Wall clock time and date at job start Tue Mar 31 2020 23:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.49451 * 299.93520 * 10 9 7 12 12 O 1.42900 * 109.47172 * 59.99870 * 11 10 9 13 13 C 1.53038 * 109.50056 * 179.83898 * 10 9 7 14 14 C 1.53046 * 109.53600 * 301.41217 * 13 10 9 15 15 C 1.53189 * 109.31138 * 298.63299 * 14 13 10 16 16 N 1.46931 * 108.77853 * 54.63468 * 15 14 13 17 17 C 1.34772 * 120.62925 * 126.36442 * 16 15 14 18 18 O 1.21286 * 119.99521 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00131 * 0.03022 * 17 16 15 20 20 N 1.46504 * 109.47056 * 179.97438 * 19 17 16 21 21 C 1.33872 * 122.76304 * 269.70892 * 20 19 17 22 22 O 1.21227 * 125.39860 * 359.97438 * 21 20 19 23 23 C 1.51321 * 109.20748 * 179.84173 * 21 20 19 24 24 C 1.54228 * 103.55174 * 0.38673 * 23 21 20 25 25 C 1.33882 * 122.76097 * 89.99847 * 20 19 17 26 26 O 1.21226 * 125.39536 * 359.97438 * 25 20 19 27 27 C 1.46927 * 118.73570 * 306.39470 * 16 15 14 28 28 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46621 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.46788 * 299.99844 * 11 10 9 32 32 H 0.96695 * 113.99906 * 179.97438 * 12 11 10 33 33 H 1.08993 * 109.46110 * 61.43029 * 13 10 9 34 34 H 1.08996 * 109.46103 * 181.39114 * 13 10 9 35 35 H 1.08998 * 109.49732 * 178.68139 * 14 13 10 36 36 H 1.08999 * 109.49641 * 58.58569 * 14 13 10 37 37 H 1.09000 * 109.58896 * 294.84733 * 15 14 13 38 38 H 1.09000 * 109.70917 * 174.49324 * 15 14 13 39 39 H 1.08994 * 109.46982 * 299.99314 * 19 17 16 40 40 H 1.08996 * 109.47100 * 59.99918 * 19 17 16 41 41 H 1.09004 * 110.79373 * 241.77924 * 23 21 20 42 42 H 1.08999 * 110.41211 * 118.81547 * 23 21 20 43 43 H 1.09005 * 110.60199 * 241.25793 * 24 23 21 44 44 H 1.08999 * 110.60083 * 118.29627 * 24 23 21 45 45 H 1.08999 * 109.58456 * 293.81520 * 27 16 15 46 46 H 1.08999 * 109.58502 * 173.39294 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 2.9317 -3.7420 -1.2484 12 8 3.8606 -2.6560 -1.2561 13 6 1.0640 -4.8205 0.0152 14 6 0.1677 -4.7169 1.2514 15 6 1.0321 -4.8080 2.5129 16 7 2.0825 -3.7831 2.4415 17 6 2.2523 -2.9027 3.4477 18 8 3.1228 -2.0611 3.3766 19 6 1.3608 -2.9641 4.6612 20 7 1.7451 -1.9100 5.6033 21 6 2.6540 -2.0969 6.5682 22 8 3.2540 -3.1293 6.7773 23 6 2.8163 -0.8142 7.3545 24 6 1.8257 0.1536 6.6756 25 6 1.2121 -0.6822 5.5736 26 8 0.3714 -0.3005 4.7880 27 6 2.9437 -3.7359 1.2520 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0092 30 1 3.4761 -4.6863 -1.2481 31 1 2.3009 -3.6868 -2.1356 32 1 4.4486 -2.6469 -2.0237 33 1 0.4488 -4.7806 -0.8837 34 1 1.6095 -5.7638 0.0401 35 1 -0.5552 -5.5326 1.2460 36 1 -0.3594 -3.7629 1.2397 37 1 1.4889 -5.7959 2.5723 38 1 0.4145 -4.6375 3.3947 39 1 0.3239 -2.8203 4.3578 40 1 1.4674 -3.9367 5.1415 41 1 3.8361 -0.4378 7.2747 42 1 2.5448 -0.9713 8.3984 43 1 2.3528 1.0115 6.2582 44 1 1.0615 0.4780 7.3819 45 1 3.5564 -4.6364 1.2086 46 1 3.5859 -2.8565 1.3006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273937996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:39 Heat of formation + Delta-G solvation = -147.564204 kcal Electronic energy + Delta-G solvation = -32258.442384 eV Core-core repulsion = 27955.133735 eV Total energy + Delta-G solvation = -4303.308650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.97988 -41.16823 -39.67737 -39.25014 -37.20691 -36.91418 -35.61826 -34.48334 -33.90349 -32.57363 -30.62533 -29.37455 -27.13314 -26.65150 -26.21867 -25.54959 -23.34401 -23.00446 -21.68736 -20.30690 -19.74951 -19.26192 -18.71335 -18.28064 -17.83620 -17.54343 -17.47242 -17.01478 -16.46127 -16.21845 -15.81871 -15.70566 -15.62887 -15.30292 -15.13570 -14.94914 -14.81958 -14.55542 -14.52677 -14.12482 -13.82110 -13.59076 -13.54399 -13.41703 -13.11494 -12.94376 -12.75109 -12.59905 -12.14511 -12.13136 -11.98570 -11.82418 -11.73873 -11.56259 -11.41897 -11.33079 -11.13396 -10.90696 -10.59182 -10.51961 -9.57511 -8.82432 -7.83604 -5.03830 0.49394 1.26418 1.33804 1.38079 1.45707 1.58274 1.74040 2.21465 2.60629 3.18415 3.23328 3.36236 3.47293 3.61065 3.65954 3.85498 3.90323 3.94338 4.01589 4.07697 4.14725 4.16546 4.25691 4.32449 4.50776 4.58154 4.61652 4.69904 4.75036 4.80658 4.86708 4.87338 4.90361 4.99726 5.03388 5.16667 5.41802 5.50525 5.65816 5.75254 5.88145 6.29427 6.40953 6.44310 6.70427 7.13628 7.18690 7.50023 8.20117 8.41976 9.40530 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.005459 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.957513 B = 5128.193090 C = 6578.004641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.090 4.090 3 Si 0.945 3.055 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.291 1.291 7 C -0.166 4.166 8 H 0.077 0.923 9 N -0.709 5.709 10 C 0.174 3.826 11 C 0.076 3.924 12 O -0.575 6.575 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.101 3.899 16 N -0.592 5.592 17 C 0.493 3.507 18 O -0.583 6.583 19 C 0.084 3.916 20 N -0.566 5.566 21 C 0.525 3.475 22 O -0.519 6.519 23 C -0.135 4.135 24 C -0.141 4.141 25 C 0.510 3.490 26 O -0.524 6.524 27 C 0.117 3.883 28 H 0.238 0.762 29 H 0.370 0.630 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.375 0.625 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.037 0.963 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.164 0.836 43 H 0.127 0.873 44 H 0.159 0.841 45 H 0.079 0.921 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.442 -13.043 13.076 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.280 4.280 3 Si 0.778 3.222 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.218 1.218 7 C -0.299 4.299 8 H 0.095 0.905 9 N -0.348 5.348 10 C 0.082 3.918 11 C -0.004 4.004 12 O -0.381 6.381 13 C -0.146 4.146 14 C -0.167 4.167 15 C -0.020 4.020 16 N -0.323 5.323 17 C 0.281 3.719 18 O -0.463 6.463 19 C -0.042 4.042 20 N -0.308 5.308 21 C 0.317 3.683 22 O -0.394 6.394 23 C -0.174 4.174 24 C -0.180 4.180 25 C 0.301 3.699 26 O -0.397 6.397 27 C -0.008 4.008 28 H 0.047 0.953 29 H 0.203 0.797 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.223 0.777 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.056 0.944 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.181 0.819 43 H 0.145 0.855 44 H 0.177 0.823 45 H 0.097 0.903 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.601 -12.718 13.281 18.571 hybrid contribution 0.210 1.332 -1.345 1.905 sum 2.811 -11.386 11.935 16.733 Atomic orbital electron populations 1.69755 1.05702 1.24426 1.62872 1.25200 0.96103 0.99824 1.06835 0.85499 0.77341 0.82299 0.77011 1.21392 1.23197 1.21776 1.19536 0.91308 0.84521 1.34566 0.90494 1.42520 1.04750 1.00311 1.87222 1.20461 0.91990 0.87369 0.91962 1.22725 0.91021 0.88812 0.97846 1.86801 1.51320 1.50911 1.49050 1.21633 0.97127 0.97046 0.98833 1.21850 0.98242 1.02585 0.94015 1.22118 0.88810 0.91600 0.99522 1.47912 1.34750 1.32128 1.17541 1.21141 0.84704 0.80609 0.85494 1.90658 1.37106 1.37526 1.80973 1.21632 0.99775 0.94031 0.88716 1.46613 1.39649 1.14314 1.30242 1.21711 0.75635 0.91627 0.79341 1.90721 1.46362 1.32636 1.69666 1.22588 1.03758 0.88658 1.02388 1.22598 1.01041 0.98732 0.95638 1.21992 0.79986 0.82267 0.85610 1.90864 1.32325 1.74565 1.41975 1.21936 0.92867 1.00933 0.85047 0.95278 0.79680 0.91412 0.94550 0.77718 0.91369 0.87765 0.86989 0.94434 0.87571 0.88778 0.86232 0.83438 0.84459 0.81856 0.85462 0.82325 0.90273 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.66 13.06 21.65 0.28 -64.37 16 2 C -0.09 -5.73 5.50 84.86 0.47 -5.26 16 3 Si 0.94 53.77 29.55 68.60 2.03 55.80 16 4 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 5 H -0.30 -17.53 7.11 99.48 0.71 -16.83 16 6 H -0.29 -16.68 7.11 99.48 0.71 -15.97 16 7 C -0.17 -9.93 8.21 84.03 0.69 -9.24 16 8 H 0.08 4.78 5.28 -2.91 -0.02 4.77 16 9 N -0.71 -35.80 4.75 -303.00 -1.44 -37.24 16 10 C 0.17 6.45 0.68 3.68 0.00 6.46 16 11 C 0.08 2.55 6.08 71.98 0.44 2.98 16 12 O -0.57 -22.42 10.11 -148.98 -1.51 -23.93 16 13 C -0.11 -2.88 4.76 30.62 0.15 -2.73 16 14 C -0.13 -3.26 5.91 30.67 0.18 -3.08 16 15 C 0.10 2.39 6.34 86.36 0.55 2.94 16 16 N -0.59 -21.06 2.89 -818.91 -2.37 -23.43 16 17 C 0.49 20.39 7.77 87.66 0.68 21.07 16 18 O -0.58 -30.18 15.84 -3.05 -0.05 -30.22 16 19 C 0.08 2.65 4.38 85.63 0.38 3.03 16 20 N -0.57 -17.56 2.04 -760.72 -1.55 -19.11 16 21 C 0.52 13.81 8.08 88.00 0.71 14.52 16 22 O -0.52 -16.42 17.47 -2.87 -0.05 -16.47 16 23 C -0.14 -1.91 7.03 30.46 0.21 -1.69 16 24 C -0.14 -2.46 7.03 30.46 0.21 -2.24 16 25 C 0.51 16.54 8.08 87.99 0.71 17.25 16 26 O -0.52 -23.23 17.48 -2.86 -0.05 -23.28 16 27 C 0.12 4.49 4.85 86.36 0.42 4.91 16 28 H 0.24 15.75 8.31 -92.71 -0.77 14.98 16 29 H 0.37 20.26 6.43 -92.71 -0.60 19.66 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.38 10.61 9.12 -74.06 -0.68 9.93 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.04 1.31 6.75 -2.39 -0.02 1.29 16 37 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 1.87 5.93 -2.39 -0.01 1.86 16 39 H 0.12 3.76 7.38 -2.39 -0.02 3.75 16 40 H 0.15 3.54 7.62 -2.39 -0.02 3.53 16 41 H 0.14 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.13 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.16 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.05 2.43 5.69 -2.39 -0.01 2.42 16 Total: -1.00 -100.80 371.28 0.86 -99.93 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.23 Total: 33.41 kcal Atomic # 6 Polarization: 43.12 SS G_CDS: 5.80 Total: 48.91 kcal Atomic # 7 Polarization: -139.08 SS G_CDS: -5.08 Total: -144.15 kcal Atomic # 8 Polarization: -92.25 SS G_CDS: -1.65 Total: -93.91 kcal Atomic # 14 Polarization: 53.77 SS G_CDS: 2.03 Total: 55.80 kcal Total: -100.80 0.86 -99.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273937996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.631 kcal (2) G-P(sol) polarization free energy of solvation -100.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds