Wall clock time and date at job start Tue Mar 31 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28593 * 124.62251 * 2 1 4 4 C 1.31378 * 108.72496 * 179.97438 * 3 2 1 5 5 C 1.39677 * 105.89656 * 359.97438 * 4 3 2 6 6 C 1.50701 * 127.04859 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.46871 * 95.00473 * 6 5 4 8 8 C 1.48559 * 110.99539 * 284.42736 * 7 6 5 9 9 C 1.54390 * 104.58971 * 200.96073 * 8 7 6 10 10 C 1.54253 * 105.06025 * 23.85169 * 9 8 7 11 11 C 1.48553 * 110.99922 * 169.00729 * 7 6 5 12 12 H 1.09005 * 110.41386 * 40.26156 * 11 7 6 13 13 C 1.53001 * 110.41572 * 277.81889 * 11 7 6 14 14 N 1.46503 * 109.47173 * 179.32324 * 13 11 7 15 15 C 1.34779 * 119.99500 * 184.83429 * 14 13 11 16 16 O 1.21277 * 120.00252 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99662 * 179.97438 * 15 14 13 18 18 S 1.80993 * 109.46914 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99962 * 180.02562 * 18 17 15 20 20 H 1.08005 * 120.00271 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00501 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00280 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99383 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47343 * 90.00230 * 23 21 19 25 25 H 1.48500 * 109.47354 * 210.00087 * 23 21 19 26 26 H 1.48504 * 109.47620 * 329.99897 * 23 21 19 27 27 N 1.28602 * 124.61795 * 180.25186 * 2 1 3 28 28 H 1.09002 * 109.47357 * 90.02357 * 1 2 3 29 29 H 1.09005 * 109.47154 * 210.02748 * 1 2 3 30 30 H 1.09004 * 109.47061 * 330.02469 * 1 2 3 31 31 H 1.07999 * 127.05233 * 180.02562 * 4 3 2 32 32 H 1.08990 * 109.47539 * 335.00511 * 6 5 4 33 33 H 1.08998 * 109.46836 * 214.99863 * 6 5 4 34 34 H 1.09004 * 110.41176 * 82.18413 * 8 7 6 35 35 H 1.08990 * 110.51620 * 319.78622 * 8 7 6 36 36 H 1.08999 * 110.31943 * 264.95514 * 9 8 7 37 37 H 1.08995 * 110.32091 * 142.75240 * 9 8 7 38 38 H 1.09001 * 110.32468 * 118.89855 * 10 9 8 39 39 H 1.09000 * 110.32670 * 241.10212 * 10 9 8 40 40 H 1.09004 * 109.46923 * 299.32135 * 13 11 7 41 41 H 1.09000 * 109.46928 * 59.31812 * 13 11 7 42 42 H 0.96995 * 120.00181 * 4.83181 * 14 13 11 43 43 H 1.08998 * 109.47231 * 299.99885 * 17 15 14 44 44 H 1.09006 * 109.46791 * 60.00146 * 17 15 14 45 45 H 0.97000 * 120.00190 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1956 1.0582 0.0000 4 6 3.4591 0.6983 0.0006 5 6 3.4591 -0.6984 0.0015 6 6 4.6618 -1.6064 0.0019 7 7 4.9801 -1.9969 1.3819 8 6 5.6356 -0.8820 2.1129 9 6 6.3731 -1.5655 3.2844 10 6 6.6029 -3.0185 2.8202 11 6 5.9849 -3.0908 1.4073 12 1 6.7495 -2.9224 0.6489 13 6 5.3057 -4.4445 1.1906 14 7 6.3160 -5.5054 1.2034 15 6 5.9609 -6.7773 0.9338 16 8 4.8052 -7.0435 0.6801 17 6 7.0002 -7.8685 0.9464 18 16 6.2176 -9.4516 0.5497 19 6 7.6197 -10.5154 0.6332 20 1 8.5915 -10.1103 0.8743 21 6 7.4758 -11.8740 0.3880 22 7 8.5231 -12.6688 0.4509 23 14 5.7953 -12.5746 -0.0297 24 1 5.5968 -12.5410 -1.5010 25 1 5.7110 -13.9778 0.4491 26 1 4.7421 -11.7622 0.6306 27 7 2.1955 -1.0583 -0.0047 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.3210 1.3491 0.0011 32 1 5.5129 -1.0824 -0.4328 33 1 4.4444 -2.4976 -0.5869 34 1 4.8886 -0.1833 2.4898 35 1 6.3452 -0.3662 1.4661 36 1 5.7554 -1.5480 4.1823 37 1 7.3270 -1.0721 3.4705 38 1 7.6697 -3.2384 2.7785 39 1 6.0981 -3.7143 3.4903 40 1 4.5838 -4.6206 1.9882 41 1 4.7919 -4.4435 0.2293 42 1 7.2403 -5.2924 1.4059 43 1 7.7686 -7.6470 0.2057 44 1 7.4547 -7.9260 1.9355 45 1 8.4226 -13.6182 0.2792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317494745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:09 Heat of formation + Delta-G solvation = 52.050054 kcal Electronic energy + Delta-G solvation = -26150.184857 eV Core-core repulsion = 22330.577753 eV Total energy + Delta-G solvation = -3819.607104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.49934 -40.89906 -39.87428 -35.96376 -35.11867 -34.65782 -33.71386 -32.63525 -31.97202 -29.92445 -28.93632 -27.84609 -26.58567 -25.62065 -23.24584 -22.62717 -21.87135 -21.31206 -21.11976 -19.86823 -18.22702 -17.97530 -17.75838 -17.48864 -17.08973 -16.90861 -16.50231 -16.07030 -15.90285 -15.64765 -15.28684 -14.97739 -14.89304 -14.74404 -14.55284 -13.96619 -13.93349 -13.66382 -13.43536 -13.33170 -13.23489 -13.01090 -12.93638 -12.68157 -12.60007 -12.16198 -12.01103 -11.85766 -11.80261 -11.76203 -11.35752 -11.27494 -11.16093 -11.01751 -10.51242 -10.17297 -10.12494 -9.48022 -8.98175 -8.50409 -6.20759 0.83023 1.00009 1.31899 1.38385 1.48176 1.52323 1.56961 1.58919 2.18802 2.26460 2.72486 2.87797 3.09725 3.18929 3.61604 3.64171 3.82940 3.94951 4.05510 4.14618 4.23842 4.27304 4.28279 4.28590 4.35846 4.44484 4.49459 4.50459 4.56388 4.66839 4.73346 4.81000 4.96016 5.01819 5.09650 5.14150 5.23240 5.25961 5.32129 5.38594 5.72153 5.76940 5.89683 6.00001 6.12915 6.49125 6.95071 7.22205 7.36708 8.61758 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002034 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.395588 B =13760.535526 C =15008.359047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.165 5.165 3 N -0.311 5.311 4 C -0.020 4.020 5 C 0.004 3.996 6 C 0.132 3.868 7 N -0.518 5.518 8 C 0.038 3.962 9 C -0.120 4.120 10 C -0.122 4.122 11 C 0.064 3.936 12 H 0.084 0.916 13 C 0.141 3.859 14 N -0.707 5.707 15 C 0.535 3.465 16 O -0.565 6.565 17 C -0.109 4.109 18 S -0.180 6.180 19 C -0.526 4.526 20 H 0.064 0.936 21 C 0.045 3.955 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.238 1.238 27 N -0.304 5.304 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.418 0.582 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 33.642 2.310 34.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.067 5.067 3 N -0.153 5.153 4 C -0.202 4.202 5 C -0.159 4.159 6 C 0.003 3.997 7 N -0.243 5.243 8 C -0.089 4.089 9 C -0.158 4.158 10 C -0.160 4.160 11 C -0.045 4.045 12 H 0.102 0.898 13 C 0.016 3.984 14 N -0.361 5.361 15 C 0.320 3.680 16 O -0.444 6.444 17 C -0.260 4.260 18 S 0.046 5.954 19 C -0.674 4.674 20 H 0.083 0.917 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.162 1.162 27 N -0.147 5.147 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.241 0.759 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.255 0.745 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.764 32.916 2.118 34.696 hybrid contribution 2.696 -0.269 -0.254 2.721 sum -8.067 32.647 1.864 33.681 Atomic orbital electron populations 1.22474 0.68421 1.07051 1.06231 1.48356 1.10044 0.98835 1.49470 1.73993 1.04685 1.16713 1.19868 1.25106 0.94920 0.94580 1.05632 1.23166 0.92344 0.94371 1.05994 1.20456 0.91801 0.97000 0.90475 1.65041 1.38919 1.06938 1.13413 1.23162 0.97088 0.93000 0.95665 1.22276 1.00991 0.94770 0.97766 1.22413 1.01691 0.97751 0.94145 1.22716 0.92824 0.89591 0.99320 0.89847 1.21099 0.90435 0.85550 1.01274 1.45571 1.13324 1.05648 1.71567 1.19982 0.88428 0.83830 0.75747 1.90703 1.21515 1.82969 1.49176 1.23259 1.00936 0.94511 1.07294 1.84783 1.16259 1.01481 1.92863 1.22456 0.94787 0.95484 1.54677 0.91739 1.25548 1.00558 0.96347 0.93575 1.70009 1.31329 1.05672 1.48384 0.85881 0.80856 0.79531 0.80191 1.18757 1.18379 1.16203 1.74056 1.04838 1.16548 1.19297 0.87925 0.87309 0.86235 0.75915 0.89055 0.90247 0.90944 0.91144 0.91881 0.89148 0.88787 0.91962 0.92865 0.92903 0.74500 0.86555 0.86604 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.92 11.57 127.77 1.48 2.40 16 2 N -0.17 -3.16 4.35 -206.55 -0.90 -4.05 16 3 N -0.31 -5.95 12.05 -56.87 -0.69 -6.63 16 4 C -0.02 -0.31 12.16 85.11 1.03 0.72 16 5 C 0.00 0.08 6.55 42.97 0.28 0.36 16 6 C 0.13 1.98 5.38 85.56 0.46 2.44 16 7 N -0.52 -8.01 5.00 -861.23 -4.31 -12.32 16 8 C 0.04 0.41 6.14 86.45 0.53 0.94 16 9 C -0.12 -1.19 7.00 31.49 0.22 -0.97 16 10 C -0.12 -1.43 6.11 31.49 0.19 -1.23 16 11 C 0.06 0.91 2.37 45.06 0.11 1.01 16 12 H 0.08 0.89 8.00 -2.38 -0.02 0.87 16 13 C 0.14 3.13 5.22 86.38 0.45 3.58 16 14 N -0.71 -16.26 5.40 -463.04 -2.50 -18.77 16 15 C 0.53 18.39 7.85 87.66 0.69 19.08 16 16 O -0.57 -24.88 15.86 -3.02 -0.05 -24.92 16 17 C -0.11 -4.04 6.16 71.24 0.44 -3.60 16 18 S -0.18 -9.16 18.55 -56.49 -1.05 -10.20 16 19 C -0.53 -30.57 10.04 67.96 0.68 -29.89 16 20 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 21 C 0.05 2.65 5.50 84.86 0.47 3.12 16 22 N -0.92 -55.72 13.97 21.65 0.30 -55.41 16 23 Si 0.91 45.33 27.74 68.60 1.90 47.23 16 24 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 27 N -0.30 -7.00 12.05 -47.24 -0.57 -7.57 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.22 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.09 0.82 7.75 -2.39 -0.02 0.80 16 33 H 0.08 1.43 7.13 -2.39 -0.02 1.42 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 0.46 7.74 -2.39 -0.02 0.44 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.96 7.81 -2.39 -0.02 0.94 16 40 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 41 H 0.05 1.38 7.25 -2.39 -0.02 1.36 16 42 H 0.42 6.49 8.21 -92.71 -0.76 5.73 16 43 H 0.12 3.88 8.14 -2.40 -0.02 3.86 16 44 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 45 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -82.62 387.61 -0.62 -83.24 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.20 Total: 11.45 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 7.03 Total: -2.03 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -8.66 Total: -104.76 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.05 Total: -10.20 kcal Total: -82.62 -0.62 -83.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317494745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.288 kcal (2) G-P(sol) polarization free energy of solvation -82.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds