Wall clock time and date at job start Tue Mar 31 2020 23:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.49581 * 60.00409 * 10 9 7 12 12 O 1.42899 * 109.46953 * 304.99621 * 11 10 9 13 13 C 1.53044 * 109.49284 * 180.02562 * 10 9 7 14 14 C 1.53105 * 109.50131 * 58.62520 * 13 10 9 15 15 C 1.53196 * 109.33429 * 61.33945 * 14 13 10 16 16 N 1.46932 * 108.77429 * 305.36623 * 15 14 13 17 17 C 1.34777 * 120.62979 * 233.62964 * 16 15 14 18 18 O 1.21280 * 119.99703 * 179.97438 * 17 16 15 19 19 C 1.50698 * 119.99860 * 359.97438 * 17 16 15 20 20 N 1.46500 * 109.47311 * 179.97438 * 19 17 16 21 21 C 1.33878 * 122.76480 * 269.71423 * 20 19 17 22 22 O 1.21233 * 125.39278 * 359.97389 * 21 20 19 23 23 C 1.51307 * 109.20770 * 179.83805 * 21 20 19 24 24 C 1.54222 * 103.55722 * 0.38298 * 23 21 20 25 25 C 1.33878 * 122.76053 * 89.99270 * 20 19 17 26 26 O 1.21218 * 125.39776 * 359.97438 * 25 20 19 27 27 C 1.46923 * 118.73983 * 53.60498 * 16 15 14 28 28 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 29 29 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46897 * 64.99872 * 11 10 9 31 31 H 1.09000 * 109.46832 * 184.99463 * 11 10 9 32 32 H 0.96702 * 113.99947 * 179.97438 * 12 11 10 33 33 H 1.09005 * 109.45548 * 178.60783 * 13 10 9 34 34 H 1.08991 * 109.46646 * 298.56730 * 13 10 9 35 35 H 1.08995 * 109.48942 * 301.38046 * 14 13 10 36 36 H 1.08998 * 109.51489 * 181.30840 * 14 13 10 37 37 H 1.08992 * 109.58662 * 185.58028 * 15 14 13 38 38 H 1.09000 * 109.70205 * 65.21896 * 15 14 13 39 39 H 1.08999 * 109.47248 * 299.99830 * 19 17 16 40 40 H 1.09008 * 109.47117 * 60.00023 * 19 17 16 41 41 H 1.08998 * 110.79645 * 241.77358 * 23 21 20 42 42 H 1.09000 * 110.55113 * 118.87554 * 23 21 20 43 43 H 1.08995 * 110.60977 * 241.25802 * 24 23 21 44 44 H 1.09003 * 110.60990 * 118.29019 * 24 23 21 45 45 H 1.09001 * 109.58895 * 186.60924 * 27 16 15 46 46 H 1.08997 * 109.70453 * 66.25280 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.9426 -3.7413 1.2340 12 8 3.7919 -2.5937 1.2937 13 6 1.0638 -4.8205 -0.0109 14 6 0.1563 -4.7180 -1.2397 15 6 1.0089 -4.8102 -2.5091 16 7 2.0599 -3.7853 -2.4483 17 6 2.2205 -2.9057 -3.4568 18 8 3.0915 -2.0641 -3.3945 19 6 1.3178 -2.9682 -4.6619 20 7 1.6926 -1.9143 -5.6080 21 6 1.1549 -0.6885 -5.5774 22 8 0.3166 -0.3090 -4.7882 23 6 1.7619 0.1489 -6.6818 24 6 2.7467 -0.8184 -7.3694 25 6 2.5969 -2.0992 -6.5777 26 8 3.2005 -3.1292 -6.7877 27 6 2.9321 -3.7370 -1.2670 28 1 -0.4850 0.8400 0.0040 29 1 0.3555 -2.3880 -0.0021 30 1 2.3144 -3.7752 2.1242 31 1 3.5530 -4.6430 1.1856 32 1 4.3815 -2.5801 2.0601 33 1 1.6092 -5.7639 -0.0401 34 1 0.4575 -4.7796 0.8938 35 1 -0.3708 -3.7641 -1.2240 36 1 -0.5669 -5.5334 -1.2272 37 1 0.3816 -4.6389 -3.3838 38 1 1.4652 -5.7980 -2.5743 39 1 1.4199 -3.9412 -5.1424 40 1 0.2836 -2.8241 -4.3491 41 1 2.2921 1.0074 -6.2696 42 1 0.9925 0.4748 -7.3818 43 1 3.7669 -0.4412 -7.2993 44 1 2.4657 -0.9761 -8.4107 45 1 3.5738 -2.8576 -1.3221 46 1 3.5471 -4.6360 -1.2272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273937994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:35 Heat of formation + Delta-G solvation = -146.452862 kcal Electronic energy + Delta-G solvation = -32261.385814 eV Core-core repulsion = 27958.125355 eV Total energy + Delta-G solvation = -4303.260458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.98266 -41.16809 -39.68029 -39.25089 -37.20417 -36.91666 -35.59522 -34.48590 -33.90065 -32.57146 -30.63091 -29.37696 -27.13627 -26.64064 -26.22153 -25.53856 -23.34763 -23.00738 -21.68873 -20.31197 -19.74932 -19.27871 -18.72067 -18.28195 -17.81623 -17.54024 -17.47899 -16.98951 -16.46006 -16.21701 -15.82045 -15.71118 -15.62084 -15.30544 -15.13732 -14.95259 -14.82433 -14.55562 -14.53643 -14.12452 -13.81317 -13.58855 -13.54649 -13.41407 -13.11350 -12.94316 -12.77515 -12.60519 -12.14739 -12.09131 -11.97112 -11.83099 -11.73951 -11.56307 -11.36482 -11.32681 -11.13762 -10.90622 -10.59224 -10.51940 -9.57713 -8.81703 -7.82253 -5.02231 0.49109 1.26082 1.33904 1.39896 1.45215 1.57996 1.73804 2.21087 2.61669 3.18080 3.23089 3.36301 3.47318 3.60712 3.66778 3.87159 3.90235 3.94396 4.01347 4.07015 4.14420 4.15986 4.25728 4.32749 4.50615 4.58336 4.61848 4.69626 4.75148 4.79980 4.86244 4.86986 4.90382 4.99060 5.03065 5.15571 5.41337 5.50642 5.65490 5.74912 5.90260 6.29122 6.41561 6.44175 6.70140 7.14611 7.18307 7.51250 8.20878 8.42728 9.41977 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.005452 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.769199 B = 5134.270021 C = 6589.030305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.092 4.092 3 Si 0.943 3.057 4 H -0.312 1.312 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.161 4.161 8 H 0.079 0.921 9 N -0.708 5.708 10 C 0.173 3.827 11 C 0.075 3.925 12 O -0.572 6.572 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.101 3.899 16 N -0.591 5.591 17 C 0.494 3.506 18 O -0.583 6.583 19 C 0.083 3.917 20 N -0.566 5.566 21 C 0.510 3.490 22 O -0.524 6.524 23 C -0.141 4.141 24 C -0.135 4.135 25 C 0.525 3.475 26 O -0.519 6.519 27 C 0.116 3.884 28 H 0.238 0.762 29 H 0.370 0.630 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.373 0.627 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.148 0.852 40 H 0.120 0.880 41 H 0.127 0.873 42 H 0.159 0.841 43 H 0.137 0.863 44 H 0.165 0.835 45 H 0.048 0.952 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -13.170 -13.018 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.282 4.282 3 Si 0.777 3.223 4 H -0.241 1.241 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.294 4.294 8 H 0.096 0.904 9 N -0.347 5.347 10 C 0.082 3.918 11 C -0.005 4.005 12 O -0.378 6.378 13 C -0.146 4.146 14 C -0.167 4.167 15 C -0.020 4.020 16 N -0.323 5.323 17 C 0.281 3.719 18 O -0.463 6.463 19 C -0.042 4.042 20 N -0.308 5.308 21 C 0.301 3.699 22 O -0.398 6.398 23 C -0.181 4.181 24 C -0.174 4.174 25 C 0.317 3.683 26 O -0.393 6.393 27 C -0.009 4.009 28 H 0.047 0.953 29 H 0.203 0.797 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.220 0.780 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.166 0.834 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.177 0.823 43 H 0.155 0.845 44 H 0.182 0.818 45 H 0.066 0.934 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.618 -12.842 -13.196 18.599 hybrid contribution 0.207 1.342 1.309 1.886 sum 2.825 -11.500 -11.888 16.779 Atomic orbital electron populations 1.69754 1.05718 1.24359 1.63096 1.25198 0.96103 0.99818 1.07043 0.85514 0.78181 0.82442 0.76151 1.24117 1.22295 1.19950 1.19540 0.91282 0.84451 1.34111 0.90371 1.42514 1.04737 1.00316 1.87162 1.20470 0.92027 0.87392 0.91928 1.22732 0.92315 0.87648 0.97846 1.86879 1.55413 1.45309 1.50171 1.21648 0.97063 0.97079 0.98837 1.21860 0.98252 1.02567 0.94022 1.22118 0.88829 0.91605 0.99477 1.47900 1.34424 1.32165 1.17805 1.21135 0.84802 0.80603 0.85388 1.90654 1.37253 1.37496 1.80853 1.21636 0.99746 0.94032 0.88754 1.46609 1.39800 1.14446 1.29956 1.21983 0.79912 0.82279 0.85678 1.90864 1.32438 1.74588 1.41863 1.22586 1.01210 0.98709 0.95545 1.22585 1.03816 0.88699 1.02271 1.21703 0.75612 0.91549 0.79430 1.90719 1.45995 1.32723 1.69905 1.21962 0.92722 1.00972 0.85256 0.95346 0.79724 0.94347 0.91580 0.77981 0.87750 0.91404 0.94462 0.87011 0.88817 0.87510 0.83402 0.86255 0.85537 0.82336 0.84499 0.81787 0.93371 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.94 13.06 21.65 0.28 -64.65 16 2 C -0.09 -5.88 5.50 84.86 0.47 -5.41 16 3 Si 0.94 53.76 29.55 68.60 2.03 55.78 16 4 H -0.31 -18.39 7.11 99.48 0.71 -17.69 16 5 H -0.30 -16.57 7.11 99.48 0.71 -15.86 16 6 H -0.27 -14.89 7.11 99.48 0.71 -14.18 16 7 C -0.16 -9.59 8.06 84.03 0.68 -8.91 16 8 H 0.08 4.84 5.26 -2.91 -0.02 4.82 16 9 N -0.71 -35.75 4.75 -302.96 -1.44 -37.19 16 10 C 0.17 6.42 0.68 3.68 0.00 6.42 16 11 C 0.07 2.49 6.09 71.98 0.44 2.93 16 12 O -0.57 -22.55 10.05 -148.98 -1.50 -24.05 16 13 C -0.11 -2.87 4.77 30.64 0.15 -2.73 16 14 C -0.13 -3.27 5.91 30.70 0.18 -3.08 16 15 C 0.10 2.39 6.34 86.36 0.55 2.94 16 16 N -0.59 -20.96 2.89 -818.91 -2.37 -23.33 16 17 C 0.49 20.37 7.77 87.66 0.68 21.05 16 18 O -0.58 -30.10 15.84 -3.03 -0.05 -30.15 16 19 C 0.08 2.65 4.38 85.63 0.38 3.03 16 20 N -0.57 -17.63 2.04 -760.72 -1.55 -19.18 16 21 C 0.51 16.68 8.08 87.99 0.71 17.39 16 22 O -0.52 -23.40 17.47 -2.89 -0.05 -23.45 16 23 C -0.14 -2.51 7.03 30.45 0.21 -2.29 16 24 C -0.13 -1.92 7.03 30.46 0.21 -1.71 16 25 C 0.52 13.86 8.08 87.99 0.71 14.57 16 26 O -0.52 -16.42 17.48 -2.84 -0.05 -16.47 16 27 C 0.12 4.41 4.92 86.36 0.42 4.84 16 28 H 0.24 15.77 8.31 -92.71 -0.77 14.99 16 29 H 0.37 20.26 6.42 -92.71 -0.60 19.67 16 30 H 0.04 1.27 8.14 -2.38 -0.02 1.26 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.37 10.74 9.12 -74.06 -0.68 10.06 16 33 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 35 H 0.04 1.30 6.75 -2.39 -0.02 1.29 16 36 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.86 5.93 -2.39 -0.01 1.85 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.15 3.55 7.63 -2.39 -0.02 3.53 16 40 H 0.12 3.77 7.37 -2.38 -0.02 3.75 16 41 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.05 2.39 5.82 -2.39 -0.01 2.37 16 46 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -100.93 371.27 0.87 -100.07 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.23 Total: 33.60 kcal Atomic # 6 Polarization: 43.23 SS G_CDS: 5.79 Total: 49.03 kcal Atomic # 7 Polarization: -139.27 SS G_CDS: -5.08 Total: -144.35 kcal Atomic # 8 Polarization: -92.48 SS G_CDS: -1.64 Total: -94.12 kcal Atomic # 14 Polarization: 53.76 SS G_CDS: 2.03 Total: 55.78 kcal Total: -100.93 0.87 -100.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273937994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.387 kcal (2) G-P(sol) polarization free energy of solvation -100.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds