Wall clock time and date at job start Tue Mar 31 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28593 * 124.62251 * 2 1 4 4 C 1.31378 * 108.72496 * 179.97438 * 3 2 1 5 5 C 1.39677 * 105.89656 * 359.97438 * 4 3 2 6 6 C 1.50701 * 127.04859 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.46871 * 95.00473 * 6 5 4 8 8 C 1.48559 * 110.99539 * 284.42736 * 7 6 5 9 9 C 1.54390 * 104.58971 * 200.96073 * 8 7 6 10 10 C 1.54253 * 105.06025 * 23.85169 * 9 8 7 11 11 C 1.48553 * 110.99922 * 169.00729 * 7 6 5 12 12 H 1.09005 * 110.41386 * 40.26156 * 11 7 6 13 13 C 1.53001 * 110.41572 * 277.81889 * 11 7 6 14 14 N 1.46503 * 109.47173 * 179.32324 * 13 11 7 15 15 C 1.34779 * 119.99500 * 184.83429 * 14 13 11 16 16 O 1.21277 * 120.00252 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99662 * 179.97438 * 15 14 13 18 18 S 1.80993 * 109.46914 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99962 * 180.02562 * 18 17 15 20 20 H 1.08005 * 120.00271 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00501 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00280 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99383 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47343 * 90.00230 * 23 21 19 25 25 H 1.48500 * 109.47354 * 210.00087 * 23 21 19 26 26 H 1.48504 * 109.47620 * 329.99897 * 23 21 19 27 27 N 1.28602 * 124.61795 * 180.25186 * 2 1 3 28 28 H 1.09002 * 109.47357 * 90.02357 * 1 2 3 29 29 H 1.09005 * 109.47154 * 210.02748 * 1 2 3 30 30 H 1.09004 * 109.47061 * 330.02469 * 1 2 3 31 31 H 1.07999 * 127.05233 * 180.02562 * 4 3 2 32 32 H 1.08990 * 109.47539 * 335.00511 * 6 5 4 33 33 H 1.08998 * 109.46836 * 214.99863 * 6 5 4 34 34 H 1.09004 * 110.41176 * 82.18413 * 8 7 6 35 35 H 1.08990 * 110.51620 * 319.78622 * 8 7 6 36 36 H 1.08999 * 110.31943 * 264.95514 * 9 8 7 37 37 H 1.08995 * 110.32091 * 142.75240 * 9 8 7 38 38 H 1.09001 * 110.32468 * 118.89855 * 10 9 8 39 39 H 1.09000 * 110.32670 * 241.10212 * 10 9 8 40 40 H 1.09004 * 109.46923 * 299.32135 * 13 11 7 41 41 H 1.09000 * 109.46928 * 59.31812 * 13 11 7 42 42 H 0.96995 * 120.00181 * 4.83181 * 14 13 11 43 43 H 1.08998 * 109.47231 * 299.99885 * 17 15 14 44 44 H 1.09006 * 109.46791 * 60.00146 * 17 15 14 45 45 H 0.97000 * 120.00190 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1956 1.0582 0.0000 4 6 3.4591 0.6983 0.0006 5 6 3.4591 -0.6984 0.0015 6 6 4.6618 -1.6064 0.0019 7 7 4.9801 -1.9969 1.3819 8 6 5.6356 -0.8820 2.1129 9 6 6.3731 -1.5655 3.2844 10 6 6.6029 -3.0185 2.8202 11 6 5.9849 -3.0908 1.4073 12 1 6.7495 -2.9224 0.6489 13 6 5.3057 -4.4445 1.1906 14 7 6.3160 -5.5054 1.2034 15 6 5.9609 -6.7773 0.9338 16 8 4.8052 -7.0435 0.6801 17 6 7.0002 -7.8685 0.9464 18 16 6.2176 -9.4516 0.5497 19 6 7.6197 -10.5154 0.6332 20 1 8.5915 -10.1103 0.8743 21 6 7.4758 -11.8740 0.3880 22 7 8.5231 -12.6688 0.4509 23 14 5.7953 -12.5746 -0.0297 24 1 5.5968 -12.5410 -1.5010 25 1 5.7110 -13.9778 0.4491 26 1 4.7421 -11.7622 0.6306 27 7 2.1955 -1.0583 -0.0047 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.3210 1.3491 0.0011 32 1 5.5129 -1.0824 -0.4328 33 1 4.4444 -2.4976 -0.5869 34 1 4.8886 -0.1833 2.4898 35 1 6.3452 -0.3662 1.4661 36 1 5.7554 -1.5480 4.1823 37 1 7.3270 -1.0721 3.4705 38 1 7.6697 -3.2384 2.7785 39 1 6.0981 -3.7143 3.4903 40 1 4.5838 -4.6206 1.9882 41 1 4.7919 -4.4435 0.2293 42 1 7.2403 -5.2924 1.4059 43 1 7.7686 -7.6470 0.2057 44 1 7.4547 -7.9260 1.9355 45 1 8.4226 -13.6182 0.2792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317494745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:09 Heat of formation + Delta-G solvation = 81.440615 kcal Electronic energy + Delta-G solvation = -26148.910386 eV Core-core repulsion = 22330.577753 eV Total energy + Delta-G solvation = -3818.332633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.83652 -39.91394 -38.80930 -34.97916 -34.31378 -33.07784 -32.42264 -32.02705 -30.78904 -28.80477 -28.37601 -25.98608 -25.61339 -24.73970 -22.61182 -21.98867 -20.82548 -20.59424 -20.21809 -17.89213 -17.61334 -17.19075 -16.54967 -16.46675 -16.05327 -15.39316 -15.20096 -15.11260 -14.95076 -14.67394 -14.25175 -13.96361 -13.74293 -13.52451 -13.38116 -13.21715 -13.00444 -12.77995 -12.65296 -12.30575 -12.15892 -11.81911 -11.62772 -11.32525 -11.24479 -11.12466 -11.05263 -10.98886 -10.83396 -10.57985 -10.54299 -9.84016 -9.55586 -9.48743 -8.99647 -8.91722 -8.90311 -8.47472 -6.89552 -6.27370 -3.98740 1.51766 1.99679 2.06232 2.77205 3.02796 3.24622 3.34965 3.52646 3.57664 3.72088 3.91073 4.22155 4.28999 4.35078 4.44297 4.58657 4.60764 4.69061 4.77167 4.79762 4.83535 4.87467 4.95905 5.00393 5.11342 5.11843 5.26151 5.28941 5.37331 5.45200 5.58713 5.69373 5.72666 5.79287 5.81222 5.83435 5.88930 5.91666 6.03618 6.36664 6.42989 6.52157 6.65397 7.64610 7.95673 8.03917 8.43089 8.54047 9.18968 10.81795 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002034 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.395588 B =13760.535526 C =15008.359047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.160 5.160 3 N -0.293 5.293 4 C -0.023 4.023 5 C 0.013 3.987 6 C 0.130 3.870 7 N -0.497 5.497 8 C 0.035 3.965 9 C -0.123 4.123 10 C -0.122 4.122 11 C 0.054 3.946 12 H 0.063 0.937 13 C 0.136 3.864 14 N -0.736 5.736 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.123 4.123 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 N -0.266 5.266 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.193 0.807 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.398 0.602 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 31.415 2.208 32.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.061 5.061 3 N -0.134 5.134 4 C -0.205 4.205 5 C -0.150 4.150 6 C 0.000 4.000 7 N -0.222 5.222 8 C -0.093 4.093 9 C -0.162 4.162 10 C -0.160 4.160 11 C -0.055 4.055 12 H 0.081 0.919 13 C 0.012 3.988 14 N -0.391 5.391 15 C 0.316 3.684 16 O -0.392 6.392 17 C -0.274 4.274 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 N -0.109 5.109 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.210 0.790 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.232 0.768 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.463 30.644 1.998 32.779 hybrid contribution 2.874 0.261 -0.264 2.898 sum -8.590 30.905 1.733 32.123 Atomic orbital electron populations 1.22130 0.70214 1.05909 1.04942 1.47946 1.08930 0.99363 1.49814 1.74019 1.03892 1.16292 1.19212 1.24594 0.94458 0.94676 1.06819 1.22848 0.92445 0.93495 1.06229 1.20425 0.91373 0.97560 0.90640 1.65130 1.38080 1.06033 1.12932 1.23147 0.96963 0.93689 0.95486 1.22282 1.00219 0.95327 0.98331 1.22398 1.00828 0.97422 0.95400 1.22823 0.92910 0.91788 0.97939 0.91910 1.21099 0.90752 0.84079 1.02878 1.45878 1.11990 1.07271 1.73962 1.20247 0.89655 0.82657 0.75799 1.90711 1.19878 1.82078 1.46517 1.23275 1.00637 0.97758 1.05748 1.84808 1.16417 0.97931 1.92407 1.22323 0.94589 0.94624 1.55314 0.89395 1.24717 0.97247 0.95846 0.93553 1.69936 1.29456 1.05040 1.47294 0.86733 0.85088 0.79708 0.80313 1.19230 1.19977 1.15884 1.74100 1.03619 1.15209 1.17943 0.89283 0.87767 0.88009 0.78975 0.91826 0.88610 0.90160 0.93366 0.90941 0.91146 0.90842 0.90263 0.90807 0.91355 0.76838 0.88545 0.88469 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.53 11.57 59.84 0.69 1.23 16 2 N -0.16 -1.55 4.35 -16.64 -0.07 -1.62 16 3 N -0.29 -2.94 12.05 30.67 0.37 -2.57 16 4 C -0.02 -0.19 12.16 -17.21 -0.21 -0.40 16 5 C 0.01 0.13 6.55 -82.25 -0.54 -0.41 16 6 C 0.13 1.07 5.38 -4.97 -0.03 1.05 16 7 N -0.50 -4.28 5.00 -223.57 -1.12 -5.40 16 8 C 0.03 0.23 6.14 -2.18 -0.01 0.22 16 9 C -0.12 -0.78 7.00 -25.35 -0.18 -0.96 16 10 C -0.12 -0.88 6.11 -25.35 -0.15 -1.04 16 11 C 0.05 0.45 2.37 -66.07 -0.16 0.29 16 12 H 0.06 0.46 8.00 -51.93 -0.42 0.04 16 13 C 0.14 1.58 5.22 -4.04 -0.02 1.56 16 14 N -0.74 -9.17 5.40 -60.29 -0.33 -9.50 16 15 C 0.53 9.42 7.85 -10.98 -0.09 9.34 16 16 O -0.52 -11.37 15.86 5.56 0.09 -11.28 16 17 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 18 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 19 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 20 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 21 C 0.09 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 23 Si 0.86 21.91 27.74 -169.99 -4.71 17.20 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 27 N -0.27 -3.06 12.05 33.72 0.41 -2.66 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.19 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.06 0.38 7.75 -51.93 -0.40 -0.02 16 33 H 0.10 0.88 7.13 -51.93 -0.37 0.51 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.26 7.74 -51.93 -0.40 -0.14 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.67 7.81 -51.93 -0.41 0.27 16 40 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 41 H 0.07 0.89 7.25 -51.93 -0.38 0.51 16 42 H 0.40 3.74 8.21 -40.82 -0.34 3.40 16 43 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.10 1.73 8.14 -51.91 -0.42 1.30 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -37.40 387.61 -7.93 -45.33 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.93 Total: -0.60 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.26 Total: -3.31 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.03 Total: -47.58 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.40 -7.93 -45.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317494745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.775 kcal (2) G-P(sol) polarization free energy of solvation -37.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds