Wall clock time and date at job start Tue Mar 31 2020 23:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 120.00061 * 2 1 4 4 H 1.48494 * 109.46734 * 240.00247 * 3 2 1 5 5 H 1.48506 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47233 * 120.00087 * 3 2 1 7 7 C 1.38809 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00018 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99799 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47369 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47213 * 64.99445 * 11 10 9 13 13 N 1.46502 * 109.46948 * 304.99945 * 11 10 9 14 14 C 1.34776 * 119.99978 * 115.17167 * 13 11 10 15 15 O 1.21554 * 120.00357 * 5.30564 * 14 13 11 16 16 C 1.47883 * 120.00008 * 185.30260 * 14 13 11 17 17 N 1.32835 * 119.72049 * 359.72815 * 16 14 13 18 18 C 1.31367 * 121.68929 * 179.70870 * 17 16 14 19 19 C 1.39002 * 120.93295 * 0.57067 * 18 17 16 20 20 F 1.35096 * 120.33291 * 179.74191 * 19 18 17 21 21 C 1.38727 * 119.34243 * 359.71806 * 19 18 17 22 22 C 1.38840 * 118.44564 * 0.02562 * 21 19 18 23 23 F 1.35088 * 120.48332 * 179.97438 * 22 21 19 24 24 C 1.52994 * 109.47558 * 185.00009 * 11 10 9 25 25 C 1.54269 * 110.03208 * 300.63518 * 24 11 10 26 26 C 1.54880 * 104.19834 * 217.10365 * 25 24 11 27 27 C 1.54889 * 102.75123 * 37.94259 * 26 25 24 28 28 C 1.53879 * 110.03381 * 183.46969 * 24 11 10 29 29 H 0.97002 * 119.99624 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00143 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46990 * 59.99683 * 10 9 7 32 32 H 1.09002 * 109.46981 * 299.99878 * 10 9 7 33 33 H 0.96994 * 120.00042 * 295.17455 * 13 11 10 34 34 H 1.08003 * 119.53927 * 180.26835 * 18 17 16 35 35 H 1.07989 * 120.77592 * 180.02562 * 21 19 18 36 36 H 1.08999 * 110.01624 * 62.07675 * 24 11 10 37 37 H 1.09000 * 110.48670 * 335.78695 * 25 24 11 38 38 H 1.09008 * 110.47985 * 98.42492 * 25 24 11 39 39 H 1.09005 * 110.75650 * 279.63181 * 26 25 24 40 40 H 1.08996 * 110.75773 * 156.26176 * 26 25 24 41 41 H 1.08995 * 110.49065 * 203.38043 * 27 26 25 42 42 H 1.08998 * 110.59666 * 80.78872 * 27 26 25 43 43 H 1.08995 * 110.03391 * 238.56743 * 28 24 11 44 44 H 1.08997 * 110.03322 * 359.95136 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7466 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.4979 -4.8134 -0.9317 13 7 0.1440 -4.6763 1.1310 14 6 -1.1686 -4.4653 0.9096 15 8 -1.6054 -4.4900 -0.2245 16 6 -2.0776 -4.2039 2.0464 17 7 -1.5955 -4.1835 3.2840 18 6 -2.3667 -3.9496 4.3213 19 6 -3.7292 -3.7243 4.1624 20 9 -4.5120 -3.4901 5.2382 21 6 -4.2770 -3.7420 2.8880 22 6 -3.4366 -3.9866 1.8102 23 9 -3.9265 -4.0136 0.5516 24 6 1.8246 -6.1411 0.1256 25 6 2.8093 -6.2980 -1.0515 26 6 2.7634 -7.8095 -1.3863 27 6 1.2675 -8.1585 -1.1874 28 6 0.8442 -7.3240 0.0392 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 2.6847 -3.7144 0.8905 32 1 2.6847 -3.7145 -0.8895 33 1 0.4795 -4.7331 2.0393 34 1 -1.9372 -3.9368 5.3121 35 1 -5.3324 -3.5695 2.7378 36 1 2.3647 -6.1721 1.0719 37 1 2.4792 -5.7077 -1.9063 38 1 3.8147 -6.0045 -0.7494 39 1 3.3875 -8.3772 -0.6960 40 1 3.0674 -7.9861 -2.4180 41 1 1.1476 -9.2226 -0.9846 42 1 0.6868 -7.8702 -2.0636 43 1 0.9091 -7.9296 0.9431 44 1 -0.1736 -6.9566 -0.0915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278252605.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:23 Heat of formation + Delta-G solvation = -108.165704 kcal Electronic energy + Delta-G solvation = -30046.576399 eV Core-core repulsion = 25633.888681 eV Total energy + Delta-G solvation = -4412.687718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.28037 -50.23374 -41.71022 -40.54495 -39.06866 -36.86499 -35.32447 -33.81062 -33.04298 -32.17283 -30.88886 -29.51906 -27.78440 -26.23785 -25.26028 -24.76906 -23.07815 -21.95346 -21.32792 -20.87160 -19.52733 -19.40111 -19.25293 -18.77503 -17.53516 -17.34816 -17.08830 -16.77917 -16.69309 -16.54779 -16.14279 -16.11046 -15.61145 -15.56721 -15.16346 -15.03746 -14.86757 -14.47915 -14.25043 -14.11429 -13.96976 -13.71463 -13.60752 -13.01169 -12.84005 -12.63600 -12.27469 -12.18324 -11.93095 -11.88036 -11.82523 -11.66828 -11.59551 -11.41886 -11.30191 -11.10040 -11.02691 -10.90372 -10.25908 -9.92617 -9.00303 -7.93709 -5.23808 -0.89080 -0.34933 1.44556 1.45559 1.48774 1.54636 1.90927 2.42186 2.46212 2.55074 2.75788 2.88738 3.37295 3.39166 3.43098 3.57263 3.73400 3.80940 3.84991 4.14873 4.19740 4.22136 4.33019 4.41009 4.56774 4.58225 4.61728 4.72725 4.75530 4.84724 4.88271 4.92458 5.05402 5.11978 5.14923 5.22944 5.29634 5.33529 5.46989 5.47496 5.53717 5.60190 6.17174 6.25702 6.51619 7.11611 7.32067 8.08585 8.31440 9.29305 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.006376 B = 0.005277 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4390.364867 B = 5305.272963 C = 8649.864966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.744 5.744 10 C 0.141 3.859 11 C 0.147 3.853 12 H 0.070 0.930 13 N -0.678 5.678 14 C 0.567 3.433 15 O -0.562 6.562 16 C 0.021 3.979 17 N -0.408 5.408 18 C 0.076 3.924 19 C 0.116 3.884 20 F -0.106 7.106 21 C -0.146 4.146 22 C 0.121 3.879 23 F -0.114 7.114 24 C -0.087 4.087 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.114 4.114 29 H 0.248 0.752 30 H 0.370 0.630 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.415 0.585 34 H 0.221 0.779 35 H 0.195 0.805 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.077 0.923 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 -17.103 9.745 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.014 3.986 11 C 0.042 3.958 12 H 0.088 0.912 13 N -0.328 5.328 14 C 0.352 3.648 15 O -0.441 6.441 16 C -0.117 4.117 17 N -0.118 5.118 18 C -0.087 4.087 19 C 0.094 3.906 20 F -0.084 7.084 21 C -0.172 4.172 22 C 0.098 3.902 23 F -0.092 7.092 24 C -0.107 4.107 25 C -0.157 4.157 26 C -0.152 4.152 27 C -0.162 4.162 28 C -0.152 4.152 29 H 0.057 0.943 30 H 0.201 0.799 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.252 0.748 34 H 0.238 0.762 35 H 0.212 0.788 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.095 -17.166 8.985 19.488 hybrid contribution -1.332 1.642 -0.111 2.117 sum -3.427 -15.523 8.875 18.207 Atomic orbital electron populations 1.69879 1.06853 1.25864 1.59597 1.25622 0.96300 1.01286 1.03807 0.85174 0.77096 0.78945 0.78308 1.20415 1.22467 1.19969 1.19635 0.91557 0.85213 1.41094 0.90217 1.42533 1.05523 1.01209 1.89355 1.21251 0.93720 0.84646 0.98961 1.21405 0.89868 0.95077 0.89444 0.91213 1.45485 1.05894 1.70290 1.11103 1.17830 0.83282 0.76696 0.86992 1.90823 1.76833 1.52842 1.23574 1.21312 0.91414 1.05735 0.93230 1.67676 1.37529 1.09369 0.97220 1.23698 0.88293 0.96670 1.00075 1.18665 0.90069 0.98635 0.83243 1.91612 1.73707 1.90976 1.52111 1.21887 1.03698 1.02124 0.89533 1.18580 0.91605 0.99166 0.80860 1.91608 1.87533 1.92819 1.37268 1.22036 0.96059 0.91663 1.00915 1.22425 0.99020 0.97437 0.96824 1.22464 0.95951 0.94776 1.02027 1.22361 0.96663 0.99941 0.97211 1.22123 0.97759 0.95957 0.99359 0.94315 0.79851 0.94708 0.94559 0.74768 0.76234 0.78755 0.88835 0.92842 0.90190 0.89886 0.90920 0.90306 0.93078 0.90412 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.50 13.06 21.65 0.28 -62.22 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.24 -14.00 9.99 84.03 0.84 -13.16 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.74 -39.74 5.43 -343.46 -1.87 -41.61 16 10 C 0.14 5.73 5.61 86.38 0.48 6.21 16 11 C 0.15 5.09 1.70 44.99 0.08 5.17 16 12 H 0.07 2.90 6.91 -2.39 -0.02 2.89 16 13 N -0.68 -23.47 4.00 -445.38 -1.78 -25.25 16 14 C 0.57 22.43 7.05 86.80 0.61 23.04 16 15 O -0.56 -26.40 14.65 -3.89 -0.06 -26.46 16 16 C 0.02 0.70 6.75 41.89 0.28 0.98 16 17 N -0.41 -11.18 9.54 -184.60 -1.76 -12.94 16 18 C 0.08 1.48 11.17 84.95 0.95 2.43 16 19 C 0.12 2.19 7.35 22.57 0.17 2.36 16 20 F -0.11 -1.74 17.28 44.97 0.78 -0.96 16 21 C -0.15 -3.17 10.14 22.53 0.23 -2.94 16 22 C 0.12 3.77 7.31 22.75 0.17 3.93 16 23 F -0.11 -4.16 15.54 44.97 0.70 -3.46 16 24 C -0.09 -2.17 2.71 -10.07 -0.03 -2.20 16 25 C -0.12 -2.72 5.33 31.67 0.17 -2.55 16 26 C -0.11 -2.09 6.91 31.88 0.22 -1.87 16 27 C -0.12 -2.54 6.83 31.67 0.22 -2.32 16 28 C -0.11 -2.69 6.23 31.32 0.20 -2.50 16 29 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.37 21.90 6.80 -92.71 -0.63 21.27 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.46 7.22 -2.39 -0.02 1.44 16 33 H 0.42 12.66 8.17 -92.71 -0.76 11.90 16 34 H 0.22 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.20 2.96 8.06 -2.92 -0.02 2.94 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.43 7.57 -2.39 -0.02 1.41 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.04 1.14 7.34 -2.39 -0.02 1.12 16 Total: -1.00 -76.46 372.36 3.03 -73.42 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -0.33 Total: 37.62 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.04 Total: 12.40 kcal Atomic # 7 Polarization: -136.89 SS G_CDS: -5.12 Total: -142.01 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.06 Total: -26.46 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 1.48 Total: -4.42 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -76.46 3.03 -73.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278252605.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.745 kcal (2) G-P(sol) polarization free energy of solvation -76.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds