Wall clock time and date at job start Tue Mar 31 2020 23:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99808 * 2 1 4 4 H 1.48506 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46873 * 299.99963 * 3 2 1 6 6 H 1.48490 * 109.47209 * 60.00141 * 3 2 1 7 7 C 1.38811 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00290 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64441 * 359.97078 * 9 7 2 11 11 C 1.54920 * 104.82834 * 204.15718 * 10 9 7 12 12 C 1.55149 * 101.58348 * 322.98999 * 11 10 9 13 13 O 1.42899 * 110.87449 * 277.06887 * 12 11 10 14 14 C 1.53005 * 110.72252 * 153.86232 * 12 11 10 15 15 N 1.46496 * 109.47059 * 190.02247 * 14 12 11 16 16 C 1.34774 * 119.99544 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00472 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47238 * 180.02562 * 18 16 15 20 20 N 1.46496 * 109.47294 * 179.97438 * 19 18 16 21 21 C 1.33877 * 122.76269 * 269.71369 * 20 19 18 22 22 O 1.21233 * 125.39623 * 359.97073 * 21 20 19 23 23 C 1.51317 * 109.20784 * 179.83855 * 21 20 19 24 24 C 1.54223 * 103.55187 * 0.38370 * 23 21 20 25 25 C 1.33879 * 122.76436 * 89.99388 * 20 19 18 26 26 O 1.21221 * 125.39361 * 359.97438 * 25 20 19 27 27 C 1.47022 * 125.65218 * 180.02562 * 9 7 2 28 28 H 0.96996 * 119.99929 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.36862 * 322.99340 * 10 9 7 30 30 H 1.08995 * 110.37064 * 85.31934 * 10 9 7 31 31 H 1.08995 * 110.99968 * 204.91345 * 11 10 9 32 32 H 1.09001 * 111.00197 * 81.06743 * 11 10 9 33 33 H 0.96694 * 114.00494 * 177.45384 * 13 12 11 34 34 H 1.08996 * 109.46524 * 70.02353 * 14 12 11 35 35 H 1.08992 * 109.46876 * 310.02686 * 14 12 11 36 36 H 0.96994 * 120.00700 * 0.02562 * 15 14 12 37 37 H 1.09001 * 109.46953 * 299.99667 * 18 16 15 38 38 H 1.09000 * 109.47318 * 59.99264 * 18 16 15 39 39 H 1.09001 * 109.46832 * 299.99686 * 19 18 16 40 40 H 1.09004 * 109.47261 * 59.99705 * 19 18 16 41 41 H 1.09000 * 110.79633 * 241.77153 * 23 21 20 42 42 H 1.09002 * 110.41768 * 118.80715 * 23 21 20 43 43 H 1.08999 * 110.60593 * 241.25311 * 24 23 21 44 44 H 1.09002 * 110.60642 * 118.29522 * 24 23 21 45 45 H 1.08996 * 109.88222 * 59.48939 * 27 9 7 46 46 H 1.09003 * 110.00783 * 298.39746 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1415 -2.5331 0.0006 11 6 -0.4010 -3.9323 0.6130 12 6 0.7785 -4.7525 0.0272 13 8 0.4754 -5.2089 -1.2925 14 6 1.1241 -5.9312 0.9395 15 7 2.3794 -6.5413 0.4947 16 6 2.8826 -7.6041 1.1532 17 8 2.2959 -8.0557 2.1138 18 6 4.1743 -8.2314 0.6960 19 6 4.5191 -9.4109 1.6075 20 7 5.7744 -10.0212 1.1627 21 6 5.8191 -11.0180 0.2701 22 8 4.8566 -11.5252 -0.2649 23 6 7.2614 -11.4091 0.0324 24 6 8.0502 -10.4621 0.9594 25 6 6.9711 -9.6316 1.6193 26 8 7.1602 -8.7525 2.4322 27 6 1.9319 -3.7275 -0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5988 -1.7587 0.6164 30 1 -0.5281 -2.4870 -1.0174 31 1 -1.3586 -4.3327 0.2804 32 1 -0.3506 -3.8978 1.7013 33 1 1.1968 -5.6935 -1.7165 34 1 0.3249 -6.6710 0.8956 35 1 1.2353 -5.5770 1.9643 36 1 2.8486 -6.1804 -0.2738 37 1 4.0636 -8.5852 -0.3290 38 1 4.9734 -7.4915 0.7406 39 1 4.6297 -9.0576 2.6327 40 1 3.7199 -10.1508 1.5623 41 1 7.5398 -11.2466 -1.0089 42 1 7.4253 -12.4486 0.3166 43 1 8.7211 -9.8285 0.3794 44 1 8.6065 -11.0304 1.7048 45 1 2.5588 -3.8506 0.8825 46 1 2.5294 -3.8664 -0.9015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278791742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:23 Heat of formation + Delta-G solvation = -119.443196 kcal Electronic energy + Delta-G solvation = -29451.316762 eV Core-core repulsion = 25149.227531 eV Total energy + Delta-G solvation = -4302.089231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.34191 -40.02193 -39.01176 -38.53164 -36.34169 -35.19563 -34.62885 -34.24410 -32.14119 -31.15009 -29.57712 -28.19796 -26.69450 -25.98031 -24.82059 -23.29692 -22.85985 -20.94107 -20.03654 -19.94740 -19.84193 -18.15488 -17.47109 -17.21216 -16.97521 -16.94915 -16.19748 -15.86507 -15.64629 -15.07804 -14.76302 -14.69220 -14.57411 -14.46825 -14.38831 -13.92793 -13.76184 -13.64493 -13.25183 -13.12153 -12.95451 -12.81928 -12.26232 -12.12580 -11.95620 -11.62708 -11.61226 -11.11223 -11.06465 -10.91223 -10.80696 -10.49922 -10.43179 -10.35593 -10.15435 -10.13851 -9.81140 -9.74126 -9.44207 -9.15429 -8.68308 -6.89058 -5.69214 -3.11757 1.02772 1.97869 2.20448 2.48250 3.08008 3.37473 3.42528 3.45351 3.54697 3.68028 3.86664 4.25087 4.38203 4.42647 4.44583 4.55668 4.57443 4.84946 4.88297 5.00463 5.00845 5.05731 5.10855 5.15633 5.24391 5.36281 5.46275 5.53535 5.60535 5.84990 5.95035 6.20313 6.27010 6.35031 6.37069 6.47017 6.56384 6.59630 6.83034 7.28271 7.31422 7.53491 7.58215 7.81310 7.90563 8.05199 8.31333 9.17224 9.77620 10.41743 11.34605 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.002227 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.932822 B =12572.480819 C =13614.083088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.156 3.844 11 C -0.128 4.128 12 C 0.105 3.895 13 O -0.543 6.543 14 C 0.104 3.896 15 N -0.725 5.725 16 C 0.521 3.479 17 O -0.540 6.540 18 C -0.158 4.158 19 C 0.115 3.885 20 N -0.576 5.576 21 C 0.524 3.476 22 O -0.478 6.478 23 C -0.157 4.157 24 C -0.157 4.157 25 C 0.523 3.477 26 O -0.475 6.475 27 C 0.116 3.884 28 H 0.253 0.747 29 H 0.108 0.892 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.364 0.636 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.400 0.600 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.031 0.969 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.735 -23.985 -0.537 28.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.326 5.326 10 C 0.031 3.969 11 C -0.167 4.167 12 C 0.063 3.937 13 O -0.347 6.347 14 C -0.020 4.020 15 N -0.377 5.377 16 C 0.307 3.693 17 O -0.418 6.418 18 C -0.199 4.199 19 C -0.007 4.007 20 N -0.319 5.319 21 C 0.313 3.687 22 O -0.349 6.349 23 C -0.197 4.197 24 C -0.197 4.197 25 C 0.312 3.688 26 O -0.346 6.346 27 C -0.011 4.011 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.037 0.963 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.210 0.790 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.235 0.765 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.048 0.952 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 13.243 -23.555 0.457 27.026 hybrid contribution 1.248 0.807 -0.630 1.614 sum 14.491 -22.747 -0.173 26.971 Atomic orbital electron populations 1.69800 1.04905 1.24791 1.57317 1.24808 0.95756 0.97794 1.02230 0.85982 0.78599 0.83495 0.77297 1.20540 1.21696 1.21652 1.19097 0.90478 0.82354 1.43423 0.90481 1.44419 1.02005 0.99321 1.86819 1.21952 0.84431 0.91839 0.98676 1.23055 0.95578 0.98275 0.99781 1.22564 0.97933 0.91058 0.82103 1.86630 1.43106 1.76075 1.28913 1.22123 0.85199 0.95324 0.99374 1.45998 1.25840 1.32063 1.33753 1.20202 0.86061 0.80053 0.83010 1.90726 1.61330 1.62460 1.27253 1.21941 0.96989 0.99028 1.01892 1.21497 0.84259 0.95488 0.99419 1.46842 1.09823 1.34537 1.40708 1.20900 0.92510 0.78060 0.77235 1.90815 1.41665 1.54164 1.48249 1.22489 0.91045 1.02690 1.03449 1.22490 0.97859 0.98762 1.00582 1.20905 0.84308 0.82881 0.80725 1.90828 1.84010 1.29234 1.30482 1.21912 0.93691 0.87282 0.98178 0.93659 0.87389 0.96343 0.91033 0.90555 0.78964 0.90584 0.90176 0.76532 0.88201 0.88072 0.87787 0.87824 0.85959 0.86104 0.85966 0.86059 0.95172 0.96003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.26 10.27 -15.06 -0.15 -6.41 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.27 3.39 -170.06 -0.58 -15.84 16 10 C 0.16 3.82 5.88 -2.52 -0.01 3.81 16 11 C -0.13 -2.45 6.26 -24.58 -0.15 -2.61 16 12 C 0.10 1.78 0.93 -88.78 -0.08 1.70 16 13 O -0.54 -8.94 13.10 -35.23 -0.46 -9.40 16 14 C 0.10 1.50 4.80 -4.04 -0.02 1.49 16 15 N -0.72 -8.71 5.13 -60.30 -0.31 -9.02 16 16 C 0.52 6.53 7.83 -10.98 -0.09 6.44 16 17 O -0.54 -8.68 15.98 5.56 0.09 -8.60 16 18 C -0.16 -1.44 6.02 -27.88 -0.17 -1.61 16 19 C 0.11 1.10 4.84 -4.05 -0.02 1.08 16 20 N -0.58 -4.43 2.55 -115.34 -0.29 -4.73 16 21 C 0.52 3.68 8.08 -11.08 -0.09 3.59 16 22 O -0.48 -5.14 17.47 5.60 0.10 -5.04 16 23 C -0.16 -0.34 7.03 -26.94 -0.19 -0.53 16 24 C -0.16 -0.37 7.03 -26.94 -0.19 -0.56 16 25 C 0.52 3.82 8.08 -11.09 -0.09 3.73 16 26 O -0.47 -5.39 17.48 5.61 0.10 -5.29 16 27 C 0.12 2.31 5.76 -3.06 -0.02 2.29 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.11 2.95 5.87 -51.93 -0.31 2.65 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.39 7.96 -51.93 -0.41 0.98 16 33 H 0.36 4.41 8.44 45.56 0.38 4.79 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.25 8.03 -51.93 -0.42 0.84 16 36 H 0.40 3.97 7.47 -40.82 -0.31 3.66 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.11 7.79 -51.93 -0.40 0.71 16 40 H 0.10 1.07 7.78 -51.93 -0.40 0.67 16 41 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.12 0.07 8.14 -51.93 -0.42 -0.36 16 43 H 0.12 0.10 8.14 -51.93 -0.42 -0.32 16 44 H 0.12 0.09 8.14 -51.93 -0.42 -0.34 16 45 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 46 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -37.32 383.03 -7.46 -44.78 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.04 Total: 4.62 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: -1.37 Total: 12.02 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.62 Total: -55.86 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.18 Total: -28.33 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.32 -7.46 -44.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278791742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.664 kcal (2) G-P(sol) polarization free energy of solvation -37.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds