Wall clock time and date at job start Tue Mar 31 2020 22:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99795 * 2 1 4 4 C 1.53001 * 109.47052 * 269.99638 * 3 2 1 5 5 C 1.53007 * 109.47033 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46859 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46907 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47227 * 180.02562 * 7 6 5 9 9 N 1.46503 * 109.47202 * 180.02562 * 8 7 6 10 10 C 1.36936 * 119.99703 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00484 * 359.97438 * 10 9 8 12 12 C 1.38810 * 119.99940 * 179.97438 * 10 9 8 13 13 N 1.31626 * 119.99802 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00314 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46896 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47420 * 119.99927 * 14 12 10 17 17 H 1.48502 * 109.46942 * 239.99837 * 14 12 10 18 18 C 1.34781 * 120.00022 * 179.97438 * 2 1 3 19 19 O 1.21521 * 119.99647 * 184.48306 * 18 2 1 20 20 C 1.48070 * 120.00063 * 4.48480 * 18 2 1 21 21 C 1.39873 * 120.93289 * 311.08276 * 20 18 2 22 22 C 1.38083 * 119.01683 * 180.34431 * 21 20 18 23 23 N 1.31844 * 120.94155 * 359.65046 * 22 21 20 24 24 C 1.31755 * 122.07332 * 0.02957 * 23 22 21 25 25 C 1.38357 * 120.87190 * 0.02562 * 24 23 22 26 26 Cl 1.73601 * 120.52110 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.47236 * 273.01995 * 1 2 3 28 28 H 1.08992 * 109.47224 * 33.01728 * 1 2 3 29 29 H 1.09003 * 109.47256 * 153.02373 * 1 2 3 30 30 H 1.09001 * 109.47533 * 30.00164 * 3 2 1 31 31 H 1.09001 * 109.47261 * 149.99951 * 3 2 1 32 32 H 1.08994 * 109.47614 * 300.00342 * 4 3 2 33 33 H 1.09002 * 109.46917 * 60.00600 * 4 3 2 34 34 H 1.09000 * 109.46857 * 300.00377 * 5 4 3 35 35 H 1.09002 * 109.46746 * 60.00536 * 5 4 3 36 36 H 1.09001 * 109.47186 * 300.00435 * 6 5 4 37 37 H 1.09001 * 109.47201 * 59.99972 * 6 5 4 38 38 H 1.09001 * 109.47395 * 300.00113 * 7 6 5 39 39 H 1.09001 * 109.47372 * 59.99882 * 7 6 5 40 40 H 1.09007 * 109.46860 * 299.99776 * 8 7 6 41 41 H 1.09001 * 109.47199 * 59.99583 * 8 7 6 42 42 H 0.96997 * 119.99720 * 359.97438 * 9 8 7 43 43 H 0.96999 * 119.99963 * 179.97438 * 13 12 10 44 44 H 1.08000 * 120.48797 * 0.02562 * 21 20 18 45 45 H 1.08002 * 119.52855 * 179.67739 * 22 21 20 46 46 H 1.08003 * 119.56573 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2169 3.0358 -1.4425 6 6 3.4714 3.4777 -2.8850 7 6 4.2363 4.8027 -2.8850 8 6 4.4903 5.2450 -4.3275 9 7 5.2233 6.5135 -4.3275 10 6 5.5653 7.1066 -5.5135 11 1 5.2950 6.6391 -6.4488 12 6 6.2593 8.3087 -5.5135 13 7 6.5883 8.8787 -4.3736 14 14 6.7253 9.1182 -7.1313 15 1 6.2426 8.2826 -8.2599 16 1 6.1020 10.4639 -7.2091 17 1 8.2022 9.2514 -7.2108 18 6 2.1389 -1.1672 0.0005 19 8 3.3513 -1.1687 0.0828 20 6 1.4020 -2.4476 -0.0992 21 6 0.3011 -2.7095 0.7230 22 6 -0.3527 -3.9197 0.6016 23 7 0.0428 -4.8186 -0.2781 24 6 1.0702 -4.6114 -1.0765 25 6 1.7840 -3.4274 -1.0223 26 17 3.1366 -3.1643 -2.0782 27 1 -0.3634 0.0541 1.0263 28 1 -0.3633 0.8616 -0.5599 29 1 -0.3634 -0.9159 -0.4662 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 3.0415 0.9508 -1.9564 33 1 1.5000 1.8407 -1.9563 34 1 2.6274 3.7952 -0.9288 35 1 4.1693 2.9058 -0.9286 36 1 4.0606 2.7183 -3.3991 37 1 2.5188 3.6076 -3.3986 38 1 3.6474 5.5623 -2.3708 39 1 5.1889 4.6724 -2.3715 40 1 5.0791 4.4856 -4.8421 41 1 3.5375 5.3755 -4.8407 42 1 5.4663 6.9331 -3.4875 43 1 7.0736 9.7186 -4.3736 44 1 -0.0294 -1.9782 1.4457 45 1 -1.2005 -4.1327 1.2359 46 1 1.3595 -5.3762 -1.7820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316723177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:12 Heat of formation + Delta-G solvation = -5.594215 kcal Electronic energy + Delta-G solvation = -25579.178847 eV Core-core repulsion = 21722.735643 eV Total energy + Delta-G solvation = -3856.443204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36922 -39.76097 -37.18366 -36.84583 -35.90520 -34.45497 -33.37103 -31.97100 -31.74217 -30.13261 -27.77864 -27.09742 -25.28730 -24.26767 -23.81050 -22.42343 -20.98579 -20.76025 -20.25887 -18.27830 -17.57348 -17.08976 -16.97119 -16.60848 -15.97330 -15.76035 -15.53884 -14.83104 -14.71342 -14.62874 -14.28929 -13.99620 -13.68592 -13.47550 -13.39487 -13.07190 -12.84490 -12.67066 -12.64440 -12.53412 -12.29436 -11.68734 -11.47514 -11.46813 -11.16236 -10.86557 -10.85421 -10.67626 -10.67150 -10.45107 -10.39637 -10.22291 -10.04800 -9.93358 -9.64385 -9.61805 -9.14767 -8.82964 -6.86516 -5.72382 -3.00565 0.04408 0.21888 1.46095 2.08190 2.39314 2.95963 3.45839 3.51090 3.53713 3.65001 3.70995 3.96897 4.10750 4.41851 4.51434 4.59544 4.66408 4.67594 4.82101 4.88056 4.93983 5.03684 5.10208 5.12248 5.16973 5.33956 5.47904 5.56176 5.63476 5.68672 5.70594 5.78381 5.94145 5.99467 6.09175 6.19515 6.38356 6.38549 6.44857 6.52736 6.74910 6.95062 6.99207 7.09543 7.55384 7.74385 8.47113 9.57766 10.17606 10.52303 11.50863 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023294 B = 0.001581 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.728987 B =17709.543671 C =18383.885726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.114 3.886 4 C -0.134 4.134 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.126 4.126 8 C 0.152 3.848 9 N -0.735 5.735 10 C -0.238 4.238 11 H 0.070 0.930 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.907 3.093 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.292 1.292 18 C 0.556 3.444 19 O -0.504 6.504 20 C -0.073 4.073 21 C -0.134 4.134 22 C 0.100 3.900 23 N -0.457 5.457 24 C 0.115 3.885 25 C -0.052 4.052 26 Cl -0.024 7.024 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.152 0.848 45 H 0.171 0.829 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.150 -28.909 14.389 37.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C -0.008 4.008 4 C -0.172 4.172 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.164 4.164 8 C 0.024 3.976 9 N -0.379 5.379 10 C -0.369 4.369 11 H 0.088 0.912 12 C -0.213 4.213 13 N -0.584 5.584 14 Si 0.739 3.261 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C 0.341 3.659 19 O -0.378 6.378 20 C -0.085 4.085 21 C -0.155 4.155 22 C -0.056 4.056 23 N -0.166 5.166 24 C -0.043 4.043 25 C -0.082 4.082 26 Cl 0.005 6.995 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.169 0.831 45 H 0.188 0.812 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -18.805 -29.620 14.108 37.815 hybrid contribution 0.804 1.510 -0.637 1.826 sum -18.001 -28.109 13.471 35.995 Atomic orbital electron populations 1.22066 0.79257 1.03903 1.02179 1.47768 1.07227 1.05937 1.73022 1.21672 0.97889 0.83090 0.98128 1.21962 1.00969 0.98274 0.96027 1.21522 1.00276 0.95532 0.98021 1.21490 1.00375 0.97564 0.95673 1.21725 1.00014 0.96012 0.98613 1.20662 0.94627 0.88856 0.93433 1.42403 1.66970 1.22157 1.06380 1.19316 1.28944 1.02383 0.86246 0.91161 1.24755 1.01526 0.98104 0.96878 1.69679 1.45260 1.19563 1.23874 0.86103 0.77864 0.79190 0.82982 1.20578 1.21878 1.21872 1.18065 0.87147 0.83101 0.77557 1.90868 1.12759 1.86590 1.47549 1.20311 0.96220 0.95318 0.96635 1.22484 0.94074 0.99500 0.99426 1.22906 0.98870 0.88777 0.95066 1.67719 1.12583 1.32222 1.04101 1.22891 0.90339 0.94144 0.96934 1.22242 0.93854 0.96263 0.95876 1.98452 1.41807 1.96320 1.62917 0.91921 0.90295 0.90790 0.89964 0.89288 0.91516 0.91863 0.91854 0.91681 0.92165 0.92229 0.92150 0.92095 0.96579 0.96604 0.78348 0.93621 0.83087 0.81230 0.81006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 9.12 59.85 0.55 0.82 16 2 N -0.61 -4.62 2.87 -182.61 -0.52 -5.14 16 3 C 0.11 0.92 5.46 -4.04 -0.02 0.90 16 4 C -0.13 -1.25 5.54 -26.73 -0.15 -1.40 16 5 C -0.12 -1.23 5.21 -26.73 -0.14 -1.37 16 6 C -0.11 -1.49 5.21 -26.73 -0.14 -1.63 16 7 C -0.13 -2.12 5.33 -26.73 -0.14 -2.26 16 8 C 0.15 3.24 6.26 -4.04 -0.03 3.21 16 9 N -0.74 -19.69 5.60 -59.90 -0.34 -20.03 16 10 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 11 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 12 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 13 N -0.93 -29.11 13.06 55.49 0.72 -28.38 16 14 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 18 C 0.56 5.51 6.83 -12.22 -0.08 5.43 16 19 O -0.50 -6.87 15.55 5.35 0.08 -6.79 16 20 C -0.07 -0.58 4.92 -104.62 -0.51 -1.09 16 21 C -0.13 -0.65 7.73 -39.03 -0.30 -0.95 16 22 C 0.10 0.46 11.17 -17.60 -0.20 0.27 16 23 N -0.46 -3.14 10.33 -13.27 -0.14 -3.27 16 24 C 0.12 0.79 10.99 -17.54 -0.19 0.59 16 25 C -0.05 -0.44 6.37 -38.90 -0.25 -0.68 16 26 Cl -0.02 -0.24 27.39 -51.86 -1.42 -1.66 16 27 H 0.06 0.13 7.60 -51.93 -0.39 -0.26 16 28 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 29 H 0.07 0.27 5.67 -51.93 -0.29 -0.02 16 30 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.09 0.87 7.36 -51.93 -0.38 0.49 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.38 10.69 7.67 -40.82 -0.31 10.37 16 43 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.15 0.34 6.65 -52.49 -0.35 -0.01 16 45 H 0.17 0.24 8.06 -52.49 -0.42 -0.19 16 46 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -35.65 396.11 -9.71 -45.36 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.19 Total: 1.85 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.85 Total: -5.88 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.27 Total: -56.83 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: 0.08 Total: -6.79 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.42 Total: -1.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.65 -9.71 -45.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316723177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.765 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds