Wall clock time and date at job start Tue Mar 31 2020 23:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48504 * 109.47059 * 239.99424 * 3 2 1 5 5 H 1.48496 * 109.47429 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47284 * 120.00185 * 3 2 1 7 7 C 1.38816 * 119.99424 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99218 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00051 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47399 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.54166 * 307.61446 * 11 10 9 13 13 C 1.54889 * 110.48831 * 70.22559 * 11 10 9 14 14 C 1.54878 * 102.75294 * 156.62049 * 13 11 10 15 15 C 1.54266 * 104.19583 * 322.05882 * 14 13 11 16 16 C 1.53872 * 106.59819 * 23.60957 * 15 14 13 17 17 H 1.09004 * 110.03345 * 119.33080 * 16 15 14 18 18 N 1.46501 * 110.03369 * 240.71338 * 16 15 14 19 19 C 1.34772 * 120.00328 * 273.55011 * 18 16 15 20 20 O 1.21550 * 119.99612 * 359.97438 * 19 18 16 21 21 C 1.47835 * 120.00168 * 179.97438 * 19 18 16 22 22 C 1.40020 * 120.55892 * 359.97438 * 21 19 18 23 23 C 1.38359 * 118.28918 * 180.02562 * 22 21 19 24 24 C 1.38349 * 119.30361 * 0.02562 * 23 22 21 25 25 N 1.31933 * 121.07917 * 359.71618 * 24 23 22 26 26 C 1.31690 * 121.87577 * 0.57642 * 25 24 23 27 27 C 1.50703 * 119.71514 * 179.70482 * 26 25 24 28 28 F 1.39904 * 109.46969 * 239.72600 * 27 26 25 29 29 F 1.39901 * 109.47086 * 119.73003 * 27 26 25 30 30 H 0.97001 * 119.99530 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00196 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47029 * 59.99748 * 10 9 7 33 33 H 1.09002 * 109.47009 * 300.00460 * 10 9 7 34 34 H 1.09007 * 110.75670 * 38.30115 * 13 11 10 35 35 H 1.09004 * 110.75659 * 274.94020 * 13 11 10 36 36 H 1.09001 * 110.49130 * 203.37615 * 14 13 11 37 37 H 1.09003 * 110.48553 * 80.73563 * 14 13 11 38 38 H 1.08995 * 110.03393 * 264.31946 * 15 14 13 39 39 H 1.09003 * 110.02959 * 142.89291 * 15 14 13 40 40 H 0.97006 * 119.99918 * 93.54194 * 18 16 15 41 41 H 1.08001 * 120.85706 * 0.04159 * 22 21 19 42 42 H 1.07998 * 120.35008 * 180.02562 * 23 22 21 43 43 H 1.07998 * 119.46291 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47152 * 359.72671 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.3412 -4.7058 0.8082 13 6 0.3388 -4.9125 -1.3658 14 6 -0.1119 -6.3935 -1.4138 15 6 1.0595 -7.1663 -0.7730 16 6 1.8068 -6.1657 0.1258 17 1 1.7888 -6.5076 1.1607 18 7 3.1915 -6.0189 -0.3297 19 6 4.1392 -6.8706 0.1093 20 8 3.8453 -7.7602 0.8836 21 6 5.5364 -6.7228 -0.3509 22 6 5.8878 -5.7025 -1.2431 23 6 7.2089 -5.6078 -1.6434 24 6 8.1313 -6.5156 -1.1545 25 7 7.7722 -7.4639 -0.3105 26 6 6.5267 -7.5984 0.0954 27 6 6.1691 -8.7036 1.0556 28 9 5.2132 -9.5399 0.4689 29 9 5.6471 -8.1505 2.2298 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6845 -3.7146 0.8905 33 1 2.6846 -3.7146 -0.8894 34 1 1.0250 -4.6908 -2.1832 35 1 -0.5230 -4.2454 -1.3918 36 1 -0.2615 -6.7136 -2.4449 37 1 -1.0241 -6.5337 -0.8337 38 1 1.7269 -7.5428 -1.5481 39 1 0.6779 -7.9934 -0.1742 40 1 3.4261 -5.3087 -0.9475 41 1 5.1469 -5.0073 -1.6093 42 1 7.5168 -4.8333 -2.3303 43 1 9.1632 -6.4437 -1.4649 44 1 7.0620 -9.2824 1.2922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272282084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:56 Heat of formation + Delta-G solvation = -106.764395 kcal Electronic energy + Delta-G solvation = -30157.395141 eV Core-core repulsion = 25744.768189 eV Total energy + Delta-G solvation = -4412.626953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.84238 -47.84745 -41.88553 -40.69940 -39.04515 -36.26588 -35.05065 -33.67736 -33.32687 -33.14692 -30.22367 -29.02203 -27.69818 -26.35146 -25.61055 -24.11840 -23.51910 -22.25185 -21.43045 -20.58050 -19.54457 -19.02154 -18.55534 -18.34349 -18.13861 -17.50167 -16.74209 -16.60702 -16.35368 -16.18887 -15.95828 -15.85835 -15.36800 -15.17160 -14.93681 -14.75148 -14.62281 -14.49860 -14.23314 -14.16361 -14.10405 -13.58123 -13.24754 -13.13196 -12.80420 -12.67807 -12.36812 -12.27633 -12.21932 -11.99010 -11.82793 -11.66894 -11.57290 -11.48146 -11.21617 -11.15917 -10.90180 -10.72249 -10.45270 -10.08674 -8.99549 -7.93999 -5.22815 -0.62619 -0.09098 1.48318 1.50961 1.57004 1.73701 1.98348 2.34786 2.56447 2.57533 3.21631 3.28751 3.36140 3.41463 3.55582 3.66326 3.68054 3.82056 3.88349 4.06414 4.09882 4.16931 4.24029 4.32148 4.37014 4.48385 4.53597 4.56364 4.65971 4.75693 4.77565 4.83099 4.93377 5.00790 5.09215 5.21237 5.23752 5.34785 5.37427 5.45676 5.51054 5.52477 6.27318 6.37540 6.56095 7.07098 7.34760 8.09776 8.33418 9.29285 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.003432 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.622268 B = 8155.934077 C = 9717.072270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.167 3.833 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.122 4.122 16 C 0.156 3.844 17 H 0.075 0.925 18 N -0.703 5.703 19 C 0.547 3.453 20 O -0.544 6.544 21 C -0.169 4.169 22 C -0.049 4.049 23 C -0.142 4.142 24 C 0.122 3.878 25 N -0.476 5.476 26 C 0.082 3.918 27 C 0.328 3.672 28 F -0.198 7.198 29 F -0.201 7.201 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.008 0.992 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.408 0.592 41 H 0.160 0.840 42 H 0.189 0.811 43 H 0.210 0.790 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.540 -16.748 -6.598 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.208 1.208 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.384 5.384 10 C 0.040 3.960 11 C -0.119 4.119 12 H 0.097 0.903 13 C -0.146 4.146 14 C -0.151 4.151 15 C -0.161 4.161 16 C 0.051 3.949 17 H 0.093 0.907 18 N -0.357 5.357 19 C 0.333 3.667 20 O -0.423 6.423 21 C -0.175 4.175 22 C -0.075 4.075 23 C -0.161 4.161 24 C -0.035 4.035 25 N -0.185 5.185 26 C -0.058 4.058 27 C 0.274 3.726 28 F -0.179 7.179 29 F -0.183 7.183 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.026 0.974 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.247 0.753 41 H 0.178 0.822 42 H 0.206 0.794 43 H 0.226 0.774 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 15.055 -17.867 -5.715 24.053 hybrid contribution -0.957 2.034 -0.169 2.254 sum 14.098 -15.833 -5.884 22.002 Atomic orbital electron populations 1.69807 1.06618 1.26117 1.59333 1.25529 0.96312 1.00990 1.03625 0.85257 0.77247 0.79316 0.78212 1.19914 1.22383 1.20779 1.19578 0.91505 0.85271 1.41415 0.90545 1.42520 1.05666 1.00919 1.89261 1.20676 0.93528 0.84573 0.97183 1.22356 0.97393 0.92574 0.99599 0.90330 1.22450 0.99780 0.96843 0.95572 1.22330 0.97649 0.93652 1.01512 1.22488 0.97362 0.97561 0.98669 1.21533 0.79783 0.94890 0.98713 0.90699 1.46033 1.08297 1.33002 1.48326 1.18328 0.85316 0.82057 0.80975 1.90851 1.82457 1.33722 1.35231 1.20839 0.94366 0.99957 1.02336 1.22185 0.98932 0.94275 0.92104 1.22746 0.92143 1.00770 1.00404 1.23773 1.02504 0.87791 0.89404 1.67382 1.16023 1.22830 1.12263 1.21793 0.90129 0.96290 0.97553 1.20255 0.88500 0.85920 0.77928 1.92997 1.68279 1.71983 1.84682 1.93005 1.89116 1.87008 1.49137 0.94037 0.79304 0.97378 0.95118 0.91340 0.92323 0.90073 0.90900 0.91277 0.90968 0.75291 0.82211 0.79373 0.77361 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.96 13.06 21.65 0.28 -57.68 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.25 -13.21 9.99 84.03 0.84 -12.37 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -35.98 5.49 -343.45 -1.89 -37.86 16 10 C 0.17 6.21 4.72 86.38 0.41 6.62 16 11 C -0.10 -3.07 2.85 -9.72 -0.03 -3.09 16 12 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 13 C -0.11 -3.00 6.19 31.88 0.20 -2.80 16 14 C -0.11 -2.50 6.83 31.67 0.22 -2.29 16 15 C -0.12 -2.89 6.59 31.32 0.21 -2.68 16 16 C 0.16 4.31 3.10 45.71 0.14 4.45 16 17 H 0.07 2.34 7.61 -2.39 -0.02 2.32 16 18 N -0.70 -18.33 4.33 -441.99 -1.91 -20.24 16 19 C 0.55 15.91 7.57 86.78 0.66 16.57 16 20 O -0.54 -19.18 11.01 -3.87 -0.04 -19.22 16 21 C -0.17 -4.09 5.85 -20.00 -0.12 -4.21 16 22 C -0.05 -0.83 9.65 22.73 0.22 -0.61 16 23 C -0.14 -1.55 10.10 22.32 0.23 -1.33 16 24 C 0.12 1.48 11.17 84.70 0.95 2.42 16 25 N -0.48 -9.21 10.24 -182.84 -1.87 -11.09 16 26 C 0.08 1.97 6.31 42.89 0.27 2.24 16 27 C 0.33 8.36 5.02 71.24 0.36 8.72 16 28 F -0.20 -5.91 15.03 44.97 0.68 -5.24 16 29 F -0.20 -6.34 15.03 44.97 0.68 -5.67 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.37 19.52 7.64 -92.71 -0.71 18.81 16 32 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.03 1.04 6.39 -2.39 -0.02 1.03 16 34 H 0.07 1.85 7.97 -2.38 -0.02 1.84 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.61 7.92 -2.39 -0.02 1.59 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.41 9.33 4.61 -92.70 -0.43 8.90 16 41 H 0.16 2.19 6.52 -2.91 -0.02 2.17 16 42 H 0.19 0.64 8.06 -2.91 -0.02 0.61 16 43 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 44 H 0.15 2.72 8.11 -2.39 -0.02 2.70 16 Total: -1.00 -73.56 364.36 2.87 -70.68 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.08 Total: 31.49 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.01 Total: 8.09 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -5.39 Total: -126.87 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.04 Total: -19.22 kcal Atomic # 9 Polarization: -12.26 SS G_CDS: 1.35 Total: -10.90 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -73.56 2.87 -70.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272282084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.081 kcal (2) G-P(sol) polarization free energy of solvation -73.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds