Wall clock time and date at job start Tue Mar 31 2020 23:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.49451 * 299.93520 * 10 9 7 12 12 O 1.42900 * 109.47172 * 59.99870 * 11 10 9 13 13 C 1.53038 * 109.50056 * 179.83898 * 10 9 7 14 14 C 1.53046 * 109.53600 * 301.41217 * 13 10 9 15 15 C 1.53189 * 109.31138 * 298.63299 * 14 13 10 16 16 N 1.46931 * 108.77853 * 54.63468 * 15 14 13 17 17 C 1.34772 * 120.62925 * 126.36442 * 16 15 14 18 18 O 1.21286 * 119.99521 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00131 * 0.03022 * 17 16 15 20 20 N 1.46504 * 109.47056 * 179.97438 * 19 17 16 21 21 C 1.33872 * 122.76304 * 269.70892 * 20 19 17 22 22 O 1.21227 * 125.39860 * 359.97438 * 21 20 19 23 23 C 1.51321 * 109.20748 * 179.84173 * 21 20 19 24 24 C 1.54228 * 103.55174 * 0.38673 * 23 21 20 25 25 C 1.33882 * 122.76097 * 89.99847 * 20 19 17 26 26 O 1.21226 * 125.39536 * 359.97438 * 25 20 19 27 27 C 1.46927 * 118.73570 * 306.39470 * 16 15 14 28 28 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46621 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.46788 * 299.99844 * 11 10 9 32 32 H 0.96695 * 113.99906 * 179.97438 * 12 11 10 33 33 H 1.08993 * 109.46110 * 61.43029 * 13 10 9 34 34 H 1.08996 * 109.46103 * 181.39114 * 13 10 9 35 35 H 1.08998 * 109.49732 * 178.68139 * 14 13 10 36 36 H 1.08999 * 109.49641 * 58.58569 * 14 13 10 37 37 H 1.09000 * 109.58896 * 294.84733 * 15 14 13 38 38 H 1.09000 * 109.70917 * 174.49324 * 15 14 13 39 39 H 1.08994 * 109.46982 * 299.99314 * 19 17 16 40 40 H 1.08996 * 109.47100 * 59.99918 * 19 17 16 41 41 H 1.09004 * 110.79373 * 241.77924 * 23 21 20 42 42 H 1.08999 * 110.41211 * 118.81547 * 23 21 20 43 43 H 1.09005 * 110.60199 * 241.25793 * 24 23 21 44 44 H 1.08999 * 110.60083 * 118.29627 * 24 23 21 45 45 H 1.08999 * 109.58456 * 293.81520 * 27 16 15 46 46 H 1.08999 * 109.58502 * 173.39294 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 2.9317 -3.7420 -1.2484 12 8 3.8606 -2.6560 -1.2561 13 6 1.0640 -4.8205 0.0152 14 6 0.1677 -4.7169 1.2514 15 6 1.0321 -4.8080 2.5129 16 7 2.0825 -3.7831 2.4415 17 6 2.2523 -2.9027 3.4477 18 8 3.1228 -2.0611 3.3766 19 6 1.3608 -2.9641 4.6612 20 7 1.7451 -1.9100 5.6033 21 6 2.6540 -2.0969 6.5682 22 8 3.2540 -3.1293 6.7773 23 6 2.8163 -0.8142 7.3545 24 6 1.8257 0.1536 6.6756 25 6 1.2121 -0.6822 5.5736 26 8 0.3714 -0.3005 4.7880 27 6 2.9437 -3.7359 1.2520 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0092 30 1 3.4761 -4.6863 -1.2481 31 1 2.3009 -3.6868 -2.1356 32 1 4.4486 -2.6469 -2.0237 33 1 0.4488 -4.7806 -0.8837 34 1 1.6095 -5.7638 0.0401 35 1 -0.5552 -5.5326 1.2460 36 1 -0.3594 -3.7629 1.2397 37 1 1.4889 -5.7959 2.5723 38 1 0.4145 -4.6375 3.3947 39 1 0.3239 -2.8203 4.3578 40 1 1.4674 -3.9367 5.1415 41 1 3.8361 -0.4378 7.2747 42 1 2.5448 -0.9713 8.3984 43 1 2.3528 1.0115 6.2582 44 1 1.0615 0.4780 7.3819 45 1 3.5564 -4.6364 1.2086 46 1 3.5859 -2.8565 1.3006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273937996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:40 Heat of formation + Delta-G solvation = -112.323661 kcal Electronic energy + Delta-G solvation = -32256.914240 eV Core-core repulsion = 27955.133735 eV Total energy + Delta-G solvation = -4301.780505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83234 -39.72776 -38.42624 -37.69947 -35.77777 -35.63557 -33.85133 -33.35090 -32.21666 -31.04386 -28.82492 -28.00675 -26.15240 -25.33960 -24.79736 -23.43265 -22.32217 -21.70613 -20.38942 -18.96055 -18.27824 -17.58935 -17.22062 -16.99370 -16.38110 -16.27477 -16.16122 -15.49486 -15.00508 -14.64878 -14.45115 -14.16805 -14.09836 -13.90828 -13.84710 -13.61319 -13.57645 -13.20391 -12.99738 -12.83542 -12.76056 -12.33034 -12.06852 -11.97179 -11.51844 -11.43516 -11.17343 -10.80435 -10.67034 -10.61357 -10.56956 -10.44008 -10.16880 -10.12833 -9.93728 -9.67992 -9.50920 -9.09893 -8.94781 -8.73621 -8.05305 -6.74917 -5.50346 -2.75750 1.62951 2.40826 2.83285 3.09627 3.54214 3.61557 3.67060 3.72380 4.06342 4.21018 4.40003 4.69864 4.77692 4.82326 4.86499 5.04925 5.07721 5.21308 5.27416 5.32607 5.41891 5.45613 5.46454 5.51172 5.56488 5.64970 5.70180 5.79449 5.89229 5.92699 6.04431 6.11681 6.19785 6.27643 6.39275 6.63678 6.80416 6.87233 6.90698 7.09763 7.39966 7.82319 7.92791 8.21734 8.39948 8.67061 8.68277 9.81083 10.28225 10.63723 11.73262 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.005459 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.957513 B = 5128.193090 C = 6578.004641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.020 4.020 3 Si 0.901 3.099 4 H -0.296 1.296 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.201 4.201 8 H 0.090 0.910 9 N -0.702 5.702 10 C 0.188 3.812 11 C 0.076 3.924 12 O -0.540 6.540 13 C -0.115 4.115 14 C -0.133 4.133 15 C 0.109 3.891 16 N -0.590 5.590 17 C 0.511 3.489 18 O -0.522 6.522 19 C 0.081 3.919 20 N -0.557 5.557 21 C 0.533 3.467 22 O -0.490 6.490 23 C -0.153 4.153 24 C -0.154 4.154 25 C 0.522 3.478 26 O -0.457 6.457 27 C 0.112 3.888 28 H 0.249 0.751 29 H 0.381 0.619 30 H 0.023 0.977 31 H 0.040 0.960 32 H 0.353 0.647 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.045 0.955 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.861 -10.406 11.493 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.214 4.214 3 Si 0.734 3.266 4 H -0.224 1.224 5 H -0.224 1.224 6 H -0.209 1.209 7 C -0.332 4.332 8 H 0.107 0.893 9 N -0.342 5.342 10 C 0.094 3.906 11 C -0.005 4.005 12 O -0.342 6.342 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.014 4.014 16 N -0.323 5.323 17 C 0.296 3.704 18 O -0.397 6.397 19 C -0.044 4.044 20 N -0.300 5.300 21 C 0.322 3.678 22 O -0.363 6.363 23 C -0.193 4.193 24 C -0.194 4.194 25 C 0.310 3.690 26 O -0.325 6.325 27 C -0.012 4.012 28 H 0.058 0.942 29 H 0.216 0.784 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.198 0.802 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.063 0.937 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.977 -9.996 11.704 15.518 hybrid contribution 0.279 0.713 -0.826 1.126 sum 2.256 -9.283 10.878 14.477 Atomic orbital electron populations 1.69637 1.04941 1.24987 1.59678 1.24641 0.95334 0.97352 1.04053 0.86237 0.78917 0.84604 0.76874 1.22427 1.22354 1.20917 1.19461 0.91813 0.83016 1.38892 0.89273 1.42404 1.05150 0.99217 1.87457 1.19951 0.90927 0.88173 0.91541 1.22753 0.91007 0.87467 0.99251 1.86889 1.50416 1.49543 1.47402 1.21610 0.97787 0.97523 0.98351 1.21868 0.97786 1.03331 0.94093 1.21688 0.89589 0.91313 0.98850 1.47681 1.34237 1.31747 1.18682 1.20289 0.84877 0.81194 0.84000 1.90705 1.34451 1.35095 1.79487 1.21606 1.01042 0.91963 0.89741 1.46296 1.39241 1.14308 1.30125 1.20764 0.76959 0.90318 0.79742 1.90744 1.45603 1.31020 1.68886 1.22431 1.03181 0.92485 1.01182 1.22442 1.00157 0.99540 0.97240 1.20822 0.81161 0.81698 0.85279 1.90903 1.29207 1.73421 1.39008 1.22133 0.92854 1.01908 0.84316 0.94163 0.78387 0.95889 0.94199 0.80202 0.91437 0.91978 0.91292 0.89925 0.91683 0.90731 0.86119 0.86685 0.86125 0.86376 0.86069 0.86307 0.93662 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.90 13.06 55.49 0.72 -29.18 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 3 Si 0.90 25.03 29.55 -169.99 -5.02 20.01 16 4 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 5 H -0.30 -8.35 7.11 56.52 0.40 -7.95 16 6 H -0.28 -7.92 7.11 56.52 0.40 -7.52 16 7 C -0.20 -5.77 8.21 -15.06 -0.12 -5.89 16 8 H 0.09 2.66 5.28 -52.49 -0.28 2.38 16 9 N -0.70 -17.31 4.75 -47.12 -0.22 -17.53 16 10 C 0.19 3.60 0.68 -131.70 -0.09 3.51 16 11 C 0.08 1.35 6.08 37.16 0.23 1.58 16 12 O -0.54 -10.60 10.11 -35.23 -0.36 -10.95 16 13 C -0.11 -1.70 4.76 -26.69 -0.13 -1.83 16 14 C -0.13 -1.85 5.91 -26.61 -0.16 -2.01 16 15 C 0.11 1.46 6.34 -3.71 -0.02 1.43 16 16 N -0.59 -10.70 2.89 -172.77 -0.50 -11.20 16 17 C 0.51 10.31 7.77 -10.99 -0.09 10.23 16 18 O -0.52 -12.86 15.84 5.55 0.09 -12.77 16 19 C 0.08 1.29 4.38 -5.19 -0.02 1.26 16 20 N -0.56 -8.63 2.04 -116.63 -0.24 -8.87 16 21 C 0.53 7.36 8.08 -11.08 -0.09 7.27 16 22 O -0.49 -8.03 17.47 5.60 0.10 -7.93 16 23 C -0.15 -1.33 7.03 -26.94 -0.19 -1.52 16 24 C -0.15 -1.51 7.03 -26.94 -0.19 -1.70 16 25 C 0.52 8.34 8.08 -11.08 -0.09 8.25 16 26 O -0.46 -9.58 17.48 5.60 0.10 -9.49 16 27 C 0.11 2.19 4.85 -3.71 -0.02 2.18 16 28 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 29 H 0.38 10.08 6.43 -40.82 -0.26 9.81 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.35 5.12 9.12 45.56 0.42 5.54 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.45 6.75 -51.93 -0.35 1.10 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 39 H 0.12 1.84 7.38 -51.93 -0.38 1.46 16 40 H 0.12 1.46 7.62 -51.93 -0.40 1.06 16 41 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 2.51 5.69 -51.93 -0.30 2.21 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -41.47 371.28 -6.46 -47.92 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.64 Total: 12.34 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: -1.08 Total: 22.05 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.24 Total: -66.77 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.07 Total: -41.14 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.02 Total: 20.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -41.47 -6.46 -47.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273937996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.403 kcal (2) G-P(sol) polarization free energy of solvation -41.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds