Wall clock time and date at job start Tue Mar 31 2020 23:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.49581 * 60.00409 * 10 9 7 12 12 O 1.42899 * 109.46953 * 304.99621 * 11 10 9 13 13 C 1.53044 * 109.49284 * 180.02562 * 10 9 7 14 14 C 1.53105 * 109.50131 * 58.62520 * 13 10 9 15 15 C 1.53196 * 109.33429 * 61.33945 * 14 13 10 16 16 N 1.46932 * 108.77429 * 305.36623 * 15 14 13 17 17 C 1.34777 * 120.62979 * 233.62964 * 16 15 14 18 18 O 1.21280 * 119.99703 * 179.97438 * 17 16 15 19 19 C 1.50698 * 119.99860 * 359.97438 * 17 16 15 20 20 N 1.46500 * 109.47311 * 179.97438 * 19 17 16 21 21 C 1.33878 * 122.76480 * 269.71423 * 20 19 17 22 22 O 1.21233 * 125.39278 * 359.97389 * 21 20 19 23 23 C 1.51307 * 109.20770 * 179.83805 * 21 20 19 24 24 C 1.54222 * 103.55722 * 0.38298 * 23 21 20 25 25 C 1.33878 * 122.76053 * 89.99270 * 20 19 17 26 26 O 1.21218 * 125.39776 * 359.97438 * 25 20 19 27 27 C 1.46923 * 118.73983 * 53.60498 * 16 15 14 28 28 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 29 29 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46897 * 64.99872 * 11 10 9 31 31 H 1.09000 * 109.46832 * 184.99463 * 11 10 9 32 32 H 0.96702 * 113.99947 * 179.97438 * 12 11 10 33 33 H 1.09005 * 109.45548 * 178.60783 * 13 10 9 34 34 H 1.08991 * 109.46646 * 298.56730 * 13 10 9 35 35 H 1.08995 * 109.48942 * 301.38046 * 14 13 10 36 36 H 1.08998 * 109.51489 * 181.30840 * 14 13 10 37 37 H 1.08992 * 109.58662 * 185.58028 * 15 14 13 38 38 H 1.09000 * 109.70205 * 65.21896 * 15 14 13 39 39 H 1.08999 * 109.47248 * 299.99830 * 19 17 16 40 40 H 1.09008 * 109.47117 * 60.00023 * 19 17 16 41 41 H 1.08998 * 110.79645 * 241.77358 * 23 21 20 42 42 H 1.09000 * 110.55113 * 118.87554 * 23 21 20 43 43 H 1.08995 * 110.60977 * 241.25802 * 24 23 21 44 44 H 1.09003 * 110.60990 * 118.29019 * 24 23 21 45 45 H 1.09001 * 109.58895 * 186.60924 * 27 16 15 46 46 H 1.08997 * 109.70453 * 66.25280 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.9426 -3.7413 1.2340 12 8 3.7919 -2.5937 1.2937 13 6 1.0638 -4.8205 -0.0109 14 6 0.1563 -4.7180 -1.2397 15 6 1.0089 -4.8102 -2.5091 16 7 2.0599 -3.7853 -2.4483 17 6 2.2205 -2.9057 -3.4568 18 8 3.0915 -2.0641 -3.3945 19 6 1.3178 -2.9682 -4.6619 20 7 1.6926 -1.9143 -5.6080 21 6 1.1549 -0.6885 -5.5774 22 8 0.3166 -0.3090 -4.7882 23 6 1.7619 0.1489 -6.6818 24 6 2.7467 -0.8184 -7.3694 25 6 2.5969 -2.0992 -6.5777 26 8 3.2005 -3.1292 -6.7877 27 6 2.9321 -3.7370 -1.2670 28 1 -0.4850 0.8400 0.0040 29 1 0.3555 -2.3880 -0.0021 30 1 2.3144 -3.7752 2.1242 31 1 3.5530 -4.6430 1.1856 32 1 4.3815 -2.5801 2.0601 33 1 1.6092 -5.7639 -0.0401 34 1 0.4575 -4.7796 0.8938 35 1 -0.3708 -3.7641 -1.2240 36 1 -0.5669 -5.5334 -1.2272 37 1 0.3816 -4.6389 -3.3838 38 1 1.4652 -5.7980 -2.5743 39 1 1.4199 -3.9412 -5.1424 40 1 0.2836 -2.8241 -4.3491 41 1 2.2921 1.0074 -6.2696 42 1 0.9925 0.4748 -7.3818 43 1 3.7669 -0.4412 -7.2993 44 1 2.4657 -0.9761 -8.4107 45 1 3.5738 -2.8576 -1.3221 46 1 3.5471 -4.6360 -1.2272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273937994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:36 Heat of formation + Delta-G solvation = -111.180967 kcal Electronic energy + Delta-G solvation = -32259.856310 eV Core-core repulsion = 27958.125355 eV Total energy + Delta-G solvation = -4301.730954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.83024 -39.72874 -38.42340 -37.69921 -35.76892 -35.63032 -33.83091 -33.34628 -32.21360 -31.04696 -28.82497 -28.00970 -26.14917 -25.33143 -24.80001 -23.42108 -22.31993 -21.70958 -20.38872 -18.96219 -18.28294 -17.59091 -17.23625 -16.99404 -16.37916 -16.27093 -16.13254 -15.48238 -14.99625 -14.63731 -14.45283 -14.18293 -14.09468 -13.90420 -13.84933 -13.60033 -13.57391 -13.21481 -13.00313 -12.83261 -12.75829 -12.31633 -12.05959 -11.97252 -11.51380 -11.43008 -11.18283 -10.79490 -10.67662 -10.60309 -10.56558 -10.44743 -10.16916 -10.13982 -9.93492 -9.66990 -9.45123 -9.10059 -8.93093 -8.73493 -8.05712 -6.73890 -5.49131 -2.74165 1.63283 2.40923 2.83536 3.09247 3.53696 3.62784 3.69126 3.70472 4.06603 4.21412 4.40356 4.69754 4.77914 4.82608 4.87603 5.05116 5.07760 5.21340 5.27426 5.32898 5.41832 5.44904 5.47419 5.51459 5.56970 5.64632 5.69719 5.79077 5.89439 5.94225 6.03948 6.11225 6.20399 6.27219 6.38827 6.62434 6.80200 6.87350 6.89081 7.08905 7.40222 7.82210 7.92483 8.23634 8.41852 8.67398 8.68709 9.82195 10.29072 10.64755 11.74544 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.005452 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.769199 B = 5134.270021 C = 6589.030305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.021 4.021 3 Si 0.901 3.099 4 H -0.295 1.295 5 H -0.298 1.298 6 H -0.284 1.284 7 C -0.197 4.197 8 H 0.090 0.910 9 N -0.701 5.701 10 C 0.188 3.812 11 C 0.075 3.925 12 O -0.535 6.535 13 C -0.115 4.115 14 C -0.133 4.133 15 C 0.109 3.891 16 N -0.590 5.590 17 C 0.511 3.489 18 O -0.522 6.522 19 C 0.082 3.918 20 N -0.557 5.557 21 C 0.523 3.477 22 O -0.457 6.457 23 C -0.154 4.154 24 C -0.153 4.153 25 C 0.533 3.467 26 O -0.490 6.490 27 C 0.111 3.889 28 H 0.248 0.752 29 H 0.381 0.619 30 H 0.038 0.962 31 H 0.023 0.977 32 H 0.351 0.649 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.102 0.898 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -10.453 -11.475 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.215 4.215 3 Si 0.734 3.266 4 H -0.223 1.223 5 H -0.225 1.225 6 H -0.210 1.210 7 C -0.328 4.328 8 H 0.108 0.892 9 N -0.341 5.341 10 C 0.094 3.906 11 C -0.006 4.006 12 O -0.338 6.338 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.014 4.014 16 N -0.323 5.323 17 C 0.297 3.703 18 O -0.398 6.398 19 C -0.043 4.043 20 N -0.300 5.300 21 C 0.311 3.689 22 O -0.325 6.325 23 C -0.194 4.194 24 C -0.193 4.193 25 C 0.322 3.678 26 O -0.362 6.362 27 C -0.013 4.013 28 H 0.058 0.942 29 H 0.216 0.784 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.195 0.805 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.120 0.880 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.910 -10.037 -11.664 15.506 hybrid contribution 0.302 0.705 0.803 1.110 sum 2.212 -9.332 -10.861 14.489 Atomic orbital electron populations 1.69637 1.04930 1.24944 1.59817 1.24638 0.95330 0.97338 1.04179 0.86239 0.78595 0.84560 0.77203 1.22274 1.22490 1.21012 1.19449 0.91739 0.82979 1.38616 0.89243 1.42393 1.05137 0.99195 1.87417 1.19956 0.90949 0.88221 0.91491 1.22749 0.92073 0.86723 0.99049 1.86985 1.54483 1.43731 1.48562 1.21627 0.97721 0.97531 0.98386 1.21879 0.97797 1.03338 0.94070 1.21689 0.89591 0.91297 0.98851 1.47668 1.33908 1.31800 1.18945 1.20290 0.84955 0.81177 0.83910 1.90701 1.34618 1.35074 1.79365 1.21606 1.01053 0.91966 0.89721 1.46295 1.39402 1.14451 1.29824 1.20816 0.81099 0.81691 0.85340 1.90903 1.29310 1.73433 1.38887 1.22434 1.00266 0.99520 0.97161 1.22428 1.03233 0.92529 1.01090 1.20761 0.76938 0.90249 0.79822 1.90741 1.45241 1.31120 1.69145 1.22144 0.92695 1.01866 0.84599 0.94192 0.78408 0.94377 0.95922 0.80480 0.91989 0.91430 0.89920 0.91297 0.90738 0.91659 0.86685 0.86106 0.86062 0.86332 0.86161 0.86343 0.87974 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.97 13.06 55.49 0.72 -29.24 16 2 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 3 Si 0.90 25.05 29.55 -169.99 -5.02 20.03 16 4 H -0.29 -8.41 7.11 56.52 0.40 -8.01 16 5 H -0.30 -8.24 7.11 56.52 0.40 -7.84 16 6 H -0.28 -7.70 7.11 56.52 0.40 -7.30 16 7 C -0.20 -5.65 8.06 -15.06 -0.12 -5.78 16 8 H 0.09 2.67 5.26 -52.49 -0.28 2.39 16 9 N -0.70 -17.30 4.75 -47.11 -0.22 -17.52 16 10 C 0.19 3.59 0.68 -131.69 -0.09 3.50 16 11 C 0.08 1.33 6.09 37.16 0.23 1.56 16 12 O -0.54 -10.66 10.05 -35.23 -0.35 -11.01 16 13 C -0.11 -1.70 4.77 -26.65 -0.13 -1.83 16 14 C -0.13 -1.85 5.91 -26.58 -0.16 -2.01 16 15 C 0.11 1.45 6.34 -3.71 -0.02 1.43 16 16 N -0.59 -10.67 2.89 -172.77 -0.50 -11.17 16 17 C 0.51 10.31 7.77 -10.99 -0.09 10.22 16 18 O -0.52 -12.84 15.84 5.56 0.09 -12.75 16 19 C 0.08 1.29 4.38 -5.19 -0.02 1.26 16 20 N -0.56 -8.65 2.04 -116.63 -0.24 -8.89 16 21 C 0.52 8.39 8.08 -11.09 -0.09 8.30 16 22 O -0.46 -9.63 17.47 5.60 0.10 -9.53 16 23 C -0.15 -1.53 7.03 -26.95 -0.19 -1.71 16 24 C -0.15 -1.34 7.03 -26.94 -0.19 -1.53 16 25 C 0.53 7.38 8.08 -11.08 -0.09 7.29 16 26 O -0.49 -8.04 17.48 5.61 0.10 -7.94 16 27 C 0.11 2.17 4.92 -3.71 -0.02 2.15 16 28 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 29 H 0.38 10.09 6.42 -40.82 -0.26 9.83 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.35 5.20 9.12 45.56 0.42 5.62 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.46 6.75 -51.93 -0.35 1.11 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.12 1.45 7.63 -51.93 -0.40 1.06 16 40 H 0.12 1.84 7.37 -51.92 -0.38 1.46 16 41 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 2.46 5.82 -51.93 -0.30 2.16 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -41.49 371.27 -6.46 -47.94 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.65 Total: 12.37 kcal Atomic # 6 Polarization: 23.18 SS G_CDS: -1.07 Total: 22.11 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -0.24 Total: -66.82 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.07 Total: -41.23 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.02 Total: 20.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -41.49 -6.46 -47.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273937994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.239 kcal (2) G-P(sol) polarization free energy of solvation -41.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds