98323 0.92380 1.22441 1.01716 0.93908 0.97692 1.22475 0.97947 0.99994 0.94774 1.22346 0.98223 0.95372 1.00283 1.22150 0.99158 0.98210 0.95987 0.89710 0.83852 0.88515 0.76259 0.84339 0.75301 0.94237 0.94622 0.79890 0.94283 0.88669 0.93051 0.90001 0.89786 0.91064 0.90461 0.93412 0.90533 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 9.51 127.77 1.22 1.89 16 2 N -0.41 -9.85 3.16 -534.17 -1.69 -11.54 16 3 C 0.06 1.24 11.35 83.48 0.95 2.19 16 4 C -0.14 -3.95 6.66 22.04 0.15 -3.81 16 5 Cl -0.05 -1.13 29.30 -2.72 -0.08 -1.21 16 6 C -0.12 -4.07 10.65 22.59 0.24 -3.83 16 7 C -0.06 -1.98 6.88 40.35 0.28 -1.70 16 8 C 0.59 22.23 6.99 86.44 0.60 22.84 16 9 O -0.57 -26.16 15.59 -4.36 -0.07 -26.22 16 10 N -0.70 -22.24 3.78 -446.50 -1.69 -23.93 16 11 C 0.15 4.80 1.73 44.99 0.08 4.88 16 12 H 0.06 2.66 6.94 -2.39 -0.02 2.65 16 13 C 0.14 5.40 5.66 86.38 0.49 5.89 16 14 N -0.74 -37.63 5.43 -343.46 -1.87 -39.49 16 15 C -0.24 -13.34 9.99 84.03 0.84 -12.50 16 16 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 17 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 18 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 19 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 C -0.09 -2.06 2.69 -10.07 -0.03 -2.08 16 24 C -0.12 -2.62 5.40 31.70 0.17 -2.45 16 25 C -0.11 -2.05 6.91 31.91 0.22 -1.83 16 26 C -0.12 -2.59 6.83 31.67 0.22 -2.38 16 27 C -0.12 -2.74 6.20 31.32 0.19 -2.54 16 28 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 29 H 0.14 0.87 8.11 -2.39 -0.02 0.85 16 30 H 0.10 1.31 6.05 -2.39 -0.01 1.30 16 31 H 0.22 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.14 4.95 8.06 -2.91 -0.02 4.92 16 33 H 0.41 10.49 4.53 -92.72 -0.42 10.07 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.35 7.41 -2.39 -0.02 1.34 16 36 H 0.37 21.00 7.33 -92.71 -0.68 20.32 16 37 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.35 7.73 -2.38 -0.02 1.33 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.04 1.23 6.02 -2.39 -0.01 1.22 16 Total: -1.00 -77.03 383.74 2.90 -74.12 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.10 Total: 40.17 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.08 Total: 0.72 kcal Atomic # 7 Polarization: -130.78 SS G_CDS: -4.96 Total: -135.74 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.07 Total: -26.22 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -77.03 2.90 -74.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.872 kcal (2) G-P(sol) polarization free energy of solvation -77.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds