Wall clock time and date at job start Tue Mar 31 2020 23:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48497 * 109.46864 * 239.99959 * 3 2 1 5 5 H 1.48502 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47172 * 120.00050 * 3 2 1 7 7 C 1.38813 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99605 * 182.36506 * 7 2 1 9 9 N 1.36930 * 120.00136 * 2.36817 * 7 2 1 10 10 C 1.46929 * 120.63055 * 143.78134 * 9 7 2 11 11 C 1.53195 * 108.77243 * 126.41045 * 10 9 7 12 12 C 1.53039 * 109.31391 * 54.63856 * 11 10 9 13 13 C 1.53037 * 109.53679 * 298.63110 * 12 11 10 14 14 C 1.53000 * 109.52578 * 181.33164 * 13 12 11 15 15 O 1.42898 * 109.47106 * 174.20218 * 14 13 12 16 16 N 1.46499 * 109.49900 * 301.41646 * 13 12 11 17 17 C 1.34778 * 119.99636 * 303.35561 * 16 13 12 18 18 O 1.21285 * 120.00312 * 354.87523 * 17 16 13 19 19 C 1.50702 * 119.99908 * 174.87303 * 17 16 13 20 20 C 1.53245 * 109.62010 * 60.92528 * 19 17 16 21 21 C 1.50592 * 109.15123 * 175.35478 * 20 19 17 22 22 O 1.21231 * 119.35548 * 150.88339 * 21 20 19 23 23 N 1.34134 * 121.27948 * 330.89067 * 21 20 19 24 24 C 1.34145 * 122.59113 * 0.53897 * 23 21 20 25 25 O 1.21228 * 119.35760 * 179.46170 * 24 23 21 26 26 C 1.50580 * 121.27664 * 359.48182 * 24 23 21 27 27 C 1.46925 * 120.63002 * 323.79988 * 9 7 2 28 28 H 0.96990 * 120.00481 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58778 * 246.19699 * 10 9 7 30 30 H 1.09001 * 109.58473 * 6.48150 * 10 9 7 31 31 H 1.09001 * 109.49697 * 174.58543 * 11 10 9 32 32 H 1.08997 * 109.50121 * 294.68494 * 11 10 9 33 33 H 1.09000 * 109.46296 * 178.60884 * 12 11 10 34 34 H 1.08998 * 109.46285 * 58.65007 * 12 11 10 35 35 H 1.09000 * 109.47189 * 294.20314 * 14 13 12 36 36 H 1.09002 * 109.46680 * 54.20431 * 14 13 12 37 37 H 0.96701 * 114.00253 * 180.02562 * 15 14 13 38 38 H 0.97001 * 120.00307 * 123.35921 * 16 13 12 39 39 H 1.09005 * 109.76961 * 300.46334 * 19 17 16 40 40 H 1.09000 * 109.52029 * 295.23931 * 20 19 17 41 41 H 1.08991 * 109.52330 * 55.43210 * 20 19 17 42 42 H 0.97006 * 118.70575 * 180.52455 * 23 21 20 43 43 H 1.08997 * 109.52592 * 269.16832 * 26 24 23 44 44 H 1.08999 * 109.57381 * 149.00601 * 26 24 23 45 45 H 1.09010 * 109.58593 * 113.80521 * 27 9 7 46 46 H 1.08992 * 109.70555 * 353.45280 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0895 -1.2025 0.0391 9 7 1.3265 -2.3875 -0.0479 10 6 1.8624 -3.5307 -0.7995 11 6 1.9200 -4.7478 0.1290 12 6 0.5355 -4.9877 0.7355 13 6 0.1208 -3.7687 1.5625 14 6 -1.2487 -4.0222 2.1957 15 8 -1.5745 -2.9431 3.0741 16 7 1.1108 -3.5329 2.6163 17 6 1.4014 -4.5095 3.4985 18 8 0.7783 -5.5499 3.4786 19 6 2.5007 -4.3089 4.5096 20 6 2.1616 -3.1148 5.4082 21 6 3.2078 -2.9938 6.4846 22 8 3.4592 -1.9025 6.9490 23 7 3.8669 -4.0699 6.9394 24 6 3.6482 -5.3052 6.4645 25 8 4.2846 -6.2352 6.9115 26 6 2.6277 -5.5591 5.3867 27 6 0.0428 -2.5403 0.6503 28 1 -0.4850 0.8399 0.0004 29 1 1.2122 -3.7480 -1.6469 30 1 2.8641 -3.2946 -1.1586 31 1 2.2247 -5.6258 -0.4406 32 1 2.6396 -4.5632 0.9266 33 1 0.5679 -5.8681 1.3774 34 1 -0.1883 -5.1477 -0.0636 35 1 -2.0035 -4.0938 1.4126 36 1 -1.2210 -4.9544 2.7600 37 1 -2.4315 -3.0374 3.5120 38 1 1.5570 -2.6739 2.6792 39 1 3.4446 -4.1244 3.9964 40 1 2.1460 -2.2028 4.8116 41 1 1.1843 -3.2690 5.8654 42 1 4.5280 -3.9501 7.6391 43 1 1.6636 -5.7831 5.8432 44 1 2.9456 -6.4029 4.7743 45 1 -0.7558 -2.6769 -0.0789 46 1 -0.1576 -1.6523 1.2495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271986943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:44 Heat of formation + Delta-G solvation = -138.187562 kcal Electronic energy + Delta-G solvation = -31894.045478 eV Core-core repulsion = 27591.143430 eV Total energy + Delta-G solvation = -4302.902048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75477 -40.08580 -39.02370 -37.73684 -35.94853 -35.54747 -33.98867 -33.81790 -32.56140 -30.34085 -29.84503 -28.95762 -25.51477 -25.21444 -25.10820 -23.40169 -22.28323 -21.06536 -20.14285 -19.54817 -18.78541 -17.99847 -17.43890 -17.25252 -16.82258 -16.78882 -16.00428 -15.55518 -15.25830 -14.84260 -14.76845 -14.55238 -14.40318 -14.21590 -14.04411 -13.75900 -13.40261 -13.13702 -13.06324 -12.60811 -12.42680 -12.35342 -11.97447 -11.69081 -11.52648 -11.47379 -11.23601 -10.98598 -10.89560 -10.85003 -10.55917 -10.49569 -10.43177 -10.27381 -10.01727 -9.95095 -9.68044 -9.65981 -9.06213 -8.57277 -8.49140 -6.64964 -5.88868 -3.43867 1.25841 2.48926 2.53723 2.79472 3.32107 3.38518 3.39410 3.41446 3.74005 4.19930 4.35796 4.39566 4.50139 4.61656 4.74699 5.05796 5.14083 5.28703 5.34038 5.35983 5.53859 5.55940 5.63398 5.63906 5.70057 5.77912 5.78940 5.90083 6.05655 6.24346 6.32686 6.42833 6.45467 6.57431 6.58325 6.76528 6.91346 6.98949 7.09947 7.23857 7.56945 7.66503 7.70136 7.98048 8.03650 8.42079 8.54276 9.13408 9.71643 10.32553 11.17061 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.004414 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.581949 B = 6341.604173 C = 7491.606888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.016 3.984 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.142 3.858 11 C -0.128 4.128 12 C -0.122 4.122 13 C 0.154 3.846 14 C 0.071 3.929 15 O -0.559 6.559 16 N -0.677 5.677 17 C 0.522 3.478 18 O -0.549 6.549 19 C -0.115 4.115 20 C -0.135 4.135 21 C 0.530 3.470 22 O -0.497 6.497 23 N -0.677 5.677 24 C 0.529 3.471 25 O -0.504 6.504 26 C -0.120 4.120 27 C 0.172 3.828 28 H 0.257 0.743 29 H 0.017 0.983 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.368 0.632 38 H 0.409 0.591 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.411 0.589 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.029 0.971 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 -9.415 8.563 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.184 4.184 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.167 4.167 12 C -0.160 4.160 13 C 0.066 3.934 14 C -0.009 4.009 15 O -0.363 6.363 16 N -0.326 5.326 17 C 0.306 3.694 18 O -0.428 6.428 19 C -0.137 4.137 20 C -0.175 4.175 21 C 0.318 3.682 22 O -0.369 6.369 23 N -0.342 5.342 24 C 0.318 3.682 25 O -0.377 6.377 26 C -0.160 4.160 27 C 0.046 3.954 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.213 0.787 38 H 0.245 0.755 39 H 0.129 0.871 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.250 0.750 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.047 0.953 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.837 -9.676 8.577 12.958 hybrid contribution 0.359 1.143 0.375 1.256 sum 1.196 -8.533 8.952 12.425 Atomic orbital electron populations 1.69859 1.05307 1.25872 1.53029 1.25340 0.95483 0.98299 0.99315 0.86408 0.78990 0.83344 0.78188 1.20887 1.21565 1.20806 1.19045 0.90360 0.82928 1.46985 0.91932 1.43957 1.22361 1.09458 1.55549 1.20995 0.97479 0.87623 0.92352 1.21919 0.96357 0.98731 0.99699 1.21743 0.97778 0.97714 0.98770 1.21338 0.85006 0.99571 0.87454 1.22573 0.96111 0.89622 0.92564 1.86558 1.40773 1.46458 1.62486 1.45842 1.41686 1.15964 1.29070 1.19853 0.83640 0.84269 0.81592 1.90619 1.52031 1.27795 1.72399 1.21535 1.01146 0.94721 0.96285 1.21974 0.98738 1.01239 0.95549 1.20888 0.81339 0.83159 0.82772 1.90817 1.63236 1.25815 1.57048 1.44915 1.40681 1.09006 1.39647 1.21034 0.83025 0.81434 0.82741 1.90789 1.46913 1.41767 1.58229 1.21747 0.99598 0.99603 0.95031 1.21170 0.87489 0.94189 0.92562 0.93260 0.96511 0.92873 0.93171 0.92641 0.90960 0.92011 0.93842 0.92537 0.78745 0.75503 0.87055 0.85648 0.86240 0.74960 0.86118 0.86053 0.95317 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.03 10.75 55.49 0.60 -23.44 16 2 C 0.02 0.40 5.29 -17.43 -0.09 0.31 16 3 Si 0.90 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.26 -6.51 9.54 -15.06 -0.14 -6.65 16 8 H 0.06 1.53 7.83 -52.49 -0.41 1.12 16 9 N -0.59 -13.17 2.91 -172.32 -0.50 -13.67 16 10 C 0.14 2.74 6.52 -3.71 -0.02 2.71 16 11 C -0.13 -2.08 5.93 -26.61 -0.16 -2.24 16 12 C -0.12 -1.97 4.42 -26.69 -0.12 -2.09 16 13 C 0.15 2.62 0.45 -131.70 -0.06 2.56 16 14 C 0.07 1.09 5.68 37.16 0.21 1.31 16 15 O -0.56 -8.57 13.08 -35.23 -0.46 -9.04 16 16 N -0.68 -10.38 3.88 -47.49 -0.18 -10.56 16 17 C 0.52 6.97 6.45 -10.98 -0.07 6.90 16 18 O -0.55 -8.36 12.27 5.55 0.07 -8.29 16 19 C -0.12 -1.15 2.67 -91.52 -0.24 -1.39 16 20 C -0.14 -1.30 5.23 -27.81 -0.15 -1.44 16 21 C 0.53 5.65 7.74 -11.33 -0.09 5.56 16 22 O -0.50 -7.05 17.88 5.60 0.10 -6.95 16 23 N -0.68 -6.38 5.09 -11.75 -0.06 -6.44 16 24 C 0.53 5.40 7.74 -11.33 -0.09 5.31 16 25 O -0.50 -6.72 17.88 5.60 0.10 -6.62 16 26 C -0.12 -1.11 4.70 -27.82 -0.13 -1.24 16 27 C 0.17 3.67 3.79 -3.71 -0.01 3.65 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.92 7.42 -51.93 -0.39 0.53 16 33 H 0.07 1.17 6.15 -51.93 -0.32 0.85 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 37 H 0.37 3.93 9.12 45.56 0.42 4.35 16 38 H 0.41 6.66 7.93 -40.82 -0.32 6.33 16 39 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.13 1.29 7.66 -51.93 -0.40 0.89 16 41 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.41 3.51 8.79 -40.82 -0.36 3.15 16 43 H 0.12 1.06 7.98 -51.93 -0.41 0.64 16 44 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 46 H 0.11 2.74 5.92 -51.93 -0.31 2.43 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -31.23 367.37 -6.76 -37.99 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.76 Total: 12.86 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: -1.16 Total: 13.26 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.15 Total: -54.11 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.19 Total: -30.90 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.23 -6.76 -37.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271986943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.196 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds