Wall clock time and date at job start Tue Mar 31 2020 23:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48497 * 109.46864 * 239.99959 * 3 2 1 5 5 H 1.48502 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47172 * 120.00050 * 3 2 1 7 7 C 1.38813 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99605 * 182.36506 * 7 2 1 9 9 N 1.36930 * 120.00136 * 2.36817 * 7 2 1 10 10 C 1.46929 * 120.63055 * 143.78134 * 9 7 2 11 11 C 1.53195 * 108.77243 * 126.41045 * 10 9 7 12 12 C 1.53039 * 109.31391 * 54.63856 * 11 10 9 13 13 C 1.53037 * 109.53679 * 298.63110 * 12 11 10 14 14 C 1.53000 * 109.52578 * 181.33164 * 13 12 11 15 15 O 1.42898 * 109.47106 * 174.20218 * 14 13 12 16 16 N 1.46499 * 109.49900 * 301.41646 * 13 12 11 17 17 C 1.34778 * 119.99636 * 303.35561 * 16 13 12 18 18 O 1.21285 * 120.00312 * 354.87523 * 17 16 13 19 19 C 1.50702 * 119.99908 * 174.87303 * 17 16 13 20 20 C 1.53245 * 109.62010 * 60.92528 * 19 17 16 21 21 C 1.50592 * 109.15123 * 175.35478 * 20 19 17 22 22 O 1.21231 * 119.35548 * 150.88339 * 21 20 19 23 23 N 1.34134 * 121.27948 * 330.89067 * 21 20 19 24 24 C 1.34145 * 122.59113 * 0.53897 * 23 21 20 25 25 O 1.21228 * 119.35760 * 179.46170 * 24 23 21 26 26 C 1.50580 * 121.27664 * 359.48182 * 24 23 21 27 27 C 1.46925 * 120.63002 * 323.79988 * 9 7 2 28 28 H 0.96990 * 120.00481 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58778 * 246.19699 * 10 9 7 30 30 H 1.09001 * 109.58473 * 6.48150 * 10 9 7 31 31 H 1.09001 * 109.49697 * 174.58543 * 11 10 9 32 32 H 1.08997 * 109.50121 * 294.68494 * 11 10 9 33 33 H 1.09000 * 109.46296 * 178.60884 * 12 11 10 34 34 H 1.08998 * 109.46285 * 58.65007 * 12 11 10 35 35 H 1.09000 * 109.47189 * 294.20314 * 14 13 12 36 36 H 1.09002 * 109.46680 * 54.20431 * 14 13 12 37 37 H 0.96701 * 114.00253 * 180.02562 * 15 14 13 38 38 H 0.97001 * 120.00307 * 123.35921 * 16 13 12 39 39 H 1.09005 * 109.76961 * 300.46334 * 19 17 16 40 40 H 1.09000 * 109.52029 * 295.23931 * 20 19 17 41 41 H 1.08991 * 109.52330 * 55.43210 * 20 19 17 42 42 H 0.97006 * 118.70575 * 180.52455 * 23 21 20 43 43 H 1.08997 * 109.52592 * 269.16832 * 26 24 23 44 44 H 1.08999 * 109.57381 * 149.00601 * 26 24 23 45 45 H 1.09010 * 109.58593 * 113.80521 * 27 9 7 46 46 H 1.08992 * 109.70555 * 353.45280 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0895 -1.2025 0.0391 9 7 1.3265 -2.3875 -0.0479 10 6 1.8624 -3.5307 -0.7995 11 6 1.9200 -4.7478 0.1290 12 6 0.5355 -4.9877 0.7355 13 6 0.1208 -3.7687 1.5625 14 6 -1.2487 -4.0222 2.1957 15 8 -1.5745 -2.9431 3.0741 16 7 1.1108 -3.5329 2.6163 17 6 1.4014 -4.5095 3.4985 18 8 0.7783 -5.5499 3.4786 19 6 2.5007 -4.3089 4.5096 20 6 2.1616 -3.1148 5.4082 21 6 3.2078 -2.9938 6.4846 22 8 3.4592 -1.9025 6.9490 23 7 3.8669 -4.0699 6.9394 24 6 3.6482 -5.3052 6.4645 25 8 4.2846 -6.2352 6.9115 26 6 2.6277 -5.5591 5.3867 27 6 0.0428 -2.5403 0.6503 28 1 -0.4850 0.8399 0.0004 29 1 1.2122 -3.7480 -1.6469 30 1 2.8641 -3.2946 -1.1586 31 1 2.2247 -5.6258 -0.4406 32 1 2.6396 -4.5632 0.9266 33 1 0.5679 -5.8681 1.3774 34 1 -0.1883 -5.1477 -0.0636 35 1 -2.0035 -4.0938 1.4126 36 1 -1.2210 -4.9544 2.7600 37 1 -2.4315 -3.0374 3.5120 38 1 1.5570 -2.6739 2.6792 39 1 3.4446 -4.1244 3.9964 40 1 2.1460 -2.2028 4.8116 41 1 1.1843 -3.2690 5.8654 42 1 4.5280 -3.9501 7.6391 43 1 1.6636 -5.7831 5.8432 44 1 2.9456 -6.4029 4.7743 45 1 -0.7558 -2.6769 -0.0789 46 1 -0.1576 -1.6523 1.2495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271986943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:43 Heat of formation + Delta-G solvation = -163.418786 kcal Electronic energy + Delta-G solvation = -31895.139586 eV Core-core repulsion = 27591.143430 eV Total energy + Delta-G solvation = -4303.996156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.65620 -41.29522 -39.97183 -39.04290 -37.27323 -36.51973 -35.33164 -34.89866 -34.05037 -31.90489 -31.30544 -29.81766 -27.27707 -26.53752 -26.16062 -24.26298 -23.89542 -22.39125 -21.45802 -20.36502 -20.06238 -18.92871 -18.75242 -18.37512 -18.09976 -18.01799 -17.08722 -16.83406 -16.33880 -16.29652 -15.79172 -15.70565 -15.51159 -15.45428 -15.34926 -14.96036 -14.72760 -14.50713 -14.37074 -13.99486 -13.83253 -13.47811 -13.39252 -12.98896 -12.78922 -12.67909 -12.51360 -12.45700 -12.29568 -12.22819 -11.93740 -11.92029 -11.60485 -11.41942 -11.41048 -11.36882 -11.14744 -10.93007 -10.48476 -10.29431 -9.72692 -8.47936 -7.80710 -5.37141 0.38315 1.51887 1.53838 1.58709 1.62534 1.69809 1.74848 2.31538 2.53812 2.89594 3.34848 3.36607 3.43285 3.48228 3.61842 3.74946 3.94868 4.05682 4.18816 4.31631 4.34760 4.40509 4.46287 4.56685 4.57768 4.72444 4.78330 4.87242 4.90866 4.93042 4.98793 5.02937 5.06967 5.20145 5.28386 5.40315 5.55392 5.70796 5.73354 5.82342 5.89640 6.25311 6.51905 6.73162 6.81886 7.02756 7.24067 7.38491 7.90059 8.45950 9.22268 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.004414 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.581949 B = 6341.604173 C = 7491.606888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.032 4.032 3 Si 0.957 3.043 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.604 5.604 10 C 0.139 3.861 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.159 3.841 14 C 0.077 3.923 15 O -0.576 6.576 16 N -0.682 5.682 17 C 0.528 3.472 18 O -0.562 6.562 19 C -0.103 4.103 20 C -0.130 4.130 21 C 0.543 3.457 22 O -0.532 6.532 23 N -0.669 5.669 24 C 0.541 3.459 25 O -0.533 6.533 26 C -0.112 4.112 27 C 0.188 3.812 28 H 0.249 0.751 29 H 0.011 0.989 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.388 0.612 38 H 0.404 0.596 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.134 0.866 42 H 0.416 0.584 43 H 0.132 0.868 44 H 0.125 0.875 45 H -0.002 1.002 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 -10.752 9.294 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.229 4.229 3 Si 0.785 3.215 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.327 5.327 10 C 0.013 3.987 11 C -0.155 4.155 12 C -0.155 4.155 13 C 0.071 3.929 14 C -0.002 4.002 15 O -0.382 6.382 16 N -0.331 5.331 17 C 0.314 3.686 18 O -0.443 6.443 19 C -0.124 4.124 20 C -0.170 4.170 21 C 0.333 3.667 22 O -0.407 6.407 23 N -0.333 5.333 24 C 0.332 3.668 25 O -0.407 6.407 26 C -0.152 4.152 27 C 0.061 3.939 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.236 0.764 38 H 0.239 0.761 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.152 0.848 42 H 0.256 0.744 43 H 0.150 0.850 44 H 0.143 0.857 45 H 0.016 0.984 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.612 -11.052 9.323 14.548 hybrid contribution 0.106 1.522 0.127 1.531 sum 1.718 -9.529 9.450 13.530 Atomic orbital electron populations 1.70040 1.06434 1.25681 1.54877 1.25916 0.96032 1.00851 1.00084 0.85527 0.77668 0.80071 0.78194 1.20841 1.22600 1.20063 1.19301 0.90651 0.83852 1.45310 0.91677 1.44145 1.22387 1.09739 1.56436 1.21104 0.97029 0.87849 0.92681 1.21795 0.96501 0.98002 0.99210 1.21706 0.97702 0.97325 0.98727 1.21052 0.86663 0.97598 0.87564 1.22465 0.95235 0.89810 0.92699 1.86514 1.42482 1.46606 1.62636 1.45796 1.41607 1.16308 1.29342 1.20189 0.83767 0.83347 0.81318 1.90617 1.52680 1.28190 1.72768 1.21432 1.00253 0.95177 0.95543 1.21943 0.99069 1.00835 0.95108 1.20938 0.80872 0.82625 0.82302 1.90816 1.64369 1.27158 1.58353 1.44816 1.40416 1.08602 1.39481 1.21086 0.82431 0.80969 0.82332 1.90793 1.48055 1.42591 1.59298 1.21719 0.99752 0.99151 0.94544 1.20774 0.86245 0.94850 0.91985 0.94148 0.97140 0.92851 0.90690 0.92541 0.90182 0.91964 0.93722 0.91783 0.76427 0.76095 0.85826 0.86162 0.84784 0.74370 0.85022 0.85692 0.98355 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.80 10.75 21.65 0.23 -50.57 16 2 C -0.03 -1.65 5.29 84.86 0.45 -1.20 16 3 Si 0.96 42.20 29.55 68.60 2.03 44.23 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.26 -12.86 9.54 84.03 0.80 -12.06 16 8 H 0.07 3.14 7.83 -2.91 -0.02 3.11 16 9 N -0.60 -26.93 2.91 -699.09 -2.03 -28.96 16 10 C 0.14 5.23 6.52 86.36 0.56 5.79 16 11 C -0.12 -3.52 5.93 30.67 0.18 -3.34 16 12 C -0.12 -3.54 4.42 30.62 0.14 -3.41 16 13 C 0.16 5.28 0.45 3.68 0.00 5.28 16 14 C 0.08 2.31 5.68 71.98 0.41 2.71 16 15 O -0.58 -17.13 13.08 -148.98 -1.95 -19.08 16 16 N -0.68 -19.94 3.88 -422.56 -1.64 -21.58 16 17 C 0.53 12.81 6.45 87.66 0.56 13.38 16 18 O -0.56 -15.53 12.27 -3.04 -0.04 -15.56 16 19 C -0.10 -1.77 2.67 -11.38 -0.03 -1.80 16 20 C -0.13 -2.22 5.23 29.90 0.16 -2.06 16 21 C 0.54 10.61 7.74 87.72 0.68 11.29 16 22 O -0.53 -14.53 17.88 -2.88 -0.05 -14.58 16 23 N -0.67 -11.31 5.09 -428.63 -2.18 -13.49 16 24 C 0.54 9.82 7.74 87.72 0.68 10.50 16 25 O -0.53 -13.20 17.88 -2.87 -0.05 -13.25 16 26 C -0.11 -1.76 4.70 29.89 0.14 -1.62 16 27 C 0.19 8.10 3.79 86.36 0.33 8.43 16 28 H 0.25 13.55 8.31 -92.72 -0.77 12.78 16 29 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.72 7.42 -2.39 -0.02 1.70 16 33 H 0.08 2.37 6.15 -2.39 -0.01 2.36 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.84 6.43 -2.39 -0.02 1.82 16 37 H 0.39 7.77 9.12 -74.06 -0.68 7.10 16 38 H 0.40 12.79 7.93 -92.71 -0.74 12.06 16 39 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.12 2.29 7.66 -2.39 -0.02 2.27 16 41 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.42 6.45 8.79 -92.70 -0.81 5.64 16 43 H 0.13 1.87 7.98 -2.39 -0.02 1.85 16 44 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.00 -0.08 8.14 -2.38 -0.02 -0.09 16 46 H 0.08 3.97 5.92 -2.39 -0.01 3.96 16 Total: -1.00 -66.86 367.37 -1.80 -68.66 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -1.17 Total: 32.29 kcal Atomic # 6 Polarization: 26.84 SS G_CDS: 5.06 Total: 31.90 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -5.62 Total: -114.60 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -2.09 Total: -62.48 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -66.86 -1.80 -68.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271986943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.757 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds