Wall clock time and date at job start Tue Mar 31 2020 23:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99923 * 2 1 4 4 H 1.48498 * 109.47244 * 239.99700 * 3 2 1 5 5 H 1.48496 * 109.47322 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47141 * 119.99869 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00131 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00331 * 179.97438 * 9 7 2 11 11 C 1.52988 * 109.47205 * 180.59202 * 10 9 7 12 12 H 1.09001 * 109.58976 * 310.02035 * 11 10 9 13 13 C 1.53196 * 109.58710 * 189.73321 * 11 10 9 14 14 C 1.53035 * 109.31452 * 185.43425 * 13 11 10 15 15 C 1.53038 * 109.54039 * 61.36581 * 14 13 11 16 16 C 1.53195 * 109.31342 * 298.63766 * 15 14 13 17 17 N 1.46923 * 109.70585 * 70.37558 * 11 10 9 18 18 C 1.34780 * 120.63097 * 353.46238 * 17 11 10 19 19 O 1.21559 * 119.99575 * 6.63501 * 18 17 11 20 20 C 1.47837 * 120.00376 * 186.63086 * 18 17 11 21 21 C 1.40019 * 120.56402 * 215.28768 * 20 18 17 22 22 C 1.38359 * 118.29210 * 179.73859 * 21 20 18 23 23 C 1.38350 * 119.29715 * 0.53407 * 22 21 20 24 24 C 1.50704 * 119.45564 * 179.74807 * 23 22 21 25 25 F 1.39909 * 109.46785 * 209.97804 * 24 23 22 26 26 F 1.39902 * 109.47437 * 329.97534 * 24 23 22 27 27 N 1.31926 * 121.08445 * 359.72393 * 23 22 21 28 28 C 1.31693 * 121.87851 * 0.02562 * 27 23 22 29 29 H 0.96997 * 119.99520 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99677 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.46746 * 60.59268 * 10 9 7 32 32 H 1.09001 * 109.47215 * 300.59655 * 10 9 7 33 33 H 1.09000 * 109.49915 * 305.38927 * 13 11 10 34 34 H 1.09008 * 109.49317 * 65.45221 * 13 11 10 35 35 H 1.09002 * 109.46419 * 181.38841 * 14 13 11 36 36 H 1.09001 * 109.46409 * 301.36387 * 14 13 11 37 37 H 1.09007 * 109.49395 * 58.58066 * 15 14 13 38 38 H 1.09000 * 109.50235 * 178.68059 * 15 14 13 39 39 H 1.08998 * 109.58760 * 174.41790 * 16 15 14 40 40 H 1.08996 * 109.58354 * 294.84157 * 16 15 14 41 41 H 1.08002 * 120.84939 * 359.96963 * 21 20 18 42 42 H 1.07997 * 120.34699 * 180.23807 * 22 21 20 43 43 H 1.08992 * 109.47351 * 89.97980 * 24 23 22 44 44 H 1.07996 * 119.71652 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0639 -4.8196 -0.0144 12 1 0.3175 -4.6723 0.7662 13 6 1.8092 -6.1357 0.2295 14 6 0.8337 -7.3052 0.0791 15 6 0.2732 -7.3243 -1.3448 16 6 -0.4895 -6.0218 -1.6067 17 7 0.4006 -4.8875 -1.3236 18 6 0.6046 -3.9276 -2.2474 19 8 1.4332 -3.0603 -2.0499 20 6 -0.1792 -3.9293 -3.5008 21 6 0.4029 -3.5156 -4.7052 22 6 -0.3721 -3.5413 -5.8511 23 6 -1.6881 -3.9603 -5.7690 24 6 -2.5372 -3.9843 -7.0139 25 9 -3.8746 -3.7588 -6.6705 26 9 -2.1061 -2.9839 -7.8918 27 7 -2.2117 -4.3396 -4.6191 28 6 -1.5135 -4.3375 -3.5025 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6767 -3.7192 0.8958 32 1 2.6927 -3.7100 -0.8840 33 1 2.6147 -6.2379 -0.4977 34 1 2.2262 -6.1363 1.2367 35 1 1.3559 -8.2414 0.2764 36 1 0.0153 -7.1892 0.7896 37 1 1.0932 -7.4152 -2.0573 38 1 -0.4035 -8.1712 -1.4582 39 1 -0.8057 -5.9867 -2.6492 40 1 -1.3625 -5.9725 -0.9560 41 1 1.4316 -3.1884 -4.7394 42 1 0.0444 -3.2330 -6.7986 43 1 -2.4453 -4.9566 -7.4977 44 1 -1.9774 -4.6547 -2.5804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275004363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:20 Heat of formation + Delta-G solvation = -38.684103 kcal Electronic energy + Delta-G solvation = -30448.959302 eV Core-core repulsion = 26039.284532 eV Total energy + Delta-G solvation = -4409.674770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.15517 -47.16062 -40.89949 -39.52374 -37.00324 -34.71261 -33.17187 -32.63784 -32.15840 -31.52277 -29.86839 -27.39631 -26.10886 -24.62758 -23.80994 -23.11366 -22.63294 -21.41510 -20.62830 -19.30912 -17.94356 -17.73243 -17.67438 -17.15363 -16.59839 -16.23286 -15.43740 -15.12461 -15.05261 -14.60805 -14.53588 -14.34494 -13.97984 -13.81557 -13.65968 -13.59375 -13.48305 -13.30947 -13.01044 -12.91454 -12.81456 -12.55319 -12.24697 -12.18670 -11.76627 -11.45893 -11.10320 -10.96210 -10.79214 -10.72188 -10.63352 -10.38856 -9.99917 -9.95873 -9.82435 -9.56178 -9.21824 -8.80974 -8.43701 -8.17449 -6.60739 -5.61210 -2.79794 0.51657 1.09630 3.04058 3.17770 3.26460 3.52669 3.56676 3.57791 3.72996 3.86943 4.14783 4.56926 4.60277 4.68609 4.71158 4.75405 4.81581 4.87167 4.93886 5.05794 5.12202 5.15388 5.32098 5.41142 5.46146 5.55824 5.72488 5.74297 5.77308 5.81687 5.90696 5.94647 6.01329 6.04000 6.10793 6.29926 6.35200 6.47001 6.59838 6.86118 7.20506 7.60064 7.79085 7.82806 8.56668 8.74109 9.67799 10.25827 10.60057 11.62342 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008558 B = 0.004450 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3270.929929 B = 6290.192515 C = 8863.929739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.021 4.021 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.205 4.205 8 H 0.066 0.934 9 N -0.697 5.697 10 C 0.156 3.844 11 C 0.144 3.856 12 H 0.071 0.929 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.133 4.133 16 C 0.098 3.902 17 N -0.609 5.609 18 C 0.518 3.482 19 O -0.430 6.430 20 C -0.139 4.139 21 C -0.028 4.028 22 C -0.143 4.143 23 C 0.048 3.952 24 C 0.330 3.670 25 F -0.187 7.187 26 F -0.195 7.195 27 N -0.458 5.458 28 C 0.124 3.876 29 H 0.252 0.748 30 H 0.379 0.621 31 H 0.014 0.986 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.128 0.872 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -18.653 -10.213 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.216 4.216 3 Si 0.735 3.265 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.337 4.337 8 H 0.084 0.916 9 N -0.339 5.339 10 C 0.028 3.972 11 C 0.041 3.959 12 H 0.089 0.911 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.171 4.171 16 C -0.026 4.026 17 N -0.347 5.347 18 C 0.303 3.697 19 O -0.298 6.298 20 C -0.145 4.145 21 C -0.054 4.054 22 C -0.163 4.163 23 C -0.091 4.091 24 C 0.275 3.725 25 F -0.168 7.168 26 F -0.176 7.176 27 N -0.167 5.167 28 C -0.035 4.035 29 H 0.062 0.938 30 H 0.212 0.788 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.145 0.855 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.760 -18.218 -10.086 21.006 hybrid contribution 0.765 1.363 -0.067 1.565 sum -1.995 -16.855 -10.152 19.777 Atomic orbital electron populations 1.69640 1.05030 1.25280 1.58739 1.24634 0.95435 0.97336 1.04178 0.86304 0.78463 0.84041 0.77667 1.21593 1.21932 1.21544 1.19099 0.90748 0.84127 1.39722 0.91630 1.42276 1.05325 0.99904 1.86442 1.20995 0.93373 0.84623 0.98179 1.21516 0.95207 0.95706 0.83452 0.91122 1.21911 0.98308 0.94062 1.02317 1.21504 0.99186 0.98313 0.96557 1.21914 1.00363 0.97108 0.97755 1.22038 0.92938 0.85899 1.01677 1.47688 1.48189 1.23558 1.15257 1.17950 0.85672 0.82932 0.83177 1.91189 1.30399 1.34039 1.74168 1.21411 0.96323 1.00795 0.95977 1.21673 1.01031 0.92366 0.90337 1.21761 0.93977 1.00165 1.00431 1.21681 0.93094 1.00131 0.94202 1.20046 0.76216 0.90709 0.85519 1.93039 1.34989 1.95828 1.92929 1.93019 1.89642 1.65043 1.69937 1.67263 1.37476 1.14027 0.97926 1.23183 0.90151 0.94043 0.96099 0.93844 0.78799 0.96880 0.93421 0.91539 0.90765 0.91963 0.91760 0.91665 0.91071 0.89645 0.91365 0.83241 0.83553 0.85483 0.81235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.49 13.06 55.49 0.72 -28.77 16 2 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 3 Si 0.90 23.57 29.55 -169.99 -5.02 18.55 16 4 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.21 -5.97 9.48 -15.06 -0.14 -6.11 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -18.11 3.32 -59.92 -0.20 -18.31 16 10 C 0.16 3.22 4.87 -4.05 -0.02 3.20 16 11 C 0.14 2.28 2.91 -67.60 -0.20 2.08 16 12 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.13 -1.52 5.36 -26.61 -0.14 -1.66 16 14 C -0.12 -1.11 5.88 -26.69 -0.16 -1.27 16 15 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 16 C 0.10 1.06 4.78 -3.71 -0.02 1.05 16 17 N -0.61 -9.14 2.97 -166.33 -0.49 -9.63 16 18 C 0.52 9.38 6.93 -12.33 -0.09 9.29 16 19 O -0.43 -9.85 10.63 5.31 0.06 -9.80 16 20 C -0.14 -2.17 5.27 -104.82 -0.55 -2.73 16 21 C -0.03 -0.39 9.76 -38.87 -0.38 -0.77 16 22 C -0.14 -1.72 9.42 -39.50 -0.37 -2.09 16 23 C 0.05 0.60 6.58 -82.51 -0.54 0.06 16 24 C 0.33 3.37 5.72 36.01 0.21 3.58 16 25 F -0.19 -2.39 17.05 2.25 0.04 -2.36 16 26 F -0.20 -2.15 16.45 2.25 0.04 -2.11 16 27 N -0.46 -6.47 9.94 -9.14 -0.09 -6.56 16 28 C 0.12 1.75 8.56 -17.13 -0.15 1.61 16 29 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 30 H 0.38 10.49 7.40 -40.82 -0.30 10.19 16 31 H 0.01 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.05 1.06 6.20 -51.93 -0.32 0.74 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.89 4.56 -51.93 -0.24 0.65 16 40 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 41 H 0.15 2.04 8.05 -52.49 -0.42 1.62 16 42 H 0.15 1.37 7.59 -52.49 -0.40 0.97 16 43 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.17 2.14 6.13 -52.49 -0.32 1.81 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -35.26 358.78 -8.12 -43.38 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.77 Total: 6.08 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.81 Total: 4.13 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.06 Total: -63.28 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.06 Total: -9.80 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.08 Total: -4.47 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.02 Total: 18.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.26 -8.12 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275004363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.695 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds