Wall clock time and date at job start Tue Mar 31 2020 23:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 120.00061 * 2 1 4 4 H 1.48494 * 109.46734 * 240.00247 * 3 2 1 5 5 H 1.48506 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47233 * 120.00087 * 3 2 1 7 7 C 1.38809 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00018 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99799 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47369 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47213 * 64.99445 * 11 10 9 13 13 N 1.46502 * 109.46948 * 304.99945 * 11 10 9 14 14 C 1.34776 * 119.99978 * 115.17167 * 13 11 10 15 15 O 1.21554 * 120.00357 * 5.30564 * 14 13 11 16 16 C 1.47883 * 120.00008 * 185.30260 * 14 13 11 17 17 N 1.32835 * 119.72049 * 359.72815 * 16 14 13 18 18 C 1.31367 * 121.68929 * 179.70870 * 17 16 14 19 19 C 1.39002 * 120.93295 * 0.57067 * 18 17 16 20 20 F 1.35096 * 120.33291 * 179.74191 * 19 18 17 21 21 C 1.38727 * 119.34243 * 359.71806 * 19 18 17 22 22 C 1.38840 * 118.44564 * 0.02562 * 21 19 18 23 23 F 1.35088 * 120.48332 * 179.97438 * 22 21 19 24 24 C 1.52994 * 109.47558 * 185.00009 * 11 10 9 25 25 C 1.54269 * 110.03208 * 300.63518 * 24 11 10 26 26 C 1.54880 * 104.19834 * 217.10365 * 25 24 11 27 27 C 1.54889 * 102.75123 * 37.94259 * 26 25 24 28 28 C 1.53879 * 110.03381 * 183.46969 * 24 11 10 29 29 H 0.97002 * 119.99624 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00143 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46990 * 59.99683 * 10 9 7 32 32 H 1.09002 * 109.46981 * 299.99878 * 10 9 7 33 33 H 0.96994 * 120.00042 * 295.17455 * 13 11 10 34 34 H 1.08003 * 119.53927 * 180.26835 * 18 17 16 35 35 H 1.07989 * 120.77592 * 180.02562 * 21 19 18 36 36 H 1.08999 * 110.01624 * 62.07675 * 24 11 10 37 37 H 1.09000 * 110.48670 * 335.78695 * 25 24 11 38 38 H 1.09008 * 110.47985 * 98.42492 * 25 24 11 39 39 H 1.09005 * 110.75650 * 279.63181 * 26 25 24 40 40 H 1.08996 * 110.75773 * 156.26176 * 26 25 24 41 41 H 1.08995 * 110.49065 * 203.38043 * 27 26 25 42 42 H 1.08998 * 110.59666 * 80.78872 * 27 26 25 43 43 H 1.08995 * 110.03391 * 238.56743 * 28 24 11 44 44 H 1.08997 * 110.03322 * 359.95136 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7466 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.4979 -4.8134 -0.9317 13 7 0.1440 -4.6763 1.1310 14 6 -1.1686 -4.4653 0.9096 15 8 -1.6054 -4.4900 -0.2245 16 6 -2.0776 -4.2039 2.0464 17 7 -1.5955 -4.1835 3.2840 18 6 -2.3667 -3.9496 4.3213 19 6 -3.7292 -3.7243 4.1624 20 9 -4.5120 -3.4901 5.2382 21 6 -4.2770 -3.7420 2.8880 22 6 -3.4366 -3.9866 1.8102 23 9 -3.9265 -4.0136 0.5516 24 6 1.8246 -6.1411 0.1256 25 6 2.8093 -6.2980 -1.0515 26 6 2.7634 -7.8095 -1.3863 27 6 1.2675 -8.1585 -1.1874 28 6 0.8442 -7.3240 0.0392 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 2.6847 -3.7144 0.8905 32 1 2.6847 -3.7145 -0.8895 33 1 0.4795 -4.7331 2.0393 34 1 -1.9372 -3.9368 5.3121 35 1 -5.3324 -3.5695 2.7378 36 1 2.3647 -6.1721 1.0719 37 1 2.4792 -5.7077 -1.9063 38 1 3.8147 -6.0045 -0.7494 39 1 3.3875 -8.3772 -0.6960 40 1 3.0674 -7.9861 -2.4180 41 1 1.1476 -9.2226 -0.9846 42 1 0.6868 -7.8702 -2.0636 43 1 0.9091 -7.9296 0.9431 44 1 -0.1736 -6.9566 -0.0915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278252605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:24 Heat of formation + Delta-G solvation = -85.962157 kcal Electronic energy + Delta-G solvation = -30045.613581 eV Core-core repulsion = 25633.888681 eV Total energy + Delta-G solvation = -4411.724900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.40157 -49.03186 -40.52232 -39.35645 -37.87534 -35.27457 -33.59104 -32.69175 -31.49215 -30.74087 -29.54389 -28.55916 -26.24904 -25.01637 -24.04348 -23.15519 -21.63514 -20.54975 -20.37193 -19.75120 -18.43915 -18.33340 -17.71984 -17.11335 -16.46535 -16.15108 -15.99395 -15.58285 -15.44281 -15.27887 -14.89791 -14.64362 -14.46078 -14.29397 -13.66109 -13.50048 -13.41523 -13.26480 -13.12304 -12.90891 -12.65012 -12.51742 -12.05326 -11.39902 -11.21945 -11.02287 -10.94987 -10.87435 -10.76565 -10.62309 -10.49032 -10.44421 -10.20588 -10.10731 -10.06040 -9.67952 -9.66910 -9.13455 -8.83392 -8.55990 -6.86508 -5.70040 -2.99251 0.19149 0.62932 2.65438 3.13153 3.46307 3.47935 3.50448 3.51817 3.64699 3.80953 3.94978 4.29212 4.45611 4.59555 4.70683 4.73283 4.81816 4.87073 5.18751 5.26418 5.39448 5.46641 5.53581 5.56934 5.60199 5.65342 5.73127 5.76609 5.91960 5.93940 6.02590 6.05264 6.15988 6.19923 6.32259 6.36163 6.40922 6.51130 6.53916 6.72327 6.97199 7.24486 7.72808 7.83735 8.47449 8.47694 9.58772 10.17577 10.52314 11.52125 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.006376 B = 0.005277 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4390.364867 B = 5305.272963 C = 8649.864966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.143 3.857 11 C 0.136 3.864 12 H 0.102 0.898 13 N -0.687 5.687 14 C 0.575 3.425 15 O -0.518 6.518 16 C 0.050 3.950 17 N -0.397 5.397 18 C 0.065 3.935 19 C 0.098 3.902 20 F -0.119 7.119 21 C -0.159 4.159 22 C 0.145 3.855 23 F -0.094 7.094 24 C -0.096 4.096 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.118 4.118 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.021 0.979 32 H 0.032 0.968 33 H 0.407 0.593 34 H 0.181 0.819 35 H 0.166 0.834 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 -16.230 7.447 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.014 3.986 11 C 0.032 3.968 12 H 0.120 0.880 13 N -0.337 5.337 14 C 0.359 3.641 15 O -0.393 6.393 16 C -0.090 4.090 17 N -0.107 5.107 18 C -0.097 4.097 19 C 0.076 3.924 20 F -0.097 7.097 21 C -0.186 4.186 22 C 0.122 3.878 23 F -0.071 7.071 24 C -0.116 4.116 25 C -0.154 4.154 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.156 4.156 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.243 0.757 34 H 0.198 0.802 35 H 0.184 0.816 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.440 -16.249 6.676 17.901 hybrid contribution -0.906 1.408 0.489 1.744 sum -4.346 -14.841 7.165 17.043 Atomic orbital electron populations 1.69680 1.05079 1.25565 1.57546 1.24741 0.95466 0.97607 1.03101 0.86288 0.78499 0.83717 0.77786 1.21290 1.21768 1.21357 1.19161 0.90901 0.84169 1.42834 0.91289 1.42292 1.05974 0.99687 1.89350 1.21053 0.93213 0.85850 0.98490 1.21566 0.90692 0.94053 0.90513 0.87976 1.45542 1.06307 1.71030 1.10811 1.17361 0.82574 0.77502 0.86674 1.90868 1.75995 1.50773 1.21631 1.21599 0.91276 1.03148 0.92962 1.67689 1.36885 1.08542 0.97557 1.23023 0.88207 0.99032 0.99465 1.18733 0.90090 1.00189 0.83382 1.91567 1.74000 1.91347 1.52801 1.21649 1.02736 1.03875 0.90343 1.18310 0.91310 0.97475 0.80677 1.91669 1.87379 1.92355 1.35731 1.22060 0.96061 0.93916 0.99535 1.22396 0.98974 0.96008 0.98024 1.22490 0.96368 0.96349 1.00934 1.22354 0.96265 0.99100 0.98480 1.22167 0.99626 0.95993 0.97785 0.93590 0.78083 0.96166 0.95030 0.75741 0.80157 0.81620 0.90687 0.90851 0.91318 0.91801 0.91799 0.92233 0.91639 0.92276 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.06 55.49 0.72 -28.36 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.98 5.43 -59.91 -0.33 -19.30 16 10 C 0.14 2.86 5.61 -4.04 -0.02 2.83 16 11 C 0.14 2.28 1.70 -67.94 -0.12 2.17 16 12 H 0.10 1.97 6.91 -51.93 -0.36 1.61 16 13 N -0.69 -11.44 4.00 -54.74 -0.22 -11.66 16 14 C 0.58 10.68 7.05 -12.31 -0.09 10.59 16 15 O -0.52 -11.16 14.65 5.32 0.08 -11.08 16 16 C 0.05 0.81 6.75 -82.96 -0.56 0.25 16 17 N -0.40 -5.55 9.54 -9.70 -0.09 -5.64 16 18 C 0.07 0.71 11.17 -17.47 -0.20 0.52 16 19 C 0.10 1.05 7.35 -39.12 -0.29 0.76 16 20 F -0.12 -1.18 17.28 2.25 0.04 -1.14 16 21 C -0.16 -1.82 10.14 -39.18 -0.40 -2.22 16 22 C 0.15 2.19 7.31 -38.84 -0.28 1.90 16 23 F -0.09 -1.59 15.54 2.25 0.04 -1.55 16 24 C -0.10 -1.23 2.71 -89.50 -0.24 -1.47 16 25 C -0.12 -1.38 5.33 -25.08 -0.13 -1.52 16 26 C -0.12 -1.26 6.91 -24.74 -0.17 -1.43 16 27 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 28 C -0.12 -1.42 6.23 -25.61 -0.16 -1.58 16 29 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.39 10.89 6.80 -40.82 -0.28 10.61 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.03 0.63 7.22 -51.93 -0.37 0.26 16 33 H 0.41 6.14 8.17 -40.82 -0.33 5.80 16 34 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 35 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.96 7.57 -51.93 -0.39 0.57 16 38 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.94 7.34 -51.93 -0.38 0.56 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -33.67 372.36 -8.14 -41.81 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.89 Total: 11.64 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -3.07 Total: 1.83 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 0.09 Total: -64.97 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.07 Total: -2.69 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.67 -8.14 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278252605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.153 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds