Wall clock time and date at job start Tue Mar 31 2020 23:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99923 * 2 1 4 4 H 1.48498 * 109.47244 * 239.99700 * 3 2 1 5 5 H 1.48496 * 109.47322 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47141 * 119.99869 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00131 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00331 * 179.97438 * 9 7 2 11 11 C 1.52988 * 109.47205 * 180.59202 * 10 9 7 12 12 H 1.09001 * 109.58976 * 310.02035 * 11 10 9 13 13 C 1.53196 * 109.58710 * 189.73321 * 11 10 9 14 14 C 1.53035 * 109.31452 * 185.43425 * 13 11 10 15 15 C 1.53038 * 109.54039 * 61.36581 * 14 13 11 16 16 C 1.53195 * 109.31342 * 298.63766 * 15 14 13 17 17 N 1.46923 * 109.70585 * 70.37558 * 11 10 9 18 18 C 1.34780 * 120.63097 * 353.46238 * 17 11 10 19 19 O 1.21559 * 119.99575 * 6.63501 * 18 17 11 20 20 C 1.47837 * 120.00376 * 186.63086 * 18 17 11 21 21 C 1.40019 * 120.56402 * 215.28768 * 20 18 17 22 22 C 1.38359 * 118.29210 * 179.73859 * 21 20 18 23 23 C 1.38350 * 119.29715 * 0.53407 * 22 21 20 24 24 C 1.50704 * 119.45564 * 179.74807 * 23 22 21 25 25 F 1.39909 * 109.46785 * 209.97804 * 24 23 22 26 26 F 1.39902 * 109.47437 * 329.97534 * 24 23 22 27 27 N 1.31926 * 121.08445 * 359.72393 * 23 22 21 28 28 C 1.31693 * 121.87851 * 0.02562 * 27 23 22 29 29 H 0.96997 * 119.99520 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99677 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.46746 * 60.59268 * 10 9 7 32 32 H 1.09001 * 109.47215 * 300.59655 * 10 9 7 33 33 H 1.09000 * 109.49915 * 305.38927 * 13 11 10 34 34 H 1.09008 * 109.49317 * 65.45221 * 13 11 10 35 35 H 1.09002 * 109.46419 * 181.38841 * 14 13 11 36 36 H 1.09001 * 109.46409 * 301.36387 * 14 13 11 37 37 H 1.09007 * 109.49395 * 58.58066 * 15 14 13 38 38 H 1.09000 * 109.50235 * 178.68059 * 15 14 13 39 39 H 1.08998 * 109.58760 * 174.41790 * 16 15 14 40 40 H 1.08996 * 109.58354 * 294.84157 * 16 15 14 41 41 H 1.08002 * 120.84939 * 359.96963 * 21 20 18 42 42 H 1.07997 * 120.34699 * 180.23807 * 22 21 20 43 43 H 1.08992 * 109.47351 * 89.97980 * 24 23 22 44 44 H 1.07996 * 119.71652 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0639 -4.8196 -0.0144 12 1 0.3175 -4.6723 0.7662 13 6 1.8092 -6.1357 0.2295 14 6 0.8337 -7.3052 0.0791 15 6 0.2732 -7.3243 -1.3448 16 6 -0.4895 -6.0218 -1.6067 17 7 0.4006 -4.8875 -1.3236 18 6 0.6046 -3.9276 -2.2474 19 8 1.4332 -3.0603 -2.0499 20 6 -0.1792 -3.9293 -3.5008 21 6 0.4029 -3.5156 -4.7052 22 6 -0.3721 -3.5413 -5.8511 23 6 -1.6881 -3.9603 -5.7690 24 6 -2.5372 -3.9843 -7.0139 25 9 -3.8746 -3.7588 -6.6705 26 9 -2.1061 -2.9839 -7.8918 27 7 -2.2117 -4.3396 -4.6191 28 6 -1.5135 -4.3375 -3.5025 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6767 -3.7192 0.8958 32 1 2.6927 -3.7100 -0.8840 33 1 2.6147 -6.2379 -0.4977 34 1 2.2262 -6.1363 1.2367 35 1 1.3559 -8.2414 0.2764 36 1 0.0153 -7.1892 0.7896 37 1 1.0932 -7.4152 -2.0573 38 1 -0.4035 -8.1712 -1.4582 39 1 -0.8057 -5.9867 -2.6492 40 1 -1.3625 -5.9725 -0.9560 41 1 1.4316 -3.1884 -4.7394 42 1 0.0444 -3.2330 -6.7986 43 1 -2.4453 -4.9566 -7.4977 44 1 -1.9774 -4.6547 -2.5804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275004363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:20 Heat of formation + Delta-G solvation = -62.034932 kcal Electronic energy + Delta-G solvation = -30449.971870 eV Core-core repulsion = 26039.284532 eV Total energy + Delta-G solvation = -4410.687338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.01830 -48.04275 -42.10260 -40.71042 -38.22975 -36.46327 -34.50454 -33.79032 -33.55536 -32.74087 -31.51018 -28.45049 -27.54594 -26.00481 -24.99264 -24.23772 -24.13204 -22.76077 -21.68730 -20.53137 -19.20205 -18.87513 -18.57260 -18.49544 -17.95102 -17.31939 -16.76841 -16.58492 -16.16877 -16.07201 -15.75067 -15.45813 -15.28633 -15.03693 -14.87895 -14.75337 -14.61485 -14.44655 -14.33261 -14.12231 -13.95768 -13.72755 -13.60609 -13.49010 -13.11779 -12.77857 -12.72335 -12.35641 -12.19771 -12.09584 -11.86313 -11.72856 -11.52531 -11.37898 -11.12468 -11.00600 -10.82321 -10.34008 -9.90580 -9.51309 -8.68051 -7.86181 -5.05718 -0.57871 0.00369 1.41721 1.45849 1.51299 1.81356 1.98594 2.27598 2.58397 2.60762 3.09161 3.19335 3.44917 3.49468 3.62751 3.73119 3.82733 3.87360 3.90072 3.99004 4.03789 4.12545 4.14934 4.32674 4.37236 4.44458 4.47998 4.59237 4.70708 4.75726 4.88887 4.90582 4.98032 5.05695 5.12622 5.15038 5.24815 5.27867 5.32664 5.50159 5.53099 5.78880 6.35041 6.49969 6.53021 7.36670 7.42763 8.20326 8.42895 9.38354 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008558 B = 0.004450 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3270.929929 B = 6290.192515 C = 8863.929739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.084 4.084 3 Si 0.964 3.036 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.204 4.204 8 H 0.062 0.938 9 N -0.708 5.708 10 C 0.158 3.842 11 C 0.148 3.852 12 H 0.066 0.934 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.090 3.910 17 N -0.603 5.603 18 C 0.522 3.478 19 O -0.495 6.495 20 C -0.163 4.163 21 C -0.035 4.035 22 C -0.135 4.135 23 C 0.049 3.951 24 C 0.329 3.671 25 F -0.202 7.202 26 F -0.199 7.199 27 N -0.470 5.470 28 C 0.129 3.871 29 H 0.244 0.756 30 H 0.366 0.634 31 H 0.012 0.988 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.146 0.854 42 H 0.177 0.823 43 H 0.181 0.819 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -21.256 -11.551 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.275 4.275 3 Si 0.795 3.205 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.337 4.337 8 H 0.080 0.920 9 N -0.348 5.348 10 C 0.032 3.968 11 C 0.045 3.955 12 H 0.084 0.916 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.165 4.165 16 C -0.031 4.031 17 N -0.339 5.339 18 C 0.308 3.692 19 O -0.368 6.368 20 C -0.168 4.168 21 C -0.062 4.062 22 C -0.154 4.154 23 C -0.090 4.090 24 C 0.275 3.725 25 F -0.184 7.184 26 F -0.180 7.180 27 N -0.179 5.179 28 C -0.029 4.029 29 H 0.053 0.947 30 H 0.197 0.803 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.164 0.836 42 H 0.194 0.806 43 H 0.198 0.802 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.328 -20.917 -11.431 24.068 hybrid contribution 0.919 1.997 0.182 2.205 sum -2.409 -18.920 -11.249 22.143 Atomic orbital electron populations 1.69804 1.06362 1.25191 1.61529 1.25340 0.96278 1.00397 1.05495 0.85320 0.77195 0.80118 0.77876 1.21459 1.22335 1.20298 1.19387 0.90742 0.85649 1.37931 0.92041 1.42301 1.04637 1.00795 1.87109 1.21014 0.94222 0.84612 0.96930 1.21418 0.94412 0.95880 0.83809 0.91574 1.21863 0.98433 0.92791 1.02681 1.21505 0.98833 0.97764 0.96951 1.21903 1.00560 0.96653 0.97353 1.22369 0.92955 0.85252 1.02545 1.47842 1.47901 1.23914 1.14254 1.18461 0.84565 0.82237 0.83944 1.91165 1.33318 1.36389 1.75916 1.21324 0.97049 1.03043 0.95375 1.21821 1.01363 0.92145 0.90837 1.22027 0.93620 0.98986 1.00791 1.22262 0.93660 0.98314 0.94727 1.20538 0.74715 0.92643 0.84574 1.93011 1.36203 1.96048 1.93100 1.93015 1.89585 1.65642 1.69772 1.67357 1.37476 1.14739 0.98320 1.23305 0.89399 0.93413 0.96820 0.94745 0.80293 0.96993 0.95119 0.92060 0.89858 0.89654 0.91048 0.92125 0.88004 0.88938 0.89868 0.83590 0.80569 0.80235 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.87 13.06 21.65 0.28 -63.59 16 2 C -0.08 -5.23 5.50 84.86 0.47 -4.77 16 3 Si 0.96 50.08 29.55 68.60 2.03 52.11 16 4 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 5 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 6 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.20 -12.37 9.48 84.03 0.80 -11.57 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.71 -38.51 3.32 -343.48 -1.14 -39.65 16 10 C 0.16 6.83 4.87 86.38 0.42 7.25 16 11 C 0.15 4.70 2.91 44.97 0.13 4.83 16 12 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 13 C -0.12 -2.67 5.36 30.67 0.16 -2.51 16 14 C -0.11 -1.76 5.88 30.62 0.18 -1.58 16 15 C -0.13 -1.88 6.08 30.67 0.19 -1.69 16 16 C 0.09 1.79 4.78 86.36 0.41 2.20 16 17 N -0.60 -18.05 2.97 -798.42 -2.37 -20.43 16 18 C 0.52 19.49 6.93 86.78 0.60 20.10 16 19 O -0.50 -23.95 10.63 -3.90 -0.04 -23.99 16 20 C -0.16 -5.09 5.27 -19.99 -0.11 -5.20 16 21 C -0.04 -0.99 9.76 22.73 0.22 -0.77 16 22 C -0.13 -2.98 9.42 22.33 0.21 -2.77 16 23 C 0.05 1.12 6.58 42.57 0.28 1.40 16 24 C 0.33 5.66 5.72 71.24 0.41 6.06 16 25 F -0.20 -4.71 17.05 44.97 0.77 -3.95 16 26 F -0.20 -3.80 16.45 44.97 0.74 -3.06 16 27 N -0.47 -12.43 9.94 -182.82 -1.82 -14.25 16 28 C 0.13 3.52 8.56 85.02 0.73 4.25 16 29 H 0.24 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.37 21.31 7.40 -92.71 -0.69 20.62 16 31 H 0.01 0.53 8.12 -2.39 -0.02 0.51 16 32 H 0.03 1.45 6.20 -2.39 -0.01 1.44 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.73 4.56 -2.39 -0.01 1.72 16 40 H 0.08 1.45 8.06 -2.39 -0.02 1.43 16 41 H 0.15 4.13 8.05 -2.91 -0.02 4.10 16 42 H 0.18 2.78 7.59 -2.91 -0.02 2.75 16 43 H 0.18 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.18 4.36 6.13 -2.91 -0.02 4.35 16 Total: -1.00 -81.15 358.78 3.90 -77.25 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.36 Total: 24.32 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 5.10 Total: 15.24 kcal Atomic # 7 Polarization: -132.87 SS G_CDS: -5.05 Total: -137.92 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.04 Total: -23.99 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 1.51 Total: -7.00 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.03 Total: 52.11 kcal Total: -81.15 3.90 -77.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275004363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.214 kcal (2) G-P(sol) polarization free energy of solvation -81.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds