Wall clock time and date at job start Tue Mar 31 2020 23:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00230 * 2 1 4 4 H 1.48496 * 109.46888 * 270.00430 * 3 2 1 5 5 H 1.48497 * 109.47166 * 30.00214 * 3 2 1 6 6 H 1.48497 * 109.47126 * 150.00491 * 3 2 1 7 7 C 1.38810 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99801 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47023 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.43073 * 52.45606 * 11 10 9 13 13 C 1.54884 * 110.48818 * 289.77925 * 11 10 9 14 14 C 1.54890 * 102.74967 * 203.38054 * 13 11 10 15 15 C 1.54263 * 104.19711 * 37.93670 * 14 13 11 16 16 C 1.53875 * 106.59698 * 336.39551 * 15 14 13 17 17 H 1.08999 * 110.06896 * 240.68877 * 16 15 14 18 18 N 1.46499 * 110.03080 * 119.28477 * 16 15 14 19 19 C 1.34777 * 120.00199 * 87.83396 * 18 16 15 20 20 O 1.21553 * 119.99924 * 359.97438 * 19 18 16 21 21 C 1.47837 * 119.99981 * 180.27506 * 19 18 16 22 22 C 1.40025 * 120.56158 * 359.44307 * 21 19 18 23 23 C 1.38358 * 118.29033 * 179.73888 * 22 21 19 24 24 C 1.38348 * 119.30387 * 0.53892 * 23 22 21 25 25 N 1.31925 * 121.07548 * 359.71848 * 24 23 22 26 26 C 1.31696 * 121.88487 * 0.02562 * 25 24 23 27 27 C 1.50698 * 119.71539 * 180.02562 * 26 25 24 28 28 F 1.39901 * 109.47072 * 119.98303 * 27 26 25 29 29 F 1.39908 * 109.47002 * 239.97687 * 27 26 25 30 30 H 0.96996 * 120.00017 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00178 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46999 * 60.00207 * 10 9 7 33 33 H 1.08995 * 109.47566 * 299.99853 * 10 9 7 34 34 H 1.09005 * 110.75817 * 321.69144 * 13 11 10 35 35 H 1.09005 * 110.76076 * 84.87623 * 13 11 10 36 36 H 1.09001 * 110.49215 * 156.62041 * 14 13 11 37 37 H 1.09008 * 110.48223 * 279.12716 * 14 13 11 38 38 H 1.08999 * 110.03398 * 217.10965 * 15 14 13 39 39 H 1.09000 * 110.02713 * 95.67573 * 15 14 13 40 40 H 0.97001 * 120.00074 * 267.82499 * 18 16 15 41 41 H 1.08004 * 120.85412 * 0.02562 * 22 21 19 42 42 H 1.08001 * 120.34441 * 180.26364 * 23 22 21 43 43 H 1.07996 * 119.46285 * 179.74730 * 24 23 22 44 44 H 1.08996 * 109.47335 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 1 0.3424 -4.7043 -0.8098 13 6 0.3399 -4.9130 1.3653 14 6 -0.1107 -6.3942 1.4130 15 6 1.0602 -7.1667 0.7710 16 6 1.8069 -6.1656 -0.1279 17 1 1.7881 -6.5062 -1.1631 18 7 3.1918 -6.0190 0.3268 19 6 4.1445 -6.8531 -0.1349 20 8 3.8546 -7.7272 -0.9282 21 6 5.5409 -6.7090 0.3286 22 6 5.8890 -5.7029 1.2382 23 6 7.2085 -5.6143 1.6446 24 6 8.1352 -6.5066 1.1358 25 7 7.7793 -7.4414 0.2756 26 6 6.5354 -7.5694 -0.1375 27 6 6.1829 -8.6554 -1.1210 28 9 5.2310 -9.5085 -0.5524 29 9 5.6581 -8.0798 -2.2832 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 0.0002 32 1 2.6854 -3.7150 0.8879 33 1 2.6840 -3.7142 -0.8921 34 1 1.0267 -4.6918 2.1824 35 1 -0.5199 -4.2436 1.3935 36 1 -0.2595 -6.7148 2.4441 37 1 -1.0246 -6.5337 0.8355 38 1 0.6783 -7.9935 0.1721 39 1 1.7282 -7.5434 1.5456 40 1 3.4232 -5.3216 0.9601 41 1 5.1456 -5.0167 1.6163 42 1 7.5128 -4.8536 2.3484 43 1 9.1667 -6.4372 1.4482 44 1 7.0784 -9.2247 -1.3701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272282082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:49 Heat of formation + Delta-G solvation = -107.032048 kcal Electronic energy + Delta-G solvation = -30159.520977 eV Core-core repulsion = 25746.882418 eV Total energy + Delta-G solvation = -4412.638559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.84224 -47.84730 -41.88412 -40.69702 -39.04474 -36.26868 -35.04853 -33.67587 -33.32753 -33.14735 -30.22265 -29.02206 -27.69852 -26.35349 -25.61019 -24.11592 -23.51795 -22.24911 -21.43680 -20.58723 -19.54398 -19.02281 -18.55568 -18.34337 -18.13858 -17.49930 -16.74487 -16.60044 -16.35168 -16.19285 -15.95974 -15.85536 -15.36341 -15.17508 -14.94130 -14.74844 -14.62244 -14.49965 -14.23239 -14.16302 -14.10392 -13.57968 -13.24760 -13.13844 -12.83156 -12.69283 -12.36703 -12.26512 -12.17532 -11.99150 -11.82993 -11.67127 -11.57024 -11.47765 -11.21494 -11.15833 -10.91604 -10.72214 -10.45231 -10.08559 -8.99714 -7.94342 -5.23124 -0.62583 -0.09021 1.48041 1.49870 1.57680 1.73767 1.98305 2.34803 2.56106 2.57578 3.21649 3.28811 3.36319 3.41392 3.55649 3.66541 3.68083 3.82097 3.88406 4.06379 4.09903 4.16964 4.24066 4.32227 4.37105 4.48511 4.53776 4.56500 4.66101 4.75730 4.77575 4.83184 4.93411 5.00935 5.09408 5.21428 5.24029 5.35098 5.37482 5.45741 5.51132 5.52567 6.27162 6.37606 6.56176 7.07168 7.34558 8.09528 8.33138 9.29157 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.003441 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.716101 B = 8136.111969 C = 9685.197419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.970 3.030 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.167 3.833 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.122 4.122 16 C 0.156 3.844 17 H 0.075 0.925 18 N -0.703 5.703 19 C 0.547 3.453 20 O -0.544 6.544 21 C -0.169 4.169 22 C -0.049 4.049 23 C -0.142 4.142 24 C 0.122 3.878 25 N -0.476 5.476 26 C 0.082 3.918 27 C 0.328 3.672 28 F -0.198 7.198 29 F -0.201 7.201 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.031 0.969 33 H 0.008 0.992 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.408 0.592 41 H 0.161 0.839 42 H 0.189 0.811 43 H 0.210 0.790 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.577 -16.855 6.683 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.384 5.384 10 C 0.041 3.959 11 C -0.120 4.120 12 H 0.096 0.904 13 C -0.146 4.146 14 C -0.151 4.151 15 C -0.161 4.161 16 C 0.050 3.950 17 H 0.093 0.907 18 N -0.356 5.356 19 C 0.333 3.667 20 O -0.423 6.423 21 C -0.175 4.175 22 C -0.075 4.075 23 C -0.161 4.161 24 C -0.035 4.035 25 N -0.185 5.185 26 C -0.058 4.058 27 C 0.274 3.726 28 F -0.179 7.179 29 F -0.183 7.183 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.049 0.951 33 H 0.026 0.974 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.247 0.753 41 H 0.178 0.822 42 H 0.206 0.794 43 H 0.226 0.774 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 15.104 -17.963 5.789 24.173 hybrid contribution -0.978 2.039 0.163 2.267 sum 14.126 -15.924 5.952 22.103 Atomic orbital electron populations 1.69807 1.06620 1.26041 1.59418 1.25523 0.96312 1.00977 1.03663 0.85193 0.77946 0.79686 0.77260 1.21899 1.22268 1.18984 1.19613 0.91509 0.85261 1.41248 0.90534 1.42534 1.05672 1.00937 1.89240 1.20679 0.93519 0.84566 0.97174 1.22360 0.97401 0.92607 0.99583 0.90379 1.22446 0.99804 0.96840 0.95548 1.22325 0.97646 0.93629 1.01528 1.22487 0.97363 0.97550 0.98677 1.21534 0.79770 0.94876 0.98772 0.90666 1.46017 1.08085 1.34558 1.46950 1.18332 0.85322 0.81867 0.81149 1.90852 1.82639 1.34239 1.34563 1.20838 0.94324 1.00179 1.02147 1.22188 0.98977 0.94170 0.92153 1.22747 0.92132 1.00697 1.00490 1.23771 1.02490 0.87853 0.89355 1.67378 1.16200 1.22474 1.12457 1.21791 0.90120 0.96395 0.97460 1.20254 0.88583 0.85442 0.78327 1.92996 1.68540 1.70980 1.85427 1.93007 1.89033 1.86128 1.50103 0.94042 0.79308 0.95107 0.97431 0.91331 0.92344 0.90062 0.90918 0.90948 0.91197 0.75294 0.82193 0.79370 0.77363 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.01 13.06 21.65 0.28 -57.73 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 8 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -36.02 5.49 -343.43 -1.89 -37.90 16 10 C 0.17 6.22 4.73 86.38 0.41 6.63 16 11 C -0.10 -3.08 2.84 -9.72 -0.03 -3.10 16 12 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 13 C -0.11 -2.99 6.19 31.88 0.20 -2.79 16 14 C -0.11 -2.49 6.83 31.67 0.22 -2.27 16 15 C -0.12 -2.87 6.59 31.32 0.21 -2.66 16 16 C 0.16 4.29 3.12 45.71 0.14 4.44 16 17 H 0.08 2.36 7.56 -2.39 -0.02 2.34 16 18 N -0.70 -18.27 4.30 -441.99 -1.90 -20.17 16 19 C 0.55 15.91 7.58 86.78 0.66 16.57 16 20 O -0.54 -19.22 10.99 -3.88 -0.04 -19.26 16 21 C -0.17 -4.09 5.85 -19.99 -0.12 -4.20 16 22 C -0.05 -0.82 9.65 22.73 0.22 -0.60 16 23 C -0.14 -1.55 10.10 22.32 0.23 -1.32 16 24 C 0.12 1.47 11.17 84.70 0.95 2.42 16 25 N -0.48 -9.22 10.24 -182.85 -1.87 -11.09 16 26 C 0.08 1.97 6.31 42.89 0.27 2.24 16 27 C 0.33 8.37 5.02 71.24 0.36 8.73 16 28 F -0.20 -5.92 15.03 44.97 0.68 -5.24 16 29 F -0.20 -6.36 15.03 44.97 0.68 -5.68 16 30 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.37 19.53 7.64 -92.71 -0.71 18.83 16 32 H 0.03 1.05 6.41 -2.38 -0.02 1.03 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.07 1.85 7.97 -2.38 -0.02 1.83 16 35 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.61 7.92 -2.39 -0.02 1.59 16 40 H 0.41 9.27 4.67 -92.71 -0.43 8.84 16 41 H 0.16 2.18 6.52 -2.91 -0.02 2.16 16 42 H 0.19 0.63 8.06 -2.91 -0.02 0.60 16 43 H 0.21 0.74 8.06 -2.91 -0.02 0.71 16 44 H 0.15 2.73 8.11 -2.39 -0.02 2.71 16 Total: -1.00 -73.75 364.38 2.89 -70.87 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.09 Total: 31.22 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.01 Total: 8.20 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -5.38 Total: -126.89 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.04 Total: -19.26 kcal Atomic # 9 Polarization: -12.28 SS G_CDS: 1.35 Total: -10.92 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -73.75 2.89 -70.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272282082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.165 kcal (2) G-P(sol) polarization free energy of solvation -73.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds