Wall clock time and date at job start Tue Mar 31 2020 22:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38695 * 120.00651 * 2 1 4 4 N 1.30243 * 126.16254 * 0.02587 * 3 2 1 5 5 N 1.26106 * 117.61618 * 180.02562 * 4 3 2 6 6 C 1.29322 * 117.97080 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.06140 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47005 * 90.02958 * 7 6 5 9 9 O 1.21279 * 119.99690 * 0.02562 * 8 7 6 10 10 N 1.34769 * 119.99715 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99666 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46706 * 180.02562 * 11 10 8 13 13 C 1.53044 * 109.45978 * 295.01997 * 12 11 10 14 14 C 1.53188 * 109.31111 * 178.60385 * 13 12 11 15 15 N 1.46925 * 108.76654 * 54.66013 * 14 13 12 16 16 C 1.36938 * 120.63320 * 126.40303 * 15 14 13 17 17 H 1.07996 * 119.99957 * 331.82503 * 16 15 14 18 18 C 1.38808 * 120.00007 * 151.82271 * 16 15 14 19 19 N 1.31619 * 120.00145 * 343.08413 * 18 16 15 20 20 Si 1.86805 * 120.00048 * 163.07987 * 18 16 15 21 21 H 1.48499 * 109.47044 * 59.99795 * 20 18 16 22 22 H 1.48497 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46874 * 300.00206 * 20 18 16 24 24 C 1.46930 * 118.73886 * 306.38041 * 15 14 13 25 25 C 1.53039 * 109.45589 * 174.97191 * 12 11 10 26 26 S 1.76481 * 107.86856 * 0.26760 * 6 5 4 27 27 H 1.08995 * 109.47044 * 59.99649 * 1 2 3 28 28 H 1.08995 * 109.47662 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46989 * 300.00609 * 1 2 3 30 30 H 0.97003 * 119.99203 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46698 * 210.02733 * 7 6 5 32 32 H 1.08999 * 109.47302 * 330.02726 * 7 6 5 33 33 H 0.97005 * 120.00364 * 0.02562 * 10 8 7 34 34 H 1.08997 * 109.46696 * 299.99510 * 11 10 8 35 35 H 1.08999 * 109.47503 * 60.00021 * 11 10 8 36 36 H 1.08996 * 109.46364 * 54.99910 * 12 11 10 37 37 H 1.08999 * 109.49629 * 298.57376 * 13 12 11 38 38 H 1.08994 * 109.49477 * 58.66744 * 13 12 11 39 39 H 1.08997 * 109.59982 * 294.87253 * 14 13 12 40 40 H 1.08997 * 109.70389 * 174.50867 * 14 13 12 41 41 H 0.96996 * 119.99939 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.58880 * 293.82102 * 24 15 14 43 43 H 1.08998 * 109.70206 * 173.46094 * 24 15 14 44 44 H 1.08997 * 109.49859 * 301.33512 * 25 12 11 45 45 H 1.09005 * 109.50085 * 61.40115 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1586 1.2011 0.0000 4 7 1.6324 2.3924 0.0005 5 7 2.4183 3.3786 -0.0001 6 6 3.6896 3.1411 -0.0006 7 6 4.7853 4.1758 -0.0008 8 6 5.1516 4.5198 1.4200 9 8 4.5795 3.9778 2.3418 10 7 6.1155 5.4289 1.6660 11 6 6.4719 5.7630 3.0473 12 6 7.5843 6.8135 3.0470 13 6 8.8522 6.2134 2.4348 14 6 9.9530 7.2783 2.4043 15 7 10.1326 7.8114 3.7616 16 6 11.3701 7.8245 4.3480 17 1 12.1067 7.0850 4.0708 18 6 11.6775 8.7881 5.2985 19 7 10.9362 9.8708 5.4018 20 14 13.1433 8.5483 6.4315 21 1 14.3824 8.4360 5.6207 22 1 13.2552 9.7106 7.3490 23 1 12.9573 7.3074 7.2256 24 6 8.9595 8.3308 4.4776 25 6 7.8696 7.2542 4.4845 26 16 3.9134 1.3906 -0.0082 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9499 -0.8401 0.0004 31 1 5.6601 3.7783 -0.5155 32 1 4.4381 5.0726 -0.5139 33 1 6.5733 5.8621 0.9287 34 1 5.5974 6.1606 3.5621 35 1 6.8189 4.8659 3.5601 36 1 7.2698 7.6754 2.4586 37 1 9.1813 5.3666 3.0371 38 1 8.6422 5.8782 1.4192 39 1 9.6632 8.0845 1.7305 40 1 10.8862 6.8324 2.0604 41 1 11.1513 10.5443 6.0658 42 1 8.5887 9.2228 3.9729 43 1 9.2347 8.5787 5.5027 44 1 6.9603 7.6598 4.9279 45 1 8.2077 6.3974 5.0675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320290059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:21 Heat of formation + Delta-G solvation = 45.381859 kcal Electronic energy + Delta-G solvation = -26157.121745 eV Core-core repulsion = 22337.225486 eV Total energy + Delta-G solvation = -3819.896258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.12633 -39.75716 -37.84311 -36.71751 -34.98566 -33.10923 -32.60630 -30.80999 -29.78512 -29.15451 -27.42288 -26.53636 -24.72189 -23.81170 -22.26733 -21.19438 -20.75379 -20.08693 -19.52007 -19.08209 -17.64105 -17.36206 -16.68610 -16.30483 -15.84288 -15.54657 -15.31895 -14.81706 -14.28712 -14.27650 -13.96748 -13.74300 -13.58694 -13.47017 -13.35271 -13.19716 -12.82496 -12.56982 -12.34845 -12.27130 -11.82172 -11.34265 -11.27704 -10.98752 -10.71829 -10.68237 -10.51580 -10.27136 -10.25445 -10.22734 -10.09395 -9.90029 -9.75509 -9.55495 -9.44325 -9.02937 -8.46738 -8.45273 -6.66781 -5.78848 -3.21369 0.34562 0.45822 1.05556 2.47984 2.53426 2.64133 3.18398 3.38398 3.44440 3.45643 3.93483 4.49766 4.50914 4.60336 4.64745 4.77919 5.00100 5.09863 5.10975 5.23026 5.25970 5.35947 5.37263 5.41404 5.60076 5.85561 5.93820 6.03504 6.13276 6.17626 6.31690 6.39557 6.45154 6.59901 6.64060 6.68309 6.76054 6.80832 6.97291 7.36283 7.44554 7.66161 7.79348 8.13527 8.45578 8.55939 9.21725 9.85279 10.41907 11.29629 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.036258 B = 0.001743 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.068417 B =16064.688235 C =16151.715158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.688 5.688 3 C 0.297 3.703 4 N -0.338 5.338 5 N -0.215 5.215 6 C 0.029 3.971 7 C -0.057 4.057 8 C 0.514 3.486 9 O -0.533 6.533 10 N -0.721 5.721 11 C 0.124 3.876 12 C -0.090 4.090 13 C -0.127 4.127 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.172 3.828 25 C -0.133 4.133 26 S 0.041 5.959 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.418 0.582 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.402 0.598 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.052 0.948 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.863 -18.520 -14.558 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.328 5.328 3 C -0.076 4.076 4 N -0.185 5.185 5 N -0.049 5.049 6 C -0.257 4.257 7 C -0.101 4.101 8 C 0.298 3.702 9 O -0.409 6.409 10 N -0.373 5.373 11 C 0.001 3.999 12 C -0.109 4.109 13 C -0.166 4.166 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.046 3.954 25 C -0.173 4.173 26 S 0.279 5.721 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.255 0.745 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.237 0.763 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.716 -18.567 -13.770 29.124 hybrid contribution 1.156 -0.263 0.335 1.232 sum -16.561 -18.830 -13.435 28.449 Atomic orbital electron populations 1.21701 0.77291 1.02747 1.02919 1.43585 1.06792 1.02477 1.79911 1.26800 0.91059 0.92015 0.97717 1.71340 1.27801 0.92939 1.26412 1.70639 0.99563 1.23228 1.11463 1.28308 0.95470 0.93169 1.08774 1.20099 0.95499 0.97746 0.96756 1.20191 0.79849 0.79759 0.90427 1.90746 1.52167 1.52004 1.45993 1.46023 1.38565 1.42714 1.10029 1.21606 0.97994 0.98923 0.81394 1.21316 0.93739 0.96631 0.99208 1.22077 0.96171 0.99790 0.98591 1.20887 0.95636 0.93537 0.88085 1.44035 1.04542 1.72110 1.10797 1.19134 0.91104 1.08745 1.19331 0.91819 1.25038 0.98202 0.94723 1.01634 1.70015 1.40903 1.07880 1.35932 0.86380 0.82514 0.77073 0.80858 1.20904 1.21636 1.21054 1.20759 0.84425 0.90960 0.99263 1.22182 0.99959 1.01387 0.93770 1.85771 1.04094 1.07533 1.74686 0.91807 0.89956 0.91755 0.74492 0.86386 0.85322 0.76311 0.91710 0.91568 0.91206 0.92195 0.93440 0.96596 0.92906 0.93580 0.96427 0.89440 0.93058 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.04 59.85 0.66 1.14 16 2 N -0.69 -4.44 5.87 -67.42 -0.40 -4.84 16 3 C 0.30 3.07 8.51 -87.14 -0.74 2.33 16 4 N -0.34 -4.53 11.24 31.00 0.35 -4.18 16 5 N -0.22 -3.02 11.55 33.57 0.39 -2.63 16 6 C 0.03 0.33 6.28 -13.34 -0.08 0.25 16 7 C -0.06 -0.49 6.33 -29.03 -0.18 -0.68 16 8 C 0.51 6.33 7.82 -10.99 -0.09 6.25 16 9 O -0.53 -9.00 16.03 5.56 0.09 -8.91 16 10 N -0.72 -8.02 5.27 -60.29 -0.32 -8.34 16 11 C 0.12 1.69 5.06 -4.04 -0.02 1.67 16 12 C -0.09 -1.36 2.19 -90.57 -0.20 -1.56 16 13 C -0.13 -1.98 5.25 -26.61 -0.14 -2.12 16 14 C 0.15 2.87 6.52 -3.71 -0.02 2.84 16 15 N -0.59 -14.42 2.99 -172.32 -0.52 -14.94 16 16 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 17 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 19 N -0.90 -25.96 11.19 55.49 0.62 -25.34 16 20 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.17 3.98 5.30 -3.70 -0.02 3.96 16 25 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16 26 S 0.04 0.40 23.54 -107.50 -2.53 -2.13 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.42 1.50 8.95 -40.82 -0.37 1.13 16 31 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.40 3.38 7.65 -40.82 -0.31 3.07 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.59 7.15 -51.93 -0.37 0.22 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.30 6.07 -51.93 -0.31 1.98 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 382.55 15.07 5.76 5.76 Total: -1.00 -35.54 382.55 -9.61 -45.15 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.82 Total: -0.61 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.21 Total: 4.49 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.13 Total: -60.27 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.53 Total: -2.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.54 -9.61 -45.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320290059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.532 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds