Wall clock time and date at job start Tue Mar 31 2020 23:17:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86798 * 119.99772 * 2 1
4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1
6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1
7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3
8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1
10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2
11 11 N 1.46499 * 109.46968 * 179.97438 * 10 9 7
12 12 C 1.46772 * 124.34711 * 90.00320 * 11 10 9
13 13 C 1.54250 * 105.46954 * 197.32401 * 12 11 10
14 14 F 1.39897 * 113.32686 * 95.94079 * 13 12 11
15 15 C 1.53703 * 109.53848 * 224.33671 * 13 12 11
16 16 N 1.47104 * 106.87876 * 80.91577 * 15 13 12
17 17 C 1.46899 * 110.99783 * 140.67954 * 16 15 13
18 18 C 1.50697 * 109.47513 * 308.16918 * 17 16 15
19 19 C 1.34850 * 125.89516 * 264.69751 * 18 17 16
20 20 C 1.40887 * 107.42062 * 179.88110 * 19 18 17
21 21 C 1.34853 * 107.41772 * 0.37472 * 20 19 18
22 22 N 1.36342 * 125.88865 * 84.99692 * 18 17 16
23 23 H 0.97006 * 125.64016 * 0.02562 * 22 18 17
24 24 C 1.46983 * 109.24582 * 17.95791 * 16 15 13
25 25 C 1.53735 * 108.14243 * 358.72099 * 24 16 15
26 26 F 1.39895 * 113.28281 * 107.77838 * 25 24 16
27 27 C 1.34387 * 124.34576 * 269.69833 * 11 10 9
28 28 O 1.21287 * 124.89450 * 0.12731 * 27 11 10
29 29 H 0.97001 * 119.99667 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.46894 * 300.00433 * 9 7 2
31 31 H 1.08998 * 109.47107 * 60.00164 * 9 7 2
32 32 H 1.08993 * 109.47110 * 300.00135 * 10 9 7
33 33 H 1.09006 * 109.46692 * 60.00091 * 10 9 7
34 34 H 1.09004 * 110.24061 * 316.32310 * 12 11 10
35 35 H 1.08998 * 110.24819 * 78.23563 * 12 11 10
36 36 H 1.08997 * 109.98058 * 200.27992 * 15 13 12
37 37 H 1.09007 * 109.97952 * 321.56485 * 15 13 12
38 38 H 1.08998 * 109.47196 * 68.17136 * 17 16 15
39 39 H 1.09002 * 109.47373 * 188.17158 * 17 16 15
40 40 H 1.08003 * 126.29088 * 0.02562 * 19 18 17
41 41 H 1.08004 * 126.29588 * 180.12135 * 20 19 18
42 42 H 1.07997 * 125.89144 * 179.80374 * 21 20 19
43 43 H 1.08997 * 109.73697 * 239.03941 * 24 16 15
44 44 H 1.09002 * 109.73851 * 118.40180 * 24 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8903 2.3965 1.2125
6 1 1.8903 2.3965 -1.2124
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 7 1.5129 -4.9308 0.0001
12 6 1.0985 -5.6483 -1.2114
13 6 0.0133 -6.6426 -0.7497
14 9 -1.2888 -6.1615 -0.9235
15 6 0.2624 -8.0133 -1.3989
16 7 1.3056 -8.6793 -0.6037
17 6 1.0188 -10.1122 -0.4537
18 6 -0.3875 -10.2924 0.0569
19 6 -0.7457 -10.4535 1.3469
20 6 -2.1481 -10.5833 1.3822
21 6 -2.5929 -10.5049 0.1115
22 7 -1.5167 -10.3264 -0.7064
23 1 -1.5492 -10.2386 -1.6720
24 6 1.4086 -8.0227 0.7073
25 6 0.4031 -6.8603 0.7408
26 9 -0.7015 -7.1081 1.5628
27 6 1.1392 -5.5900 1.1100
28 8 1.3578 -5.2192 2.2439
29 1 -0.4850 -0.8401 0.0004
30 1 0.6247 -2.5570 0.8897
31 1 0.6242 -2.5567 -0.8903
32 1 2.8720 -3.6043 -0.8904
33 1 2.8720 -3.6042 0.8895
34 1 0.6856 -4.9508 -1.9402
35 1 1.9450 -6.1843 -1.6405
36 1 -0.6529 -8.6049 -1.3828
37 1 0.6037 -7.8826 -2.4259
38 1 1.1206 -10.6062 -1.4200
39 1 1.7215 -10.5512 0.2545
40 1 -0.0800 -10.4763 2.1971
41 1 -2.7551 -10.7243 2.2643
42 1 -3.6237 -10.5715 -0.2037
43 1 2.4191 -7.6396 0.8487
44 1 1.1722 -8.7368 1.4962
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001272927100.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:17:50
Heat of formation + Delta-G solvation = -80.246487 kcal
Electronic energy + Delta-G solvation = -31107.191485 eV
Core-core repulsion = 26695.714435 eV
Total energy + Delta-G solvation = -4411.477050 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.150 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-49.67291 -48.68754 -42.46655 -41.71496 -39.31242 -37.57628 -35.94504 -33.87195
-32.10789 -31.55721 -30.94442 -29.68705 -27.46197 -26.99185 -25.85600 -23.97647
-22.64285 -22.49962 -21.52907 -21.29283 -21.03046 -19.19600 -18.84360 -18.42033
-18.24688 -17.46551 -17.02340 -16.93358 -16.60232 -16.32458 -15.95185 -15.67723
-15.53903 -15.19565 -15.06367 -14.91447 -14.87984 -14.62907 -14.47745 -14.39816
-14.32337 -14.05765 -13.73036 -13.59674 -13.54073 -13.10976 -13.07530 -12.77607
-12.45840 -12.38612 -12.33046 -12.14598 -11.97061 -11.90409 -11.09715 -10.83695
-10.62867 -9.99325 -9.92698 -9.68760 -8.99530 -8.77387 -6.49450 0.94832
1.26124 1.50250 1.56087 1.61499 1.77537 2.04107 2.15414 2.40628
2.48445 2.51002 2.54541 2.64735 2.96889 3.09824 3.18443 3.30748
3.82182 3.84795 4.05450 4.16273 4.25650 4.26251 4.30932 4.39151
4.41373 4.48896 4.52680 4.54451 4.60293 4.63677 4.76023 4.88793
4.90572 5.09464 5.26161 5.29277 5.30162 5.49239 5.60225 5.76054
5.85649 6.03301 6.08176 6.16398 6.43559 6.65648 6.75028 7.35326
8.62839
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.024768 B = 0.002931 C = 0.002899
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1130.237803 B = 9550.873354 C = 9654.983078
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.041 4.041
3 Si 1.128 2.872
4 H -0.261 1.261
5 H -0.284 1.284
6 H -0.274 1.274
7 C -0.616 4.616
8 H 0.065 0.935
9 C 0.003 3.997
10 C 0.150 3.850
11 N -0.602 5.602
12 C 0.087 3.913
13 C 0.078 3.922
14 F -0.186 7.186
15 C 0.034 3.966
16 N -0.487 5.487
17 C 0.114 3.886
18 C -0.031 4.031
19 C -0.203 4.203
20 C -0.231 4.231
21 C -0.008 4.008
22 N -0.545 5.545
23 H 0.426 0.574
24 C 0.048 3.952
25 C 0.049 3.951
26 F -0.177 7.177
27 C 0.491 3.509
28 O -0.556 6.556
29 H 0.251 0.749
30 H -0.036 1.036
31 H -0.002 1.002
32 H 0.111 0.889
33 H 0.065 0.935
34 H 0.102 0.898
35 H 0.152 0.848
36 H 0.081 0.919
37 H 0.149 0.851
38 H 0.124 0.876
39 H 0.117 0.883
40 H 0.129 0.871
41 H 0.130 0.870
42 H 0.185 0.815
43 H 0.111 0.889
44 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.169 -27.262 -8.967 28.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.238 4.238
3 Si 0.948 3.052
4 H -0.185 1.185
5 H -0.211 1.211
6 H -0.200 1.200
7 C -0.654 4.654
8 H 0.084 0.916
9 C -0.035 4.035
10 C 0.030 3.970
11 N -0.333 5.333
12 C -0.035 4.035
13 C 0.058 3.942
14 F -0.166 7.166
15 C -0.094 4.094
16 N -0.209 5.209
17 C -0.013 4.013
18 C -0.145 4.145
19 C -0.229 4.229
20 C -0.255 4.255
21 C -0.140 4.140
22 N -0.143 5.143
23 H 0.266 0.734
24 C -0.081 4.081
25 C 0.026 3.974
26 F -0.157 7.157
27 C 0.275 3.725
28 O -0.434 6.434
29 H 0.060 0.940
30 H -0.018 1.018
31 H 0.016 0.984
32 H 0.129 0.871
33 H 0.083 0.917
34 H 0.120 0.880
35 H 0.169 0.831
36 H 0.099 0.901
37 H 0.167 0.833
38 H 0.142 0.858
39 H 0.135 0.865
40 H 0.147 0.853
41 H 0.148 0.852
42 H 0.202 0.798
43 H 0.129 0.871
44 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 2.597 -25.320 -8.821 26.939
hybrid contribution -1.878 -1.187 1.057 2.460
sum 0.720 -26.507 -7.764 27.630
Atomic orbital electron populations
1.70871 1.08258 1.29630 1.48598 1.27625 0.96486 1.07342 0.92365
0.82824 0.74544 0.70379 0.77464 1.18505 1.21052 1.19954 1.22378
0.95189 0.92387 1.55459 0.91635 1.19446 0.95368 0.95002 0.93708
1.21437 0.93366 0.78899 1.03339 1.48428 1.55692 1.22430 1.06798
1.23113 0.98012 0.94713 0.87637 1.23036 0.79616 0.98220 0.93329
1.92910 1.38240 1.89659 1.95768 1.23423 0.96679 0.88764 1.00529
1.63814 1.42305 1.03393 1.11352 1.21379 0.88101 0.87192 1.04652
1.21280 0.90579 1.11134 0.91497 1.20937 0.95901 1.09950 0.96103
1.21153 0.95511 1.11470 0.97404 1.22230 0.93437 1.07905 0.90448
1.42204 1.05646 1.56774 1.09708 0.73369 1.23067 0.97652 0.92852
0.94491 1.23092 0.86526 0.97181 0.90615 1.92918 1.53959 1.94887
1.73946 1.21196 0.80160 0.85945 0.85165 1.90716 1.58088 1.71854
1.22759 0.93997 1.01790 0.98388 0.87122 0.91656 0.87970 0.83084
0.90087 0.83296 0.85836 0.86465 0.85329 0.85155 0.79764 0.87132
0.88523
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -60.36 13.65 21.45 0.29 -60.07 16
2 C -0.04 -2.43 5.46 84.65 0.46 -1.97 16
3 Si 1.13 50.73 29.90 68.60 2.05 52.78 16
4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16
5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16
6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16
7 C -0.62 -35.45 9.11 25.60 0.23 -35.21 16
8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16
9 C 0.00 0.15 4.61 29.85 0.14 0.28 16
10 C 0.15 6.20 5.87 86.38 0.51 6.71 16
11 N -0.60 -21.48 2.93 -818.32 -2.40 -23.87 16
12 C 0.09 2.12 6.52 86.75 0.57 2.69 16
13 C 0.08 1.94 1.93 -9.24 -0.02 1.92 16
14 F -0.19 -5.88 17.10 44.97 0.77 -5.11 16
15 C 0.03 0.48 5.56 86.50 0.48 0.96 16
16 N -0.49 -6.41 5.35 -897.07 -4.80 -11.21 16
17 C 0.11 1.08 5.79 85.56 0.50 1.57 16
18 C -0.03 -0.47 5.07 41.08 0.21 -0.26 16
19 C -0.20 -4.11 9.77 22.14 0.22 -3.90 16
20 C -0.23 -4.82 10.86 22.14 0.24 -4.58 16
21 C -0.01 -0.13 11.94 83.21 0.99 0.86 16
22 N -0.55 -6.94 4.74 -182.77 -0.87 -7.81 16
23 H 0.43 2.78 8.17 -92.70 -0.76 2.02 16
24 C 0.05 1.00 5.80 86.53 0.50 1.50 16
25 C 0.05 1.51 1.79 -10.18 -0.02 1.49 16
26 F -0.18 -6.57 17.02 44.97 0.77 -5.80 16
27 C 0.49 19.47 6.78 87.94 0.60 20.06 16
28 O -0.56 -27.45 17.58 -3.05 -0.05 -27.51 16
29 H 0.25 16.70 7.22 -92.71 -0.67 16.03 16
30 H -0.04 -2.30 8.01 -2.38 -0.02 -2.32 16
31 H 0.00 -0.12 8.01 -2.39 -0.02 -0.14 16
32 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16
33 H 0.06 2.88 7.92 -2.38 -0.02 2.86 16
34 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16
35 H 0.15 2.32 7.72 -2.39 -0.02 2.30 16
36 H 0.08 1.09 4.29 -2.39 -0.01 1.08 16
37 H 0.15 1.01 7.96 -2.38 -0.02 0.99 16
38 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16
39 H 0.12 0.91 8.03 -2.39 -0.02 0.89 16
40 H 0.13 2.56 7.81 -2.91 -0.02 2.53 16
41 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16
42 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16
43 H 0.11 2.27 7.60 -2.39 -0.02 2.25 16
44 H 0.10 1.98 6.10 -2.39 -0.01 1.96 16
Total: -1.00 -85.71 363.57 1.75 -83.96
By element:
Atomic # 1 Polarization: 12.12 SS G_CDS: 0.39 Total: 12.51 kcal
Atomic # 6 Polarization: -13.47 SS G_CDS: 5.60 Total: -7.87 kcal
Atomic # 7 Polarization: -95.19 SS G_CDS: -7.77 Total: -102.96 kcal
Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.51 kcal
Atomic # 9 Polarization: -12.45 SS G_CDS: 1.53 Total: -10.92 kcal
Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal
Total: -85.71 1.75 -83.96 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001272927100.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.717 kcal
(2) G-P(sol) polarization free energy of solvation -85.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.964 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.246 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds