Wall clock time and date at job start Tue Mar 31 2020 23:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48504 * 109.47059 * 239.99424 * 3 2 1 5 5 H 1.48496 * 109.47429 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47284 * 120.00185 * 3 2 1 7 7 C 1.38816 * 119.99424 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99218 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00051 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47399 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.54166 * 307.61446 * 11 10 9 13 13 C 1.54889 * 110.48831 * 70.22559 * 11 10 9 14 14 C 1.54878 * 102.75294 * 156.62049 * 13 11 10 15 15 C 1.54266 * 104.19583 * 322.05882 * 14 13 11 16 16 C 1.53872 * 106.59819 * 23.60957 * 15 14 13 17 17 H 1.09004 * 110.03345 * 119.33080 * 16 15 14 18 18 N 1.46501 * 110.03369 * 240.71338 * 16 15 14 19 19 C 1.34772 * 120.00328 * 273.55011 * 18 16 15 20 20 O 1.21550 * 119.99612 * 359.97438 * 19 18 16 21 21 C 1.47835 * 120.00168 * 179.97438 * 19 18 16 22 22 C 1.40020 * 120.55892 * 359.97438 * 21 19 18 23 23 C 1.38359 * 118.28918 * 180.02562 * 22 21 19 24 24 C 1.38349 * 119.30361 * 0.02562 * 23 22 21 25 25 N 1.31933 * 121.07917 * 359.71618 * 24 23 22 26 26 C 1.31690 * 121.87577 * 0.57642 * 25 24 23 27 27 C 1.50703 * 119.71514 * 179.70482 * 26 25 24 28 28 F 1.39904 * 109.46969 * 239.72600 * 27 26 25 29 29 F 1.39901 * 109.47086 * 119.73003 * 27 26 25 30 30 H 0.97001 * 119.99530 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00196 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47029 * 59.99748 * 10 9 7 33 33 H 1.09002 * 109.47009 * 300.00460 * 10 9 7 34 34 H 1.09007 * 110.75670 * 38.30115 * 13 11 10 35 35 H 1.09004 * 110.75659 * 274.94020 * 13 11 10 36 36 H 1.09001 * 110.49130 * 203.37615 * 14 13 11 37 37 H 1.09003 * 110.48553 * 80.73563 * 14 13 11 38 38 H 1.08995 * 110.03393 * 264.31946 * 15 14 13 39 39 H 1.09003 * 110.02959 * 142.89291 * 15 14 13 40 40 H 0.97006 * 119.99918 * 93.54194 * 18 16 15 41 41 H 1.08001 * 120.85706 * 0.04159 * 22 21 19 42 42 H 1.07998 * 120.35008 * 180.02562 * 23 22 21 43 43 H 1.07998 * 119.46291 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47152 * 359.72671 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.3412 -4.7058 0.8082 13 6 0.3388 -4.9125 -1.3658 14 6 -0.1119 -6.3935 -1.4138 15 6 1.0595 -7.1663 -0.7730 16 6 1.8068 -6.1657 0.1258 17 1 1.7888 -6.5076 1.1607 18 7 3.1915 -6.0189 -0.3297 19 6 4.1392 -6.8706 0.1093 20 8 3.8453 -7.7602 0.8836 21 6 5.5364 -6.7228 -0.3509 22 6 5.8878 -5.7025 -1.2431 23 6 7.2089 -5.6078 -1.6434 24 6 8.1313 -6.5156 -1.1545 25 7 7.7722 -7.4639 -0.3105 26 6 6.5267 -7.5984 0.0954 27 6 6.1691 -8.7036 1.0556 28 9 5.2132 -9.5399 0.4689 29 9 5.6471 -8.1505 2.2298 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6845 -3.7146 0.8905 33 1 2.6846 -3.7146 -0.8894 34 1 1.0250 -4.6908 -2.1832 35 1 -0.5230 -4.2454 -1.3918 36 1 -0.2615 -6.7136 -2.4449 37 1 -1.0241 -6.5337 -0.8337 38 1 1.7269 -7.5428 -1.5481 39 1 0.6779 -7.9934 -0.1742 40 1 3.4261 -5.3087 -0.9475 41 1 5.1469 -5.0073 -1.6093 42 1 7.5168 -4.8333 -2.3303 43 1 9.1632 -6.4437 -1.4649 44 1 7.0620 -9.2824 1.2922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272282084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:57 Heat of formation + Delta-G solvation = -85.294049 kcal Electronic energy + Delta-G solvation = -30156.464117 eV Core-core repulsion = 25744.768189 eV Total energy + Delta-G solvation = -4411.695929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.81522 -46.79350 -41.00060 -39.69171 -37.87322 -34.46419 -34.03467 -32.84485 -32.34432 -31.47612 -28.65389 -27.98083 -26.78410 -24.91521 -24.51111 -22.73855 -22.36400 -21.24922 -20.33940 -19.30917 -18.45437 -17.72231 -17.59552 -17.11272 -17.01678 -16.45414 -15.69818 -15.47989 -15.26419 -14.88274 -14.85082 -14.67556 -14.14021 -13.91980 -13.66650 -13.53612 -13.41984 -13.32932 -13.09947 -13.06879 -12.88541 -12.35421 -12.32537 -11.58636 -11.44231 -11.28756 -10.90518 -10.89568 -10.83014 -10.53995 -10.41796 -10.40076 -10.38246 -10.27676 -10.05751 -9.80786 -9.73941 -9.68270 -8.98523 -8.92912 -6.98986 -5.82270 -3.11384 0.16254 0.62312 2.66479 3.01965 3.15711 3.38996 3.40591 3.43873 3.44994 3.99694 4.15167 4.28256 4.35643 4.49858 4.57106 4.69304 4.79641 4.82009 4.94681 5.03202 5.03466 5.07985 5.42848 5.44946 5.49031 5.57676 5.61068 5.65681 5.75075 5.82621 5.89405 5.99093 6.04645 6.06431 6.17437 6.25678 6.44036 6.49400 6.59120 6.69243 6.75240 7.25776 7.46005 7.62171 8.13714 8.36339 9.47738 10.04834 10.39708 11.40363 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.003432 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.622268 B = 8155.934077 C = 9717.072270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.068 0.932 9 N -0.729 5.729 10 C 0.165 3.835 11 C -0.107 4.107 12 H 0.090 0.910 13 C -0.113 4.113 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.150 3.850 17 H 0.092 0.908 18 N -0.709 5.709 19 C 0.551 3.449 20 O -0.510 6.510 21 C -0.144 4.144 22 C -0.044 4.044 23 C -0.156 4.156 24 C 0.118 3.882 25 N -0.464 5.464 26 C 0.099 3.901 27 C 0.338 3.662 28 F -0.183 7.183 29 F -0.181 7.181 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.020 0.980 33 H 0.011 0.989 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.170 0.830 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.276 -16.935 -4.816 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.373 5.373 10 C 0.037 3.963 11 C -0.127 4.127 12 H 0.108 0.892 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.045 3.955 17 H 0.110 0.890 18 N -0.362 5.362 19 C 0.335 3.665 20 O -0.386 6.386 21 C -0.150 4.150 22 C -0.070 4.070 23 C -0.175 4.175 24 C -0.039 4.039 25 N -0.172 5.172 26 C -0.042 4.042 27 C 0.284 3.716 28 F -0.164 7.164 29 F -0.162 7.162 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.240 0.760 41 H 0.166 0.834 42 H 0.168 0.832 43 H 0.187 0.813 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.756 -18.031 -3.919 22.432 hybrid contribution -0.369 2.116 -0.704 2.261 sum 12.387 -15.915 -4.623 20.690 Atomic orbital electron populations 1.69647 1.05110 1.25846 1.57380 1.24732 0.95504 0.97667 1.02814 0.86283 0.78565 0.83585 0.77823 1.21287 1.21623 1.21256 1.19145 0.90908 0.84186 1.43204 0.91378 1.42322 1.05897 0.99743 1.89334 1.20564 0.93087 0.85515 0.97163 1.22490 0.98089 0.93125 0.98963 0.89191 1.22512 1.00530 0.95392 0.96586 1.22393 0.97815 0.95800 1.00304 1.22563 0.97373 0.97988 0.98971 1.21671 0.79231 0.95579 0.98987 0.89024 1.46125 1.08693 1.32945 1.48443 1.17938 0.84300 0.82640 0.81599 1.90875 1.81736 1.32328 1.33690 1.20922 0.95664 0.98072 1.00321 1.21938 0.97354 0.94954 0.92750 1.22302 0.93491 1.00630 1.01094 1.22999 1.00591 0.89161 0.91119 1.67337 1.17055 1.21568 1.11289 1.21873 0.89306 0.96085 0.96903 1.19784 0.88238 0.85266 0.78347 1.93043 1.67418 1.71481 1.84450 1.93060 1.88700 1.86598 1.47862 0.93394 0.78125 0.96194 0.97146 0.91557 0.90733 0.91905 0.91561 0.91594 0.91268 0.76020 0.83397 0.83155 0.81318 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.73 -17.61 5.49 -59.91 -0.33 -17.94 16 10 C 0.16 3.08 4.72 -4.04 -0.02 3.06 16 11 C -0.11 -1.65 2.85 -88.97 -0.25 -1.90 16 12 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 13 C -0.11 -1.59 6.19 -24.74 -0.15 -1.75 16 14 C -0.13 -1.48 6.83 -25.08 -0.17 -1.65 16 15 C -0.13 -1.60 6.59 -25.61 -0.17 -1.77 16 16 C 0.15 2.07 3.10 -66.81 -0.21 1.87 16 17 H 0.09 1.39 7.61 -51.93 -0.39 0.99 16 18 N -0.71 -9.35 4.33 -53.67 -0.23 -9.59 16 19 C 0.55 7.94 7.57 -12.34 -0.09 7.85 16 20 O -0.51 -8.70 11.01 5.32 0.06 -8.64 16 21 C -0.14 -1.79 5.85 -104.82 -0.61 -2.41 16 22 C -0.04 -0.42 9.65 -38.87 -0.37 -0.79 16 23 C -0.16 -1.16 10.10 -39.50 -0.40 -1.56 16 24 C 0.12 0.93 11.17 -17.47 -0.20 0.74 16 25 N -0.46 -4.96 10.24 -9.14 -0.09 -5.05 16 26 C 0.10 1.22 6.31 -82.17 -0.52 0.70 16 27 C 0.34 4.26 5.02 36.01 0.18 4.44 16 28 F -0.18 -2.65 15.03 2.25 0.03 -2.62 16 29 F -0.18 -2.75 15.03 2.25 0.03 -2.71 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.38 9.83 7.64 -40.82 -0.31 9.51 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.01 0.19 6.39 -51.93 -0.33 -0.14 16 34 H 0.07 0.94 7.97 -51.93 -0.41 0.53 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.40 4.81 4.61 -40.82 -0.19 4.62 16 41 H 0.15 1.19 6.52 -52.49 -0.34 0.85 16 42 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.12 1.10 8.11 -51.93 -0.42 0.68 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -33.33 364.36 -8.31 -41.64 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.74 Total: 9.69 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -3.23 Total: -0.31 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.07 Total: -59.37 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.06 Total: -8.64 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.07 Total: -5.33 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.33 -8.31 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272282084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.656 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds