Wall clock time and date at job start Tue Mar 31 2020 23:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00230 * 2 1 4 4 H 1.48496 * 109.46888 * 270.00430 * 3 2 1 5 5 H 1.48497 * 109.47166 * 30.00214 * 3 2 1 6 6 H 1.48497 * 109.47126 * 150.00491 * 3 2 1 7 7 C 1.38810 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99801 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47023 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.43073 * 52.45606 * 11 10 9 13 13 C 1.54884 * 110.48818 * 289.77925 * 11 10 9 14 14 C 1.54890 * 102.74967 * 203.38054 * 13 11 10 15 15 C 1.54263 * 104.19711 * 37.93670 * 14 13 11 16 16 C 1.53875 * 106.59698 * 336.39551 * 15 14 13 17 17 H 1.08999 * 110.06896 * 240.68877 * 16 15 14 18 18 N 1.46499 * 110.03080 * 119.28477 * 16 15 14 19 19 C 1.34777 * 120.00199 * 87.83396 * 18 16 15 20 20 O 1.21553 * 119.99924 * 359.97438 * 19 18 16 21 21 C 1.47837 * 119.99981 * 180.27506 * 19 18 16 22 22 C 1.40025 * 120.56158 * 359.44307 * 21 19 18 23 23 C 1.38358 * 118.29033 * 179.73888 * 22 21 19 24 24 C 1.38348 * 119.30387 * 0.53892 * 23 22 21 25 25 N 1.31925 * 121.07548 * 359.71848 * 24 23 22 26 26 C 1.31696 * 121.88487 * 0.02562 * 25 24 23 27 27 C 1.50698 * 119.71539 * 180.02562 * 26 25 24 28 28 F 1.39901 * 109.47072 * 119.98303 * 27 26 25 29 29 F 1.39908 * 109.47002 * 239.97687 * 27 26 25 30 30 H 0.96996 * 120.00017 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00178 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46999 * 60.00207 * 10 9 7 33 33 H 1.08995 * 109.47566 * 299.99853 * 10 9 7 34 34 H 1.09005 * 110.75817 * 321.69144 * 13 11 10 35 35 H 1.09005 * 110.76076 * 84.87623 * 13 11 10 36 36 H 1.09001 * 110.49215 * 156.62041 * 14 13 11 37 37 H 1.09008 * 110.48223 * 279.12716 * 14 13 11 38 38 H 1.08999 * 110.03398 * 217.10965 * 15 14 13 39 39 H 1.09000 * 110.02713 * 95.67573 * 15 14 13 40 40 H 0.97001 * 120.00074 * 267.82499 * 18 16 15 41 41 H 1.08004 * 120.85412 * 0.02562 * 22 21 19 42 42 H 1.08001 * 120.34441 * 180.26364 * 23 22 21 43 43 H 1.07996 * 119.46285 * 179.74730 * 24 23 22 44 44 H 1.08996 * 109.47335 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 1 0.3424 -4.7043 -0.8098 13 6 0.3399 -4.9130 1.3653 14 6 -0.1107 -6.3942 1.4130 15 6 1.0602 -7.1667 0.7710 16 6 1.8069 -6.1656 -0.1279 17 1 1.7881 -6.5062 -1.1631 18 7 3.1918 -6.0190 0.3268 19 6 4.1445 -6.8531 -0.1349 20 8 3.8546 -7.7272 -0.9282 21 6 5.5409 -6.7090 0.3286 22 6 5.8890 -5.7029 1.2382 23 6 7.2085 -5.6143 1.6446 24 6 8.1352 -6.5066 1.1358 25 7 7.7793 -7.4414 0.2756 26 6 6.5354 -7.5694 -0.1375 27 6 6.1829 -8.6554 -1.1210 28 9 5.2310 -9.5085 -0.5524 29 9 5.6581 -8.0798 -2.2832 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 0.0002 32 1 2.6854 -3.7150 0.8879 33 1 2.6840 -3.7142 -0.8921 34 1 1.0267 -4.6918 2.1824 35 1 -0.5199 -4.2436 1.3935 36 1 -0.2595 -6.7148 2.4441 37 1 -1.0246 -6.5337 0.8355 38 1 0.6783 -7.9935 0.1721 39 1 1.7282 -7.5434 1.5456 40 1 3.4232 -5.3216 0.9601 41 1 5.1456 -5.0167 1.6163 42 1 7.5128 -4.8536 2.3484 43 1 9.1667 -6.4372 1.4482 44 1 7.0784 -9.2247 -1.3701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272282082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:50 Heat of formation + Delta-G solvation = -85.504064 kcal Electronic energy + Delta-G solvation = -30158.587454 eV Core-core repulsion = 25746.882418 eV Total energy + Delta-G solvation = -4411.705036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.81413 -46.79226 -41.00008 -39.68993 -37.87347 -34.46503 -34.03287 -32.84409 -32.34515 -31.47550 -28.65278 -27.98249 -26.78478 -24.91639 -24.50991 -22.73867 -22.35860 -21.24762 -20.35005 -19.31568 -18.45275 -17.72215 -17.59525 -17.11175 -17.01717 -16.45313 -15.69173 -15.48018 -15.26671 -14.88488 -14.85052 -14.67357 -14.13589 -13.92404 -13.66641 -13.53655 -13.41631 -13.32818 -13.10148 -13.06779 -12.88613 -12.35396 -12.32545 -11.58910 -11.44170 -11.28801 -10.91967 -10.90326 -10.82901 -10.53657 -10.41812 -10.39804 -10.37293 -10.27437 -10.04106 -9.80844 -9.74276 -9.68274 -8.98519 -8.93283 -6.98808 -5.82386 -3.11439 0.16258 0.62320 2.66474 3.01858 3.15746 3.38882 3.40562 3.43772 3.45678 3.99733 4.15220 4.28237 4.35587 4.49849 4.57065 4.69366 4.79608 4.81993 4.94669 5.03012 5.03505 5.07905 5.42849 5.44925 5.49205 5.57640 5.60967 5.65631 5.74825 5.82381 5.89482 5.99090 6.04350 6.06536 6.17461 6.25609 6.44090 6.49673 6.59018 6.69475 6.75523 7.25812 7.45893 7.62729 8.13648 8.36220 9.47737 10.04868 10.39717 11.40334 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.003441 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.716101 B = 8136.111969 C = 9685.197419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.165 3.835 11 C -0.108 4.108 12 H 0.090 0.910 13 C -0.113 4.113 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.150 3.850 17 H 0.092 0.908 18 N -0.708 5.708 19 C 0.551 3.449 20 O -0.510 6.510 21 C -0.144 4.144 22 C -0.044 4.044 23 C -0.156 4.156 24 C 0.119 3.881 25 N -0.464 5.464 26 C 0.099 3.901 27 C 0.338 3.662 28 F -0.183 7.183 29 F -0.181 7.181 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.011 0.989 33 H 0.020 0.980 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.402 0.598 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.170 0.830 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.302 -17.004 4.855 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.037 3.963 11 C -0.127 4.127 12 H 0.108 0.892 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.045 3.955 17 H 0.110 0.890 18 N -0.362 5.362 19 C 0.335 3.665 20 O -0.386 6.386 21 C -0.150 4.150 22 C -0.070 4.070 23 C -0.175 4.175 24 C -0.039 4.039 25 N -0.173 5.173 26 C -0.042 4.042 27 C 0.284 3.716 28 F -0.164 7.164 29 F -0.162 7.162 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.029 0.971 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.240 0.760 41 H 0.166 0.834 42 H 0.168 0.832 43 H 0.187 0.813 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.795 -18.089 3.946 22.505 hybrid contribution -0.385 2.109 0.714 2.260 sum 12.410 -15.980 4.660 20.762 Atomic orbital electron populations 1.69652 1.05109 1.25724 1.57484 1.24730 0.95501 0.97666 1.02846 0.86211 0.78611 0.83888 0.77579 1.21678 1.21724 1.20811 1.19189 0.90939 0.84178 1.43051 0.91328 1.42335 1.05901 0.99762 1.89325 1.20567 0.93074 0.85497 0.97173 1.22493 0.98107 0.93152 0.98939 0.89202 1.22508 1.00558 0.95379 0.96575 1.22388 0.97809 0.95790 1.00306 1.22561 0.97376 0.97991 0.98969 1.21673 0.79214 0.95565 0.99053 0.88951 1.46108 1.08490 1.34512 1.47061 1.17940 0.84298 0.82455 0.81766 1.90876 1.81919 1.32821 1.33019 1.20921 0.95630 0.98272 1.00155 1.21938 0.97394 0.94839 0.92816 1.22302 0.93483 1.00652 1.01093 1.22996 1.00569 0.89248 0.91044 1.67333 1.17232 1.21227 1.11465 1.21873 0.89295 0.96149 0.96842 1.19783 0.88315 0.84849 0.78689 1.93043 1.67684 1.70465 1.85203 1.93062 1.88612 1.85699 1.48842 0.93448 0.78132 0.97143 0.96204 0.91578 0.90729 0.91920 0.91560 0.91266 0.91583 0.76046 0.83398 0.83159 0.81318 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.73 -17.63 5.49 -59.90 -0.33 -17.96 16 10 C 0.16 3.09 4.73 -4.03 -0.02 3.07 16 11 C -0.11 -1.65 2.84 -88.97 -0.25 -1.90 16 12 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 13 C -0.11 -1.59 6.19 -24.74 -0.15 -1.74 16 14 C -0.13 -1.47 6.83 -25.07 -0.17 -1.64 16 15 C -0.13 -1.60 6.59 -25.61 -0.17 -1.77 16 16 C 0.15 2.07 3.12 -66.82 -0.21 1.86 16 17 H 0.09 1.40 7.56 -51.93 -0.39 1.01 16 18 N -0.71 -9.33 4.30 -53.67 -0.23 -9.57 16 19 C 0.55 7.94 7.58 -12.33 -0.09 7.85 16 20 O -0.51 -8.71 10.99 5.32 0.06 -8.65 16 21 C -0.14 -1.79 5.85 -104.82 -0.61 -2.41 16 22 C -0.04 -0.42 9.65 -38.87 -0.37 -0.79 16 23 C -0.16 -1.16 10.10 -39.50 -0.40 -1.56 16 24 C 0.12 0.93 11.17 -17.47 -0.20 0.74 16 25 N -0.46 -4.96 10.24 -9.15 -0.09 -5.05 16 26 C 0.10 1.22 6.31 -82.17 -0.52 0.70 16 27 C 0.34 4.26 5.02 36.00 0.18 4.44 16 28 F -0.18 -2.65 15.03 2.25 0.03 -2.62 16 29 F -0.18 -2.75 15.03 2.25 0.03 -2.72 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.38 9.83 7.64 -40.82 -0.31 9.52 16 32 H 0.01 0.19 6.41 -51.93 -0.33 -0.14 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.94 7.97 -51.93 -0.41 0.53 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 40 H 0.40 4.79 4.67 -40.82 -0.19 4.60 16 41 H 0.15 1.19 6.52 -52.48 -0.34 0.85 16 42 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.12 1.10 8.11 -51.93 -0.42 0.68 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -33.39 364.38 -8.31 -41.70 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.74 Total: 9.60 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -3.23 Total: -0.28 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.07 Total: -59.39 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.06 Total: -8.65 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.07 Total: -5.33 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.39 -8.31 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272282082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.804 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds