Wall clock time and date at job start Tue Mar 31 2020 22:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99795 * 2 1 4 4 C 1.53001 * 109.47052 * 269.99638 * 3 2 1 5 5 C 1.53007 * 109.47033 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46859 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46907 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47227 * 180.02562 * 7 6 5 9 9 N 1.46503 * 109.47202 * 180.02562 * 8 7 6 10 10 C 1.36936 * 119.99703 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00484 * 359.97438 * 10 9 8 12 12 C 1.38810 * 119.99940 * 179.97438 * 10 9 8 13 13 N 1.31626 * 119.99802 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00314 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46896 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47420 * 119.99927 * 14 12 10 17 17 H 1.48502 * 109.46942 * 239.99837 * 14 12 10 18 18 C 1.34781 * 120.00022 * 179.97438 * 2 1 3 19 19 O 1.21521 * 119.99647 * 184.48306 * 18 2 1 20 20 C 1.48070 * 120.00063 * 4.48480 * 18 2 1 21 21 C 1.39873 * 120.93289 * 311.08276 * 20 18 2 22 22 C 1.38083 * 119.01683 * 180.34431 * 21 20 18 23 23 N 1.31844 * 120.94155 * 359.65046 * 22 21 20 24 24 C 1.31755 * 122.07332 * 0.02957 * 23 22 21 25 25 C 1.38357 * 120.87190 * 0.02562 * 24 23 22 26 26 Cl 1.73601 * 120.52110 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.47236 * 273.01995 * 1 2 3 28 28 H 1.08992 * 109.47224 * 33.01728 * 1 2 3 29 29 H 1.09003 * 109.47256 * 153.02373 * 1 2 3 30 30 H 1.09001 * 109.47533 * 30.00164 * 3 2 1 31 31 H 1.09001 * 109.47261 * 149.99951 * 3 2 1 32 32 H 1.08994 * 109.47614 * 300.00342 * 4 3 2 33 33 H 1.09002 * 109.46917 * 60.00600 * 4 3 2 34 34 H 1.09000 * 109.46857 * 300.00377 * 5 4 3 35 35 H 1.09002 * 109.46746 * 60.00536 * 5 4 3 36 36 H 1.09001 * 109.47186 * 300.00435 * 6 5 4 37 37 H 1.09001 * 109.47201 * 59.99972 * 6 5 4 38 38 H 1.09001 * 109.47395 * 300.00113 * 7 6 5 39 39 H 1.09001 * 109.47372 * 59.99882 * 7 6 5 40 40 H 1.09007 * 109.46860 * 299.99776 * 8 7 6 41 41 H 1.09001 * 109.47199 * 59.99583 * 8 7 6 42 42 H 0.96997 * 119.99720 * 359.97438 * 9 8 7 43 43 H 0.96999 * 119.99963 * 179.97438 * 13 12 10 44 44 H 1.08000 * 120.48797 * 0.02562 * 21 20 18 45 45 H 1.08002 * 119.52855 * 179.67739 * 22 21 20 46 46 H 1.08003 * 119.56573 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2169 3.0358 -1.4425 6 6 3.4714 3.4777 -2.8850 7 6 4.2363 4.8027 -2.8850 8 6 4.4903 5.2450 -4.3275 9 7 5.2233 6.5135 -4.3275 10 6 5.5653 7.1066 -5.5135 11 1 5.2950 6.6391 -6.4488 12 6 6.2593 8.3087 -5.5135 13 7 6.5883 8.8787 -4.3736 14 14 6.7253 9.1182 -7.1313 15 1 6.2426 8.2826 -8.2599 16 1 6.1020 10.4639 -7.2091 17 1 8.2022 9.2514 -7.2108 18 6 2.1389 -1.1672 0.0005 19 8 3.3513 -1.1687 0.0828 20 6 1.4020 -2.4476 -0.0992 21 6 0.3011 -2.7095 0.7230 22 6 -0.3527 -3.9197 0.6016 23 7 0.0428 -4.8186 -0.2781 24 6 1.0702 -4.6114 -1.0765 25 6 1.7840 -3.4274 -1.0223 26 17 3.1366 -3.1643 -2.0782 27 1 -0.3634 0.0541 1.0263 28 1 -0.3633 0.8616 -0.5599 29 1 -0.3634 -0.9159 -0.4662 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 3.0415 0.9508 -1.9564 33 1 1.5000 1.8407 -1.9563 34 1 2.6274 3.7952 -0.9288 35 1 4.1693 2.9058 -0.9286 36 1 4.0606 2.7183 -3.3991 37 1 2.5188 3.6076 -3.3986 38 1 3.6474 5.5623 -2.3708 39 1 5.1889 4.6724 -2.3715 40 1 5.0791 4.4856 -4.8421 41 1 3.5375 5.3755 -4.8407 42 1 5.4663 6.9331 -3.4875 43 1 7.0736 9.7186 -4.3736 44 1 -0.0294 -1.9782 1.4457 45 1 -1.2005 -4.1327 1.2359 46 1 1.3595 -5.3762 -1.7820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316723177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:11 Heat of formation + Delta-G solvation = -28.041534 kcal Electronic energy + Delta-G solvation = -25580.152236 eV Core-core repulsion = 21722.735643 eV Total energy + Delta-G solvation = -3857.416593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90885 -40.35624 -37.96662 -37.74674 -37.04558 -35.84369 -34.24350 -33.39727 -32.22380 -31.63522 -28.78730 -27.78857 -26.41674 -25.17773 -24.65508 -23.70722 -22.21799 -21.93963 -20.91922 -19.14076 -18.82578 -18.11981 -17.61754 -17.20893 -16.83004 -16.69056 -16.41192 -16.15978 -15.44715 -15.40835 -15.32086 -15.20305 -15.12587 -14.63371 -14.26651 -13.90862 -13.82886 -13.54872 -13.37263 -13.15967 -13.08585 -13.00931 -12.88414 -12.55233 -12.47220 -12.33455 -12.14592 -12.03485 -11.84389 -11.73375 -11.59236 -11.42395 -11.37740 -10.96945 -10.94760 -10.59768 -10.11649 -9.77330 -9.03917 -7.98468 -5.28257 -0.47849 -0.21038 0.87672 1.41739 1.45227 1.46895 1.57227 1.83038 2.50365 2.53786 3.13705 3.34464 3.34789 3.53310 3.66663 3.71227 3.93479 4.04857 4.05320 4.15974 4.18905 4.30530 4.34856 4.41589 4.49539 4.54598 4.63286 4.63798 4.72681 4.74063 4.85695 4.87320 4.89250 4.96457 5.02316 5.13269 5.24335 5.30873 5.33213 5.43164 5.46860 5.49729 5.53095 6.16224 6.24399 6.66287 6.89852 7.29757 8.05966 8.29882 9.25475 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023294 B = 0.001581 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.728987 B =17709.543671 C =18383.885726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.602 5.602 3 C 0.115 3.885 4 C -0.124 4.124 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.114 4.114 8 C 0.148 3.852 9 N -0.750 5.750 10 C -0.252 4.252 11 H 0.075 0.925 12 C -0.078 4.078 13 N -0.970 5.970 14 Si 0.978 3.022 15 H -0.266 1.266 16 H -0.289 1.289 17 H -0.291 1.291 18 C 0.550 3.450 19 O -0.554 6.554 20 C -0.089 4.089 21 C -0.119 4.119 22 C 0.108 3.892 23 N -0.474 5.474 24 C 0.113 3.887 25 C -0.070 4.070 26 Cl -0.050 7.050 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.013 0.987 41 H 0.021 0.979 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.182 0.818 45 H 0.208 0.792 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.972 -29.414 15.056 39.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.333 5.333 3 C -0.007 4.007 4 C -0.162 4.162 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.152 4.152 8 C 0.021 3.979 9 N -0.393 5.393 10 C -0.383 4.383 11 H 0.093 0.907 12 C -0.270 4.270 13 N -0.621 5.621 14 Si 0.807 3.193 15 H -0.191 1.191 16 H -0.216 1.216 17 H -0.218 1.218 18 C 0.337 3.663 19 O -0.432 6.432 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.048 4.048 23 N -0.183 5.183 24 C -0.044 4.044 25 C -0.100 4.100 26 Cl -0.021 7.021 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.039 0.961 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.199 0.801 45 H 0.225 0.775 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -21.685 -30.156 14.759 39.969 hybrid contribution 1.570 1.628 -0.789 2.395 sum -20.115 -28.528 13.970 37.599 Atomic orbital electron populations 1.22367 0.76700 1.04718 1.04280 1.47877 1.08788 1.05024 1.71631 1.21621 0.97841 0.84098 0.97128 1.21831 1.00833 0.96655 0.96919 1.21439 1.00449 0.96633 0.96167 1.21420 1.00090 0.95205 0.97608 1.21614 1.00244 0.97888 0.95423 1.20868 0.93860 0.86642 0.96483 1.42648 1.67538 1.23737 1.05330 1.19726 1.28623 1.02711 0.87276 0.90740 1.25649 1.01930 0.98895 1.00495 1.69835 1.46218 1.19916 1.26106 0.85005 0.77194 0.78035 0.79102 1.19078 1.21612 1.21844 1.18434 0.86747 0.84273 0.76861 1.90836 1.14929 1.87385 1.50091 1.20350 0.97461 0.94501 0.97768 1.22802 0.92382 1.00162 0.98604 1.23564 0.99132 0.87922 0.94191 1.67801 1.12596 1.33135 1.04763 1.23062 0.90238 0.93882 0.97264 1.22367 0.93819 0.97316 0.96510 1.98435 1.43349 1.96477 1.63875 0.89103 0.89217 0.90315 0.87040 0.91421 0.94086 0.90502 0.90239 0.92546 0.92821 0.91174 0.91931 0.92931 0.96898 0.96149 0.79471 0.93873 0.80059 0.77504 0.79852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 9.12 127.77 1.17 1.45 16 2 N -0.60 -8.21 2.87 -849.95 -2.44 -10.65 16 3 C 0.12 1.72 5.46 86.38 0.47 2.19 16 4 C -0.12 -2.20 5.54 30.60 0.17 -2.03 16 5 C -0.11 -2.20 5.21 30.60 0.16 -2.04 16 6 C -0.11 -2.68 5.21 30.59 0.16 -2.52 16 7 C -0.11 -3.79 5.33 30.59 0.16 -3.63 16 8 C 0.15 6.30 6.26 86.38 0.54 6.84 16 9 N -0.75 -40.60 5.60 -343.44 -1.92 -42.52 16 10 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 11 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 12 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 13 N -0.97 -61.08 13.06 21.65 0.28 -60.80 16 14 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 17 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 18 C 0.55 10.80 6.83 86.85 0.59 11.39 16 19 O -0.55 -15.89 15.55 -3.78 -0.06 -15.95 16 20 C -0.09 -1.34 4.92 -19.86 -0.10 -1.43 16 21 C -0.12 -0.81 7.73 22.63 0.17 -0.63 16 22 C 0.11 0.65 11.17 84.65 0.95 1.60 16 23 N -0.47 -5.60 10.33 -195.91 -2.02 -7.63 16 24 C 0.11 1.48 10.99 84.73 0.93 2.41 16 25 C -0.07 -1.17 6.37 22.71 0.14 -1.03 16 26 Cl -0.05 -1.05 27.39 -2.72 -0.07 -1.13 16 27 H 0.09 -0.04 7.60 -2.39 -0.02 -0.05 16 28 H 0.09 0.28 8.09 -2.39 -0.02 0.26 16 29 H 0.08 0.33 5.67 -2.39 -0.01 0.31 16 30 H 0.11 1.02 8.07 -2.39 -0.02 1.00 16 31 H 0.07 1.33 7.36 -2.39 -0.02 1.31 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.01 0.56 8.14 -2.38 -0.02 0.55 16 41 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.37 21.26 7.67 -92.71 -0.71 20.55 16 43 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.18 0.04 6.65 -2.91 -0.02 0.02 16 45 H 0.21 -0.39 8.06 -2.91 -0.02 -0.42 16 46 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -79.27 396.11 2.88 -76.39 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.27 Total: 18.47 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 6.83 Total: -5.52 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.11 Total: -121.60 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.06 Total: -15.95 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.13 kcal Total: -79.27 2.88 -76.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316723177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.346 kcal (2) G-P(sol) polarization free energy of solvation -79.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds