Wall clock time and date at job start Tue Mar 31 2020 23:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47060 * 240.00291 * 3 2 1 5 5 H 1.48503 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46852 * 120.00283 * 3 2 1 7 7 C 1.38809 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99682 * 196.88391 * 7 2 1 9 9 N 1.36936 * 119.99955 * 17.16531 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57103 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.52998 * 109.47355 * 294.30335 * 13 12 11 15 15 N 1.46504 * 109.47177 * 180.02562 * 14 13 12 16 16 C 1.34773 * 119.99892 * 180.02562 * 15 14 13 17 17 O 1.21584 * 120.00433 * 359.97438 * 16 15 14 18 18 C 1.47543 * 119.99663 * 179.97438 * 16 15 14 19 19 C 1.39905 * 120.19052 * 89.72264 * 18 16 15 20 20 F 1.35105 * 120.09417 * 359.97438 * 19 18 16 21 21 C 1.38222 * 119.80848 * 179.79010 * 19 18 16 22 22 C 1.38305 * 120.18859 * 0.48835 * 21 19 18 23 23 C 1.38309 * 120.38249 * 359.73907 * 22 21 19 24 24 C 1.38214 * 120.19129 * 0.02684 * 23 22 21 25 25 F 1.35105 * 120.09804 * 179.97438 * 24 23 22 26 26 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 27 27 C 1.47086 * 120.87786 * 206.85385 * 9 7 2 28 28 H 0.97001 * 119.99713 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 30 30 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 31 31 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 32 32 H 1.08999 * 109.42005 * 173.94504 * 11 10 9 33 33 H 1.08998 * 109.46930 * 54.30855 * 13 12 11 34 34 H 1.09005 * 109.46997 * 174.30484 * 13 12 11 35 35 H 1.08998 * 109.46978 * 299.99622 * 14 13 12 36 36 H 1.08995 * 109.47116 * 60.00155 * 14 13 12 37 37 H 0.96996 * 119.99621 * 359.97438 * 15 14 13 38 38 H 1.08000 * 119.90652 * 180.25270 * 21 19 18 39 39 H 1.07996 * 119.81004 * 179.76936 * 22 21 19 40 40 H 1.08001 * 119.89957 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.49046 * 303.14169 * 26 12 11 42 42 H 1.08998 * 109.52013 * 183.07630 * 26 12 11 43 43 H 1.08998 * 109.62919 * 350.89226 * 27 9 7 44 44 H 1.09001 * 109.62891 * 111.47641 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3615 -0.3511 10 6 0.2074 -2.3399 -1.2501 11 6 0.4529 -3.3518 -2.3805 12 7 0.7625 -4.6641 -1.7975 13 6 0.8316 -5.6992 -2.8376 14 6 -0.5522 -5.8874 -3.4626 15 7 -0.4833 -6.9202 -4.4995 16 6 -1.5906 -7.2562 -5.1904 17 8 -2.6468 -6.7028 -4.9529 18 6 -1.5211 -8.2959 -6.2350 19 6 -1.7401 -9.6383 -5.9072 20 9 -2.0158 -9.9879 -4.6317 21 6 -1.6773 -10.6053 -6.8929 22 6 -1.3890 -10.2502 -8.1981 23 6 -1.1665 -8.9261 -8.5300 24 6 -1.2301 -7.9457 -7.5579 25 9 -1.0119 -6.6529 -7.8841 26 6 2.0049 -4.6199 -1.0152 27 6 1.8269 -3.6607 0.1665 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6890 -2.6166 -0.6951 30 1 0.0877 -1.3413 -1.6702 31 1 1.2903 -3.0197 -2.9942 32 1 -0.4422 -3.4300 -2.9976 33 1 1.5397 -5.3935 -3.6078 34 1 1.1607 -6.6388 -2.3938 35 1 -1.2602 -6.1932 -2.6923 36 1 -0.8813 -4.9479 -3.9064 37 1 0.3594 -7.3614 -4.6891 38 1 -1.8501 -11.6415 -6.6424 39 1 -1.3378 -11.0112 -8.9627 40 1 -0.9424 -8.6575 -9.5518 41 1 2.8208 -4.2702 -1.6478 42 1 2.2361 -5.6176 -0.6421 43 1 2.7785 -3.5357 0.6832 44 1 1.0831 -4.0619 0.8549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316973214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:40 Heat of formation + Delta-G solvation = -59.269032 kcal Electronic energy + Delta-G solvation = -28815.190118 eV Core-core repulsion = 24404.622719 eV Total energy + Delta-G solvation = -4410.567399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.53121 -49.50911 -40.21301 -38.81342 -38.13804 -35.48490 -34.01317 -32.11106 -31.30857 -30.96699 -29.91171 -28.85153 -26.08885 -24.54211 -23.41685 -23.22407 -22.57235 -21.39591 -21.05721 -19.12635 -18.81948 -18.03578 -17.83262 -16.90550 -16.66861 -16.18087 -16.06637 -15.79863 -15.78188 -15.46201 -14.96008 -14.90978 -14.46249 -14.42521 -14.13372 -13.60719 -13.51520 -13.42683 -13.32566 -12.94257 -12.60844 -12.59531 -12.46223 -12.37917 -11.67102 -11.43484 -11.32430 -11.04706 -10.72068 -10.50449 -10.37978 -10.27601 -10.05467 -9.74342 -9.65840 -9.62628 -9.38041 -9.21678 -8.48992 -7.89600 -6.65513 -5.76304 -3.17984 0.18511 0.35755 2.18432 2.62030 2.81907 3.20911 3.39544 3.45476 3.46408 3.77410 3.99806 4.19997 4.23365 4.45027 4.49123 4.52518 4.91968 5.05771 5.13063 5.15205 5.28365 5.36186 5.40891 5.42933 5.49656 5.51066 5.81092 5.90620 5.92132 6.01245 6.06665 6.10373 6.17950 6.24859 6.32985 6.54239 6.68305 6.93002 7.15183 7.24743 7.53182 7.64114 7.70167 7.82146 7.86200 8.45221 9.22621 9.86024 10.44738 11.32423 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023193 B = 0.002095 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.995892 B =13361.491030 C =13860.075623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.178 3.822 11 C 0.030 3.970 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.119 3.881 15 N -0.714 5.714 16 C 0.564 3.436 17 O -0.514 6.514 18 C -0.198 4.198 19 C 0.164 3.836 20 F -0.119 7.119 21 C -0.166 4.166 22 C -0.046 4.046 23 C -0.165 4.165 24 C 0.164 3.836 25 F -0.119 7.119 26 C 0.046 3.954 27 C 0.148 3.852 28 H 0.255 0.745 29 H 0.028 0.972 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.401 0.599 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.028 0.972 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 -24.307 -18.204 30.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.099 4.099 12 N -0.254 5.254 13 C -0.084 4.084 14 C -0.004 4.004 15 N -0.365 5.365 16 C 0.347 3.653 17 O -0.388 6.388 18 C -0.203 4.203 19 C 0.144 3.856 20 F -0.098 7.098 21 C -0.184 4.184 22 C -0.064 4.064 23 C -0.184 4.184 24 C 0.144 3.856 25 F -0.097 7.097 26 C -0.083 4.083 27 C 0.022 3.978 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.107 0.893 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.235 0.765 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.416 -23.774 -17.606 29.618 hybrid contribution 1.459 1.017 -0.509 1.849 sum 0.043 -22.758 -18.115 29.087 Atomic orbital electron populations 1.70021 1.05194 1.25639 1.53833 1.25041 0.95318 0.98380 1.01002 0.86362 0.78887 0.83411 0.78056 1.21134 1.21600 1.20894 1.19135 0.92526 0.84838 1.41809 0.91711 1.44146 1.34429 1.01276 1.52056 1.20962 0.89003 0.96543 0.88274 1.23098 0.98840 0.89184 0.98779 1.61866 1.35076 1.05738 1.22731 1.22188 0.94781 0.97080 0.94330 1.21493 0.98570 0.90723 0.89591 1.45914 1.11233 1.41055 1.38271 1.17681 0.84487 0.82071 0.81053 1.90873 1.28944 1.52820 1.66205 1.19995 1.11457 0.94134 0.94744 1.17333 0.97711 0.90715 0.79861 1.91601 1.90371 1.92232 1.35547 1.21209 1.04656 1.00083 0.92500 1.21023 0.93974 0.95621 0.95748 1.21214 1.04819 0.92406 0.99999 1.17343 0.97755 0.79338 0.91183 1.91606 1.91408 1.33945 1.92776 1.22628 0.89297 0.99536 0.96829 1.20980 0.97870 0.86497 0.92498 0.93515 0.95366 0.89294 0.95512 0.91804 0.94882 0.90758 0.89990 0.90643 0.76542 0.83212 0.83278 0.83210 0.95334 0.91957 0.92528 0.95579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 11.16 55.49 0.62 -25.99 16 2 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 3 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -7.05 9.63 -15.06 -0.15 -7.19 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.60 -15.29 3.03 -171.73 -0.52 -15.81 16 10 C 0.18 4.39 5.45 -3.36 -0.02 4.37 16 11 C 0.03 0.59 5.48 -3.47 -0.02 0.58 16 12 N -0.53 -9.33 4.63 -234.04 -1.08 -10.41 16 13 C 0.05 0.61 5.08 -3.83 -0.02 0.59 16 14 C 0.12 1.65 5.61 -4.04 -0.02 1.63 16 15 N -0.71 -8.43 5.55 -61.35 -0.34 -8.77 16 16 C 0.56 7.77 6.54 -12.47 -0.08 7.69 16 17 O -0.51 -9.28 17.11 5.29 0.09 -9.19 16 18 C -0.20 -2.09 5.64 -104.86 -0.59 -2.68 16 19 C 0.16 1.45 7.29 -38.96 -0.28 1.17 16 20 F -0.12 -1.26 16.83 2.25 0.04 -1.22 16 21 C -0.17 -0.88 10.01 -39.56 -0.40 -1.28 16 22 C -0.05 -0.17 10.03 -39.53 -0.40 -0.57 16 23 C -0.17 -0.91 10.01 -39.56 -0.40 -1.30 16 24 C 0.16 1.48 7.29 -38.97 -0.28 1.20 16 25 F -0.12 -1.31 16.83 2.25 0.04 -1.27 16 26 C 0.05 0.82 5.62 -3.71 -0.02 0.80 16 27 C 0.15 3.17 6.69 -3.60 -0.02 3.14 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 2.42 6.12 -51.93 -0.32 2.10 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.18 6.16 -51.93 -0.32 0.86 16 33 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.07 0.88 7.97 -51.93 -0.41 0.46 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.17 6.40 -51.93 -0.33 0.84 16 37 H 0.40 3.52 8.46 -40.82 -0.35 3.18 16 38 H 0.15 0.45 8.06 -52.49 -0.42 0.02 16 39 H 0.15 0.08 8.06 -52.49 -0.42 -0.35 16 40 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.93 7.99 -51.93 -0.41 0.51 16 43 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -34.04 371.59 -9.28 -43.33 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.91 Total: -1.24 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -2.78 Total: 8.09 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -1.32 Total: -60.99 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.08 Total: -2.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.04 -9.28 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316973214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.941 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds