Wall clock time and date at job start Tue Mar 31 2020 23:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99808 * 2 1 4 4 H 1.48506 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46873 * 299.99963 * 3 2 1 6 6 H 1.48490 * 109.47209 * 60.00141 * 3 2 1 7 7 C 1.38811 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00290 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64441 * 359.97078 * 9 7 2 11 11 C 1.54920 * 104.82834 * 204.15718 * 10 9 7 12 12 C 1.55149 * 101.58348 * 322.98999 * 11 10 9 13 13 O 1.42899 * 110.87449 * 277.06887 * 12 11 10 14 14 C 1.53005 * 110.72252 * 153.86232 * 12 11 10 15 15 N 1.46496 * 109.47059 * 190.02247 * 14 12 11 16 16 C 1.34774 * 119.99544 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00472 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47238 * 180.02562 * 18 16 15 20 20 N 1.46496 * 109.47294 * 179.97438 * 19 18 16 21 21 C 1.33877 * 122.76269 * 269.71369 * 20 19 18 22 22 O 1.21233 * 125.39623 * 359.97073 * 21 20 19 23 23 C 1.51317 * 109.20784 * 179.83855 * 21 20 19 24 24 C 1.54223 * 103.55187 * 0.38370 * 23 21 20 25 25 C 1.33879 * 122.76436 * 89.99388 * 20 19 18 26 26 O 1.21221 * 125.39361 * 359.97438 * 25 20 19 27 27 C 1.47022 * 125.65218 * 180.02562 * 9 7 2 28 28 H 0.96996 * 119.99929 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.36862 * 322.99340 * 10 9 7 30 30 H 1.08995 * 110.37064 * 85.31934 * 10 9 7 31 31 H 1.08995 * 110.99968 * 204.91345 * 11 10 9 32 32 H 1.09001 * 111.00197 * 81.06743 * 11 10 9 33 33 H 0.96694 * 114.00494 * 177.45384 * 13 12 11 34 34 H 1.08996 * 109.46524 * 70.02353 * 14 12 11 35 35 H 1.08992 * 109.46876 * 310.02686 * 14 12 11 36 36 H 0.96994 * 120.00700 * 0.02562 * 15 14 12 37 37 H 1.09001 * 109.46953 * 299.99667 * 18 16 15 38 38 H 1.09000 * 109.47318 * 59.99264 * 18 16 15 39 39 H 1.09001 * 109.46832 * 299.99686 * 19 18 16 40 40 H 1.09004 * 109.47261 * 59.99705 * 19 18 16 41 41 H 1.09000 * 110.79633 * 241.77153 * 23 21 20 42 42 H 1.09002 * 110.41768 * 118.80715 * 23 21 20 43 43 H 1.08999 * 110.60593 * 241.25311 * 24 23 21 44 44 H 1.09002 * 110.60642 * 118.29522 * 24 23 21 45 45 H 1.08996 * 109.88222 * 59.48939 * 27 9 7 46 46 H 1.09003 * 110.00783 * 298.39746 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1415 -2.5331 0.0006 11 6 -0.4010 -3.9323 0.6130 12 6 0.7785 -4.7525 0.0272 13 8 0.4754 -5.2089 -1.2925 14 6 1.1241 -5.9312 0.9395 15 7 2.3794 -6.5413 0.4947 16 6 2.8826 -7.6041 1.1532 17 8 2.2959 -8.0557 2.1138 18 6 4.1743 -8.2314 0.6960 19 6 4.5191 -9.4109 1.6075 20 7 5.7744 -10.0212 1.1627 21 6 5.8191 -11.0180 0.2701 22 8 4.8566 -11.5252 -0.2649 23 6 7.2614 -11.4091 0.0324 24 6 8.0502 -10.4621 0.9594 25 6 6.9711 -9.6316 1.6193 26 8 7.1602 -8.7525 2.4322 27 6 1.9319 -3.7275 -0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5988 -1.7587 0.6164 30 1 -0.5281 -2.4870 -1.0174 31 1 -1.3586 -4.3327 0.2804 32 1 -0.3506 -3.8978 1.7013 33 1 1.1968 -5.6935 -1.7165 34 1 0.3249 -6.6710 0.8956 35 1 1.2353 -5.5770 1.9643 36 1 2.8486 -6.1804 -0.2738 37 1 4.0636 -8.5852 -0.3290 38 1 4.9734 -7.4915 0.7406 39 1 4.6297 -9.0576 2.6327 40 1 3.7199 -10.1508 1.5623 41 1 7.5398 -11.2466 -1.0089 42 1 7.4253 -12.4486 0.3166 43 1 8.7211 -9.8285 0.3794 44 1 8.6065 -11.0304 1.7048 45 1 2.5588 -3.8506 0.8825 46 1 2.5294 -3.8664 -0.9015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278791742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:22 Heat of formation + Delta-G solvation = -149.960601 kcal Electronic energy + Delta-G solvation = -29452.640096 eV Core-core repulsion = 25149.227531 eV Total energy + Delta-G solvation = -4303.412565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.88847 -41.17782 -39.94087 -39.65614 -37.02084 -36.84210 -35.45727 -35.14148 -34.01161 -31.95190 -31.24684 -29.66933 -27.59491 -27.08433 -26.05880 -24.68264 -23.28835 -22.43754 -21.45236 -21.36912 -20.44131 -19.10865 -18.85125 -18.26514 -17.89079 -17.54675 -17.32475 -16.86630 -16.78461 -16.73378 -15.94249 -15.73496 -15.57844 -15.29630 -15.13934 -15.01340 -14.88765 -14.63564 -14.45422 -14.40204 -13.92270 -13.65539 -13.56906 -13.41815 -13.32276 -12.94460 -12.81272 -12.44498 -12.39357 -12.10510 -12.07069 -12.00262 -11.83162 -11.69752 -11.65127 -11.19734 -11.08178 -10.99011 -10.82950 -10.76930 -10.26174 -8.93413 -7.80104 -5.25336 0.49705 1.39336 1.45774 1.46860 1.47527 1.57058 1.68532 2.11044 2.46943 3.12757 3.22963 3.29476 3.29757 3.39365 3.54530 3.66158 3.66485 3.78699 3.81927 3.88629 3.92703 4.22390 4.29507 4.35186 4.43663 4.52041 4.57345 4.64874 4.76148 4.76285 4.82120 4.91968 4.94268 4.96081 4.98023 5.04834 5.23974 5.44088 5.58451 5.77008 5.81503 6.26532 6.32388 6.33768 6.72648 6.76493 7.05948 7.06981 7.73809 8.37462 9.22229 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.002227 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.932822 B =12572.480819 C =13614.083088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.083 0.917 9 N -0.623 5.623 10 C 0.159 3.841 11 C -0.121 4.121 12 C 0.126 3.874 13 O -0.554 6.554 14 C 0.118 3.882 15 N -0.716 5.716 16 C 0.521 3.479 17 O -0.578 6.578 18 C -0.144 4.144 19 C 0.113 3.887 20 N -0.579 5.579 21 C 0.519 3.481 22 O -0.522 6.522 23 C -0.140 4.140 24 C -0.141 4.141 25 C 0.518 3.482 26 O -0.524 6.524 27 C 0.112 3.888 28 H 0.247 0.753 29 H 0.075 0.925 30 H -0.015 1.015 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.386 0.614 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.413 0.587 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.036 0.964 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.687 -25.861 -1.525 31.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.101 0.899 9 N -0.349 5.349 10 C 0.034 3.966 11 C -0.160 4.160 12 C 0.084 3.916 13 O -0.361 6.361 14 C -0.007 4.007 15 N -0.368 5.368 16 C 0.308 3.692 17 O -0.458 6.458 18 C -0.184 4.184 19 C -0.009 4.009 20 N -0.322 5.322 21 C 0.311 3.689 22 O -0.396 6.396 23 C -0.179 4.179 24 C -0.180 4.180 25 C 0.310 3.690 26 O -0.398 6.398 27 C -0.013 4.013 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.003 0.997 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.235 0.765 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.166 0.834 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.054 0.946 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.259 -25.477 -0.568 30.228 hybrid contribution 0.329 1.338 -0.342 1.420 sum 16.588 -24.138 -0.910 29.303 Atomic orbital electron populations 1.70056 1.06312 1.25054 1.58484 1.25681 0.96659 1.01164 1.02640 0.84953 0.78125 0.79183 0.76708 1.18917 1.21979 1.21814 1.19491 0.91051 0.83609 1.42620 0.89878 1.44707 1.02558 1.00809 1.86831 1.21662 0.84258 0.94174 0.96470 1.22909 0.97402 0.95453 1.00208 1.22193 0.95463 0.91043 0.82912 1.86595 1.44466 1.76406 1.28650 1.21794 0.86467 0.94329 0.98075 1.45866 1.25088 1.31833 1.34061 1.20728 0.86652 0.79594 0.82240 1.90714 1.62586 1.63543 1.28983 1.21862 0.95238 0.98806 1.02521 1.21287 0.85317 0.95468 0.98823 1.47028 1.09389 1.34781 1.40961 1.21810 0.94244 0.76906 0.75897 1.90797 1.43620 1.55376 1.49768 1.22612 0.86613 1.03772 1.04915 1.22613 0.96333 0.98228 1.00837 1.21847 0.85046 0.82367 0.79779 1.90806 1.84606 1.31608 1.32751 1.22119 0.94782 0.85577 0.98834 0.94274 0.90685 0.99660 0.89576 0.89590 0.76521 0.90190 0.91131 0.75029 0.86227 0.86904 0.89619 0.89184 0.83359 0.83675 0.83512 0.83697 0.94582 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.18 10.09 21.65 0.22 -56.97 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 3 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.24 -13.35 10.27 84.03 0.86 -12.49 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.62 -31.97 3.39 -691.96 -2.35 -34.32 16 10 C 0.16 8.06 5.88 86.86 0.51 8.57 16 11 C -0.12 -4.61 6.26 31.99 0.20 -4.41 16 12 C 0.13 4.09 0.93 -9.60 -0.01 4.08 16 13 O -0.55 -17.18 13.10 -148.98 -1.95 -19.13 16 14 C 0.12 3.25 4.80 86.38 0.41 3.66 16 15 N -0.72 -15.92 5.13 -463.07 -2.38 -18.30 16 16 C 0.52 12.56 7.83 87.66 0.69 13.25 16 17 O -0.58 -18.63 15.98 -3.02 -0.05 -18.68 16 18 C -0.14 -2.47 6.02 29.85 0.18 -2.29 16 19 C 0.11 2.19 4.84 86.38 0.42 2.61 16 20 N -0.58 -8.29 2.55 -756.67 -1.93 -10.22 16 21 C 0.52 6.31 8.08 87.99 0.71 7.02 16 22 O -0.52 -10.74 17.47 -2.89 -0.05 -10.79 16 23 C -0.14 -0.03 7.03 30.46 0.21 0.18 16 24 C -0.14 -0.09 7.03 30.46 0.21 0.12 16 25 C 0.52 6.72 8.08 87.99 0.71 7.43 16 26 O -0.52 -11.67 17.48 -2.85 -0.05 -11.72 16 27 C 0.11 4.35 5.76 86.73 0.50 4.85 16 28 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.08 4.30 5.87 -2.39 -0.01 4.28 16 30 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 31 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.09 3.10 7.96 -2.39 -0.02 3.08 16 33 H 0.39 8.27 8.44 -74.06 -0.62 7.64 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.13 8.03 -2.39 -0.02 2.11 16 36 H 0.41 7.12 7.47 -92.71 -0.69 6.43 16 37 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 1.94 7.79 -2.39 -0.02 1.93 16 40 H 0.09 1.96 7.78 -2.38 -0.02 1.94 16 41 H 0.15 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.15 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H 0.15 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.04 1.37 7.82 -2.39 -0.02 1.36 16 46 H 0.04 1.32 8.07 -2.39 -0.02 1.30 16 Total: -1.00 -85.51 383.03 -0.73 -86.23 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -0.29 Total: 17.01 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 6.08 Total: 29.14 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -6.44 Total: -119.81 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -2.10 Total: -60.31 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -85.51 -0.73 -86.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278791742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.726 kcal (2) G-P(sol) polarization free energy of solvation -85.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds