Wall clock time and date at job start Tue Mar 31 2020 22:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.46862 * 2 1 4 4 N 1.40451 * 126.82127 * 270.04079 * 3 2 1 5 5 C 1.30720 * 106.78913 * 179.97438 * 4 3 2 6 6 N 1.33237 * 108.94893 * 359.76249 * 5 4 3 7 7 C 1.30833 * 109.82824 * 0.40156 * 6 5 4 8 8 C 1.50703 * 125.96007 * 179.86661 * 7 6 5 9 9 N 1.46902 * 109.46852 * 269.68746 * 8 7 6 10 10 C 1.46907 * 110.99599 * 174.95898 * 9 8 7 11 11 C 1.52996 * 115.55437 * 279.36835 * 10 9 8 12 12 N 1.46504 * 109.46946 * 325.03672 * 11 10 9 13 13 C 1.34777 * 119.99590 * 174.95546 * 12 11 10 14 14 O 1.21276 * 120.00125 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99776 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.46936 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99871 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00050 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00210 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99347 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00009 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47203 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46908 * 120.00196 * 21 19 17 24 24 H 1.48496 * 109.47198 * 240.00061 * 21 19 17 25 25 C 1.53005 * 117.49160 * 133.65758 * 10 9 8 26 26 C 1.52999 * 117.49329 * 65.03971 * 10 9 8 27 27 H 1.09001 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47255 * 300.00174 * 1 2 3 29 29 H 1.08997 * 109.47174 * 60.00210 * 1 2 3 30 30 H 1.08996 * 109.47734 * 240.00004 * 2 1 3 31 31 H 1.09000 * 109.47557 * 119.99435 * 2 1 3 32 32 H 1.07997 * 125.52004 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47255 * 29.68667 * 8 7 6 34 34 H 1.08996 * 109.46876 * 149.69121 * 8 7 6 35 35 H 1.00898 * 111.00577 * 298.91656 * 9 8 7 36 36 H 1.08996 * 109.46787 * 85.04047 * 11 10 9 37 37 H 1.09000 * 109.46831 * 205.04316 * 11 10 9 38 38 H 0.96996 * 120.00002 * 354.96307 * 12 11 10 39 39 H 1.09005 * 109.46677 * 299.99405 * 15 13 12 40 40 H 1.08995 * 109.47560 * 59.99597 * 15 13 12 41 41 H 0.97001 * 119.99110 * 180.02562 * 20 19 17 42 42 H 1.08995 * 117.50151 * 0.02562 * 25 10 9 43 43 H 1.09000 * 117.49575 * 145.02648 * 25 10 9 44 44 H 1.09001 * 117.50252 * 214.97232 * 26 10 9 45 45 H 1.09000 * 117.50134 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2980 2.1751 -1.1243 5 6 2.7071 3.3331 -0.6765 6 7 2.6944 3.3109 0.6556 7 6 2.2870 2.1409 1.0760 8 6 2.1386 1.7203 2.5156 9 7 3.3963 1.1220 2.9829 10 6 3.3292 0.8084 4.4166 11 6 3.5698 1.9871 5.3619 12 7 4.5643 2.8886 4.7750 13 6 4.8616 4.0529 5.3854 14 8 4.3063 4.3540 6.4206 15 6 5.8842 4.9806 4.7814 16 16 6.0592 6.4481 5.8264 17 6 7.2789 7.3314 4.9116 18 1 7.6754 6.9145 3.9975 19 6 7.7303 8.5629 5.3657 20 7 7.2474 9.0706 6.4800 21 14 9.0239 9.4989 4.3963 22 1 9.4003 8.7180 3.1906 23 1 8.4753 10.8152 3.9815 24 1 10.2238 9.7082 5.2456 25 6 3.8260 -0.5684 4.8624 26 6 2.3274 -0.2597 4.8598 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.0030 4.1731 -1.2874 33 1 1.9019 2.5916 3.1261 34 1 1.3351 0.9886 2.5993 35 1 3.6288 0.3014 2.4438 36 1 2.6353 2.5268 5.5147 37 1 3.9359 1.6161 6.3192 38 1 5.0087 2.6477 3.9472 39 1 6.8435 4.4676 4.7111 40 1 5.5590 5.2809 3.7854 41 1 7.5626 9.9314 6.7972 42 1 4.2029 -1.2411 4.0922 43 1 4.3245 -0.6346 5.8295 44 1 1.8400 -0.1230 5.8252 45 1 1.7179 -0.7293 4.0878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323394230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:35 Heat of formation + Delta-G solvation = 84.484574 kcal Electronic energy + Delta-G solvation = -26625.767752 eV Core-core repulsion = 22807.567115 eV Total energy + Delta-G solvation = -3818.200637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.38525 -39.70563 -38.40514 -35.61111 -34.28782 -33.76778 -32.33278 -31.20684 -30.43114 -29.60814 -26.59517 -26.19048 -25.30750 -24.42164 -22.95308 -22.08446 -20.60601 -20.25466 -20.02306 -17.74101 -17.43649 -16.84042 -16.50718 -16.05787 -15.93062 -15.50669 -15.10945 -14.88154 -14.71512 -14.63186 -14.33166 -13.92181 -13.73235 -13.55502 -13.41950 -13.29354 -12.95319 -12.80945 -12.47808 -12.43683 -12.16626 -12.01088 -11.67955 -11.61802 -11.32138 -10.99712 -10.91591 -10.66955 -10.53155 -10.16494 -10.02667 -9.86828 -9.70439 -9.26524 -9.01759 -8.98383 -8.65538 -8.10969 -6.38097 -6.12621 -3.81370 1.24777 1.91115 2.66271 3.04049 3.24609 3.28082 3.29254 3.36240 3.45408 3.46981 3.81195 3.88012 3.93536 4.29560 4.30539 4.32142 4.33583 4.37981 4.46509 4.54807 4.59060 4.90908 4.99471 5.10407 5.14370 5.19992 5.22590 5.25360 5.36599 5.41292 5.45013 5.58237 5.60279 5.63806 5.88751 6.02933 6.08000 6.19286 6.26025 6.33813 6.49769 6.65232 6.86381 7.69864 7.89051 7.99021 8.45560 8.81294 9.33115 10.94966 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.002660 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.772770 B =10523.429476 C =12389.019533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 N -0.378 5.378 4 N -0.321 5.321 5 C 0.202 3.798 6 N -0.516 5.516 7 C 0.281 3.719 8 C 0.142 3.858 9 N -0.639 5.639 10 C 0.040 3.960 11 C 0.171 3.829 12 N -0.723 5.723 13 C 0.532 3.468 14 O -0.527 6.527 15 C -0.150 4.150 16 S -0.063 6.063 17 C -0.531 4.531 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.869 5.869 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.281 1.281 25 C -0.165 4.165 26 C -0.203 4.203 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.218 0.782 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.344 0.656 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.408 0.592 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.266 0.734 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 -25.680 -11.874 31.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.171 5.171 4 N -0.148 5.148 5 C -0.101 4.101 6 N -0.243 5.243 7 C 0.004 3.996 8 C 0.011 3.989 9 N -0.270 5.270 10 C -0.052 4.052 11 C 0.046 3.954 12 N -0.378 5.378 13 C 0.319 3.681 14 O -0.402 6.402 15 C -0.301 4.301 16 S 0.164 5.836 17 C -0.679 4.679 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.505 5.505 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.207 1.207 25 C -0.202 4.202 26 C -0.242 4.242 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.235 0.765 33 H 0.134 0.866 34 H 0.074 0.926 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.244 0.756 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.133 -24.390 -10.519 30.088 hybrid contribution 1.044 -0.834 -2.301 2.661 sum -13.090 -25.224 -12.819 31.176 Atomic orbital electron populations 1.22191 0.93734 1.03446 1.03531 1.21726 0.95640 0.77907 1.04533 1.50510 1.49643 1.12849 1.04075 1.78050 1.23750 1.05021 1.08027 1.26062 0.97565 0.95970 0.90501 1.70570 1.22508 1.19902 1.11285 1.24100 0.95989 0.87602 0.91939 1.20320 0.91035 1.01149 0.86413 1.59890 1.31876 1.33923 1.01336 1.21899 1.04504 0.90734 0.88091 1.20609 0.93251 0.87941 0.93607 1.45768 1.43351 1.19993 1.28688 1.20277 0.82701 0.80915 0.84254 1.90684 1.52201 1.74077 1.23244 1.23493 0.99641 1.01823 1.05107 1.85327 1.54064 1.12622 1.31633 1.22924 1.26097 1.06987 1.11884 0.90910 1.24987 0.96919 0.96507 0.95275 1.70040 1.41731 1.18281 1.20413 0.86129 0.80457 0.79390 0.79598 1.19605 1.20628 1.20669 1.23363 0.96625 0.96416 1.03812 1.23563 0.92900 1.03589 1.04194 0.90112 0.91870 0.91339 0.88231 0.89130 0.76527 0.86642 0.92552 0.83685 0.91193 0.91121 0.75579 0.89480 0.89045 0.92370 0.88419 0.87375 0.87649 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.24 37.16 0.38 -0.30 16 2 C 0.12 0.59 6.85 -4.04 -0.03 0.56 16 3 N -0.38 -3.40 3.64 -58.34 -0.21 -3.61 16 4 N -0.32 -3.64 12.70 29.29 0.37 -3.27 16 5 C 0.20 2.33 13.03 -91.81 -1.20 1.13 16 6 N -0.52 -6.77 11.19 -11.97 -0.13 -6.91 16 7 C 0.28 2.87 7.54 -155.69 -1.17 1.69 16 8 C 0.14 1.10 5.59 -4.97 -0.03 1.07 16 9 N -0.64 -4.65 5.58 -101.21 -0.57 -5.21 16 10 C 0.04 0.29 2.13 -131.60 -0.28 0.01 16 11 C 0.17 1.92 5.74 -4.04 -0.02 1.90 16 12 N -0.72 -10.24 5.40 -60.30 -0.33 -10.57 16 13 C 0.53 10.40 7.85 -10.98 -0.09 10.31 16 14 O -0.53 -12.24 15.86 5.56 0.09 -12.15 16 15 C -0.15 -3.22 6.16 36.01 0.22 -3.00 16 16 S -0.06 -1.77 20.57 -107.50 -2.21 -3.98 16 17 C -0.53 -15.59 9.50 30.94 0.29 -15.30 16 18 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.79 13.22 55.49 0.73 -26.06 16 21 Si 0.92 22.02 29.55 -169.99 -5.02 16.99 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.16 -0.91 9.87 -26.73 -0.26 -1.18 16 26 C -0.20 -1.02 9.66 -26.73 -0.26 -1.28 16 27 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.22 7.72 -51.93 -0.40 -0.18 16 32 H 0.22 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.12 1.13 8.01 -51.93 -0.42 0.71 16 34 H 0.06 0.29 7.23 -51.93 -0.38 -0.09 16 35 H 0.34 1.94 8.54 -39.29 -0.34 1.61 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 38 H 0.41 5.28 7.75 -40.82 -0.32 4.96 16 39 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 40 H 0.09 1.89 8.14 -51.92 -0.42 1.47 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.10 0.43 8.07 -51.93 -0.42 0.01 16 43 H 0.11 0.64 8.05 -51.93 -0.42 0.22 16 44 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.34 7.86 -51.93 -0.41 -0.07 16 LS Contribution 399.12 15.07 6.01 6.01 Total: -1.00 -38.02 399.12 -10.65 -48.67 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.85 Total: 2.44 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.54 Total: -2.36 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.13 Total: -55.62 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.21 Total: -3.98 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.02 -10.65 -48.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323394230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.152 kcal (2) G-P(sol) polarization free energy of solvation -38.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds