Wall clock time and date at job start Tue Mar 31 2020 22:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40450 * 126.82383 * 2 1 4 4 C 1.30713 * 106.79085 * 180.02562 * 3 2 1 5 5 N 1.33239 * 108.94688 * 359.76422 * 4 3 2 6 6 C 1.30823 * 109.83132 * 0.40381 * 5 4 3 7 7 C 1.50706 * 125.96477 * 179.86544 * 6 5 4 8 8 N 1.46897 * 109.46900 * 269.69162 * 7 6 5 9 9 C 1.46845 * 110.99865 * 294.20408 * 8 7 6 10 10 C 1.53037 * 109.52471 * 174.16381 * 9 8 7 11 11 C 1.53120 * 109.28056 * 59.17929 * 10 9 8 12 12 C 1.53117 * 109.15954 * 302.35124 * 11 10 9 13 13 H 1.09007 * 109.50112 * 297.70505 * 12 11 10 14 14 N 1.46501 * 109.50433 * 177.59517 * 12 11 10 15 15 C 1.34770 * 120.00449 * 85.19025 * 14 12 11 16 16 O 1.21287 * 119.99637 * 0.02562 * 15 14 12 17 17 C 1.50700 * 120.00515 * 180.02562 * 15 14 12 18 18 S 1.80993 * 109.47279 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00079 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99893 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00364 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99901 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00134 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46914 * 60.00431 * 23 21 19 25 25 H 1.48502 * 109.47177 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47501 * 300.00555 * 23 21 19 27 27 C 1.46852 * 110.99846 * 169.99994 * 8 7 6 28 28 H 1.09001 * 109.46980 * 269.95274 * 1 2 3 29 29 H 1.09000 * 109.47128 * 29.94672 * 1 2 3 30 30 H 1.08993 * 109.47733 * 149.95391 * 1 2 3 31 31 H 1.08004 * 125.52442 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.46646 * 29.68270 * 7 6 5 33 33 H 1.09000 * 109.47248 * 149.68987 * 7 6 5 34 34 H 1.08999 * 109.46412 * 294.18158 * 9 8 7 35 35 H 1.09006 * 109.46307 * 54.14853 * 9 8 7 36 36 H 1.08999 * 109.50329 * 299.23986 * 10 9 8 37 37 H 1.09001 * 109.53659 * 179.14215 * 10 9 8 38 38 H 1.08991 * 109.52346 * 182.44343 * 11 10 9 39 39 H 1.09003 * 109.57129 * 62.28317 * 11 10 9 40 40 H 0.96998 * 119.99474 * 265.19686 * 14 12 11 41 41 H 1.09000 * 109.46662 * 300.00517 * 17 15 14 42 42 H 1.09001 * 109.46539 * 59.99872 * 17 15 14 43 43 H 0.96999 * 120.00194 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.45918 * 305.84981 * 27 8 7 45 45 H 1.08998 * 109.46401 * 65.83359 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6765 -0.0006 5 7 3.5095 -0.6556 0.0043 6 6 2.2707 -1.0761 -0.0007 7 6 1.8246 -2.5156 -0.0005 8 7 1.6788 -2.9831 -1.3855 9 6 0.5890 -2.2743 -2.0682 10 6 0.5603 -2.6798 -3.5436 11 6 0.3540 -4.1934 -3.6480 12 6 1.4754 -4.9071 -2.8880 13 1 2.4348 -4.6704 -3.3482 14 7 1.2536 -6.3545 -2.9345 15 6 1.6936 -7.0701 -3.9883 16 8 2.2737 -6.5160 -4.8980 17 6 1.4650 -8.5589 -4.0365 18 16 2.1670 -9.2280 -5.5647 19 6 1.7692 -10.9327 -5.3634 20 1 1.2413 -11.2635 -4.4812 21 6 2.1333 -11.8503 -6.3391 22 7 2.7762 -11.4471 -7.4146 23 14 1.7121 -13.6576 -6.1254 24 1 0.2391 -13.8133 -6.0183 25 1 2.2063 -14.4231 -7.2980 26 1 2.3554 -14.1731 -4.8903 27 6 1.4774 -4.4370 -1.4316 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8905 -0.5130 30 1 -0.3634 -0.8895 -0.5145 31 1 4.4255 1.2874 -0.0003 32 1 2.5676 -3.1261 0.5127 33 1 0.8673 -2.5993 0.5139 34 1 -0.3614 -2.5338 -1.6017 35 1 0.7500 -1.1990 -1.9901 36 1 1.5053 -2.4080 -4.0141 37 1 -0.2581 -2.1653 -4.0472 38 1 0.3763 -4.4926 -4.6958 39 1 -0.6088 -4.4615 -3.2130 40 1 0.7900 -6.7976 -2.2069 41 1 1.9476 -9.0284 -3.1793 42 1 0.3947 -8.7632 -4.0079 43 1 3.0310 -12.0883 -8.0963 44 1 2.2839 -4.9326 -0.8912 45 1 0.5228 -4.6864 -0.9684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317956006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:48 Heat of formation + Delta-G solvation = 64.240402 kcal Electronic energy + Delta-G solvation = -26530.244518 eV Core-core repulsion = 22711.166028 eV Total energy + Delta-G solvation = -3819.078491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.52872 -40.03497 -38.56671 -35.29467 -34.34021 -33.34549 -32.43058 -31.63110 -30.53228 -28.39725 -28.25075 -26.86051 -25.48676 -23.69865 -23.27766 -22.34713 -20.74953 -20.36190 -20.06207 -17.91179 -17.50933 -17.12917 -16.41056 -16.22797 -15.51245 -15.41750 -15.24621 -15.03818 -14.80708 -14.45631 -14.40404 -14.18582 -13.87649 -13.67008 -13.60908 -13.25612 -13.17365 -12.95062 -12.69711 -12.52209 -12.06695 -11.88800 -11.59472 -11.22621 -11.05718 -11.04586 -11.01086 -10.82878 -10.74986 -10.33977 -10.11067 -9.99148 -9.82677 -9.39736 -9.06699 -8.95591 -8.86945 -8.24051 -6.50107 -6.21583 -3.92304 1.14989 1.86178 2.53052 2.94187 3.08170 3.23108 3.24050 3.28550 3.43881 3.63790 3.79646 3.97915 4.20312 4.27252 4.40273 4.51365 4.54689 4.59748 4.66869 4.73132 4.80095 4.93930 4.95161 5.05529 5.10949 5.13380 5.13489 5.30490 5.35620 5.44796 5.62706 5.65291 5.84689 5.87905 5.89241 6.07005 6.08244 6.12350 6.13297 6.29548 6.41774 6.45705 6.67869 7.58921 7.68467 7.75226 8.34724 8.60752 9.23486 10.85739 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.001818 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.873639 B =15402.027978 C =15482.760446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.380 5.380 3 N -0.322 5.322 4 C 0.201 3.799 5 N -0.525 5.525 6 C 0.288 3.712 7 C 0.135 3.865 8 N -0.525 5.525 9 C 0.045 3.955 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.151 3.849 13 H 0.099 0.901 14 N -0.736 5.736 15 C 0.534 3.466 16 O -0.513 6.513 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.055 3.945 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.218 0.782 32 H 0.116 0.884 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.396 0.604 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.089 0.911 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 21.973 18.701 29.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.172 5.172 3 N -0.150 5.150 4 C -0.102 4.102 5 N -0.252 5.252 6 C 0.011 3.989 7 C 0.004 3.996 8 N -0.251 5.251 9 C -0.083 4.083 10 C -0.151 4.151 11 C -0.171 4.171 12 C 0.046 3.954 13 H 0.117 0.883 14 N -0.390 5.390 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.074 4.074 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.235 0.765 32 H 0.135 0.865 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.230 0.770 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.688 23.514 16.754 29.637 hybrid contribution -2.100 -2.173 1.965 3.605 sum -8.788 21.341 18.720 29.717 Atomic orbital electron populations 1.22175 0.74162 1.05395 1.04080 1.50297 1.07822 1.04117 1.54916 1.78063 1.02255 1.07998 1.26635 1.26017 0.95753 0.90461 0.97992 1.70497 1.19431 1.11326 1.23931 1.24056 0.86327 0.91981 0.96562 1.20496 1.01405 0.86873 0.90785 1.61639 1.45093 1.04857 1.13490 1.22456 0.91475 0.98466 0.95857 1.21524 1.03098 0.95955 0.94545 1.22010 0.98310 0.94533 1.02291 1.20780 1.00492 0.79933 0.94235 0.88268 1.45982 1.61666 1.07459 1.23860 1.20295 0.77517 0.88841 0.81302 1.90714 1.39841 1.71968 1.36146 1.23532 1.05351 0.93751 1.07772 1.85417 1.74573 1.05087 1.18176 1.22825 1.43771 0.92639 1.09247 0.90995 1.24990 0.94632 0.99492 0.94470 1.70004 1.36642 1.35219 1.08375 0.86228 0.78810 0.82620 0.77856 1.19976 1.20811 1.19933 1.22297 1.01189 0.86633 0.97238 0.90080 0.88615 0.88746 0.76530 0.86544 0.92273 0.94276 0.90894 0.90507 0.90967 0.90456 0.92071 0.77017 0.89211 0.89289 0.92117 0.89269 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 10.32 59.84 0.62 0.97 16 2 N -0.38 -3.17 3.63 -65.10 -0.24 -3.40 16 3 N -0.32 -3.30 12.70 29.29 0.37 -2.93 16 4 C 0.20 1.95 13.03 -91.82 -1.20 0.76 16 5 N -0.52 -5.88 11.19 -11.97 -0.13 -6.01 16 6 C 0.29 2.63 6.63 -155.70 -1.03 1.60 16 7 C 0.13 0.90 5.19 -4.97 -0.03 0.87 16 8 N -0.52 -4.21 4.65 -236.11 -1.10 -5.31 16 9 C 0.04 0.32 3.93 -3.83 -0.02 0.30 16 10 C -0.11 -0.98 6.09 -26.65 -0.16 -1.14 16 11 C -0.13 -1.37 5.58 -26.61 -0.15 -1.52 16 12 C 0.15 1.67 2.62 -67.85 -0.18 1.50 16 13 H 0.10 1.42 7.58 -51.92 -0.39 1.03 16 14 N -0.74 -9.02 5.08 -53.73 -0.27 -9.30 16 15 C 0.53 9.55 7.82 -10.99 -0.09 9.47 16 16 O -0.51 -11.36 15.52 5.55 0.09 -11.27 16 17 C -0.15 -3.00 6.16 36.01 0.22 -2.77 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 23 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.05 0.42 4.93 -3.83 -0.02 0.40 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.26 4.69 -51.93 -0.24 0.02 16 31 H 0.22 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.12 0.74 7.99 -51.93 -0.41 0.32 16 33 H 0.06 0.25 7.74 -51.93 -0.40 -0.16 16 34 H 0.04 0.21 7.45 -51.93 -0.39 -0.18 16 35 H 0.07 0.54 5.27 -51.93 -0.27 0.27 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.40 3.60 8.60 -40.82 -0.35 3.24 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.09 0.67 8.02 -51.93 -0.42 0.25 16 45 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -37.37 379.50 -10.54 -47.91 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.65 Total: -0.09 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.82 Total: -2.43 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.63 Total: -52.27 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.37 -10.54 -47.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317956006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.154 kcal (2) G-P(sol) polarization free energy of solvation -37.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds