Wall clock time and date at job start Tue Mar 31 2020 22:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38695 * 120.00651 * 2 1 4 4 N 1.30243 * 126.16254 * 0.02587 * 3 2 1 5 5 N 1.26106 * 117.61618 * 180.02562 * 4 3 2 6 6 C 1.29322 * 117.97080 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.06140 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47005 * 90.02958 * 7 6 5 9 9 O 1.21279 * 119.99690 * 0.02562 * 8 7 6 10 10 N 1.34769 * 119.99715 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99666 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46706 * 180.02562 * 11 10 8 13 13 C 1.53044 * 109.45978 * 295.01997 * 12 11 10 14 14 C 1.53188 * 109.31111 * 178.60385 * 13 12 11 15 15 N 1.46925 * 108.76654 * 54.66013 * 14 13 12 16 16 C 1.36938 * 120.63320 * 126.40303 * 15 14 13 17 17 H 1.07996 * 119.99957 * 331.82503 * 16 15 14 18 18 C 1.38808 * 120.00007 * 151.82271 * 16 15 14 19 19 N 1.31619 * 120.00145 * 343.08413 * 18 16 15 20 20 Si 1.86805 * 120.00048 * 163.07987 * 18 16 15 21 21 H 1.48499 * 109.47044 * 59.99795 * 20 18 16 22 22 H 1.48497 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46874 * 300.00206 * 20 18 16 24 24 C 1.46930 * 118.73886 * 306.38041 * 15 14 13 25 25 C 1.53039 * 109.45589 * 174.97191 * 12 11 10 26 26 S 1.76481 * 107.86856 * 0.26760 * 6 5 4 27 27 H 1.08995 * 109.47044 * 59.99649 * 1 2 3 28 28 H 1.08995 * 109.47662 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46989 * 300.00609 * 1 2 3 30 30 H 0.97003 * 119.99203 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46698 * 210.02733 * 7 6 5 32 32 H 1.08999 * 109.47302 * 330.02726 * 7 6 5 33 33 H 0.97005 * 120.00364 * 0.02562 * 10 8 7 34 34 H 1.08997 * 109.46696 * 299.99510 * 11 10 8 35 35 H 1.08999 * 109.47503 * 60.00021 * 11 10 8 36 36 H 1.08996 * 109.46364 * 54.99910 * 12 11 10 37 37 H 1.08999 * 109.49629 * 298.57376 * 13 12 11 38 38 H 1.08994 * 109.49477 * 58.66744 * 13 12 11 39 39 H 1.08997 * 109.59982 * 294.87253 * 14 13 12 40 40 H 1.08997 * 109.70389 * 174.50867 * 14 13 12 41 41 H 0.96996 * 119.99939 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.58880 * 293.82102 * 24 15 14 43 43 H 1.08998 * 109.70206 * 173.46094 * 24 15 14 44 44 H 1.08997 * 109.49859 * 301.33512 * 25 12 11 45 45 H 1.09005 * 109.50085 * 61.40115 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1586 1.2011 0.0000 4 7 1.6324 2.3924 0.0005 5 7 2.4183 3.3786 -0.0001 6 6 3.6896 3.1411 -0.0006 7 6 4.7853 4.1758 -0.0008 8 6 5.1516 4.5198 1.4200 9 8 4.5795 3.9778 2.3418 10 7 6.1155 5.4289 1.6660 11 6 6.4719 5.7630 3.0473 12 6 7.5843 6.8135 3.0470 13 6 8.8522 6.2134 2.4348 14 6 9.9530 7.2783 2.4043 15 7 10.1326 7.8114 3.7616 16 6 11.3701 7.8245 4.3480 17 1 12.1067 7.0850 4.0708 18 6 11.6775 8.7881 5.2985 19 7 10.9362 9.8708 5.4018 20 14 13.1433 8.5483 6.4315 21 1 14.3824 8.4360 5.6207 22 1 13.2552 9.7106 7.3490 23 1 12.9573 7.3074 7.2256 24 6 8.9595 8.3308 4.4776 25 6 7.8696 7.2542 4.4845 26 16 3.9134 1.3906 -0.0082 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9499 -0.8401 0.0004 31 1 5.6601 3.7783 -0.5155 32 1 4.4381 5.0726 -0.5139 33 1 6.5733 5.8621 0.9287 34 1 5.5974 6.1606 3.5621 35 1 6.8189 4.8659 3.5601 36 1 7.2698 7.6754 2.4586 37 1 9.1813 5.3666 3.0371 38 1 8.6422 5.8782 1.4192 39 1 9.6632 8.0845 1.7305 40 1 10.8862 6.8324 2.0604 41 1 11.1513 10.5443 6.0658 42 1 8.5887 9.2228 3.9729 43 1 9.2347 8.5787 5.5027 44 1 6.9603 7.6598 4.9279 45 1 8.2077 6.3974 5.0675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320290059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:20 Heat of formation + Delta-G solvation = 19.434920 kcal Electronic energy + Delta-G solvation = -26158.246889 eV Core-core repulsion = 22337.225486 eV Total energy + Delta-G solvation = -3821.021402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.94098 -40.77703 -39.31101 -37.32521 -36.38430 -34.50060 -33.60839 -32.44972 -31.38028 -30.00000 -28.44684 -27.61728 -25.88397 -25.08205 -23.80122 -22.68723 -21.76203 -20.86657 -20.66045 -20.20348 -18.72637 -18.32543 -18.13085 -17.20833 -16.81158 -16.62912 -16.44975 -16.05230 -15.70386 -15.28511 -15.22564 -14.90392 -14.83977 -14.70097 -14.47183 -14.16976 -13.92302 -13.79766 -13.56637 -13.18069 -13.05425 -12.94991 -12.75821 -12.53402 -12.25693 -12.01037 -11.96719 -11.81218 -11.58822 -11.47488 -11.25566 -11.07744 -11.04212 -10.95031 -10.52151 -10.49121 -10.05780 -9.13099 -8.63849 -7.85242 -5.29899 -0.39083 -0.27161 0.28483 1.47085 1.49803 1.56083 1.62291 1.64686 2.06799 2.29585 2.52859 3.22726 3.29237 3.74694 3.80722 3.85795 3.90042 3.98457 4.10983 4.16412 4.35665 4.52407 4.56797 4.58083 4.58146 4.65661 4.74390 4.76966 4.86150 4.91406 4.97246 5.06287 5.18808 5.32640 5.34021 5.41988 5.48854 5.55549 5.58632 5.68457 5.81942 6.24897 6.42154 6.57340 7.18163 7.25630 7.76223 7.91259 8.41522 9.20611 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.036258 B = 0.001743 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.068417 B =16064.688235 C =16151.715158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.673 5.673 3 C 0.290 3.710 4 N -0.377 5.377 5 N -0.251 5.251 6 C 0.014 3.986 7 C -0.051 4.051 8 C 0.515 3.485 9 O -0.584 6.584 10 N -0.709 5.709 11 C 0.137 3.863 12 C -0.078 4.078 13 C -0.114 4.114 14 C 0.138 3.862 15 N -0.612 5.612 16 C -0.262 4.262 17 H 0.065 0.935 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.281 1.281 24 C 0.178 3.822 25 C -0.124 4.124 26 S 0.069 5.931 27 H 0.057 0.943 28 H 0.121 0.879 29 H 0.049 0.951 30 H 0.432 0.568 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.419 0.581 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.019 0.981 40 H 0.052 0.948 41 H 0.249 0.751 42 H -0.001 1.001 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.925 -20.622 -16.413 31.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.314 5.314 3 C -0.084 4.084 4 N -0.225 5.225 5 N -0.084 5.084 6 C -0.273 4.273 7 C -0.095 4.095 8 C 0.300 3.700 9 O -0.463 6.463 10 N -0.361 5.361 11 C 0.013 3.987 12 C -0.096 4.096 13 C -0.152 4.152 14 C 0.013 3.987 15 N -0.336 5.336 16 C -0.393 4.393 17 H 0.083 0.917 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.792 3.208 21 H -0.200 1.200 22 H -0.221 1.221 23 H -0.207 1.207 24 C 0.052 3.948 25 C -0.163 4.163 26 S 0.307 5.693 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.068 0.932 30 H 0.272 0.728 31 H 0.176 0.824 32 H 0.171 0.829 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.017 0.983 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.775 -20.713 -15.683 31.479 hybrid contribution 1.151 0.321 0.873 1.480 sum -16.624 -20.392 -14.810 30.192 Atomic orbital electron populations 1.21861 0.76250 1.04964 1.01878 1.43817 1.07536 1.01913 1.78115 1.27074 0.91962 0.92473 0.96870 1.71242 1.28719 0.93886 1.28674 1.70571 1.00760 1.24256 1.12792 1.28788 0.95491 0.94800 1.08197 1.20274 0.96234 0.98445 0.94510 1.20767 0.78937 0.78832 0.91420 1.90733 1.53876 1.53852 1.47876 1.45834 1.38407 1.42463 1.09437 1.21238 0.96845 0.97719 0.82863 1.21145 0.94199 0.97401 0.96898 1.21935 0.94495 0.97763 1.01055 1.21100 0.97309 0.94541 0.85723 1.44322 1.04001 1.72406 1.12850 1.19476 0.92148 1.08269 1.19360 0.91715 1.25766 1.00978 0.94669 1.03253 1.70168 1.42675 1.08676 1.36564 0.85397 0.79860 0.76622 0.78917 1.20000 1.22138 1.20695 1.20550 0.85572 0.91984 0.96722 1.21986 0.98637 0.99355 0.96340 1.85549 1.03119 1.06190 1.74404 0.92428 0.86091 0.93204 0.72777 0.82401 0.82918 0.74288 0.92492 0.92588 0.90258 0.93208 0.89027 0.96271 0.92976 0.94208 0.98326 0.93281 0.91606 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 11.04 127.77 1.41 2.20 16 2 N -0.67 -7.66 5.87 -367.22 -2.16 -9.81 16 3 C 0.29 5.74 8.51 179.13 1.52 7.26 16 4 N -0.38 -10.08 11.24 -55.84 -0.63 -10.71 16 5 N -0.25 -6.92 11.55 -47.71 -0.55 -7.47 16 6 C 0.01 0.30 6.28 88.48 0.56 0.85 16 7 C -0.05 -0.73 6.33 29.10 0.18 -0.54 16 8 C 0.51 11.42 7.82 87.66 0.69 12.11 16 9 O -0.58 -19.13 16.03 -3.03 -0.05 -19.18 16 10 N -0.71 -13.46 5.27 -463.05 -2.44 -15.91 16 11 C 0.14 3.46 5.06 86.38 0.44 3.90 16 12 C -0.08 -2.18 2.19 -10.76 -0.02 -2.20 16 13 C -0.11 -3.22 5.25 30.67 0.16 -3.06 16 14 C 0.14 5.27 6.52 86.36 0.56 5.83 16 15 N -0.61 -29.95 2.99 -699.11 -2.09 -32.04 16 16 C -0.26 -14.31 9.58 84.03 0.81 -13.51 16 17 H 0.07 3.44 7.88 -2.91 -0.02 3.42 16 18 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 19 N -0.93 -55.32 11.19 21.65 0.24 -55.08 16 20 Si 0.96 44.92 29.59 68.60 2.03 46.94 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 C 0.18 8.40 5.30 86.36 0.46 8.86 16 25 C -0.12 -4.45 5.36 30.67 0.16 -4.28 16 26 S 0.07 1.22 23.54 -56.49 -1.33 -0.11 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.43 2.15 8.95 -92.71 -0.83 1.32 16 31 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.42 5.14 7.65 -92.70 -0.71 4.43 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.83 7.15 -2.39 -0.02 1.81 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.05 2.68 6.07 -2.39 -0.01 2.67 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -81.07 382.55 -0.15 -81.22 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -0.52 Total: 7.18 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 7.34 Total: 14.96 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -7.63 Total: -131.01 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.05 Total: -19.18 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.33 Total: -0.11 kcal Total: -81.07 -0.15 -81.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320290059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.650 kcal (2) G-P(sol) polarization free energy of solvation -81.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds