Wall clock time and date at job start Tue Mar 31 2020 22:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.46862 * 2 1 4 4 N 1.40451 * 126.82127 * 270.04079 * 3 2 1 5 5 C 1.30720 * 106.78913 * 179.97438 * 4 3 2 6 6 N 1.33237 * 108.94893 * 359.76249 * 5 4 3 7 7 C 1.30833 * 109.82824 * 0.40156 * 6 5 4 8 8 C 1.50703 * 125.96007 * 179.86661 * 7 6 5 9 9 N 1.46902 * 109.46852 * 269.68746 * 8 7 6 10 10 C 1.46907 * 110.99599 * 174.95898 * 9 8 7 11 11 C 1.52996 * 115.55437 * 279.36835 * 10 9 8 12 12 N 1.46504 * 109.46946 * 325.03672 * 11 10 9 13 13 C 1.34777 * 119.99590 * 174.95546 * 12 11 10 14 14 O 1.21276 * 120.00125 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99776 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.46936 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99871 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00050 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00210 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99347 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00009 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47203 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46908 * 120.00196 * 21 19 17 24 24 H 1.48496 * 109.47198 * 240.00061 * 21 19 17 25 25 C 1.53005 * 117.49160 * 133.65758 * 10 9 8 26 26 C 1.52999 * 117.49329 * 65.03971 * 10 9 8 27 27 H 1.09001 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47255 * 300.00174 * 1 2 3 29 29 H 1.08997 * 109.47174 * 60.00210 * 1 2 3 30 30 H 1.08996 * 109.47734 * 240.00004 * 2 1 3 31 31 H 1.09000 * 109.47557 * 119.99435 * 2 1 3 32 32 H 1.07997 * 125.52004 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47255 * 29.68667 * 8 7 6 34 34 H 1.08996 * 109.46876 * 149.69121 * 8 7 6 35 35 H 1.00898 * 111.00577 * 298.91656 * 9 8 7 36 36 H 1.08996 * 109.46787 * 85.04047 * 11 10 9 37 37 H 1.09000 * 109.46831 * 205.04316 * 11 10 9 38 38 H 0.96996 * 120.00002 * 354.96307 * 12 11 10 39 39 H 1.09005 * 109.46677 * 299.99405 * 15 13 12 40 40 H 1.08995 * 109.47560 * 59.99597 * 15 13 12 41 41 H 0.97001 * 119.99110 * 180.02562 * 20 19 17 42 42 H 1.08995 * 117.50151 * 0.02562 * 25 10 9 43 43 H 1.09000 * 117.49575 * 145.02648 * 25 10 9 44 44 H 1.09001 * 117.50252 * 214.97232 * 26 10 9 45 45 H 1.09000 * 117.50134 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2980 2.1751 -1.1243 5 6 2.7071 3.3331 -0.6765 6 7 2.6944 3.3109 0.6556 7 6 2.2870 2.1409 1.0760 8 6 2.1386 1.7203 2.5156 9 7 3.3963 1.1220 2.9829 10 6 3.3292 0.8084 4.4166 11 6 3.5698 1.9871 5.3619 12 7 4.5643 2.8886 4.7750 13 6 4.8616 4.0529 5.3854 14 8 4.3063 4.3540 6.4206 15 6 5.8842 4.9806 4.7814 16 16 6.0592 6.4481 5.8264 17 6 7.2789 7.3314 4.9116 18 1 7.6754 6.9145 3.9975 19 6 7.7303 8.5629 5.3657 20 7 7.2474 9.0706 6.4800 21 14 9.0239 9.4989 4.3963 22 1 9.4003 8.7180 3.1906 23 1 8.4753 10.8152 3.9815 24 1 10.2238 9.7082 5.2456 25 6 3.8260 -0.5684 4.8624 26 6 2.3274 -0.2597 4.8598 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.0030 4.1731 -1.2874 33 1 1.9019 2.5916 3.1261 34 1 1.3351 0.9886 2.5993 35 1 3.6288 0.3014 2.4438 36 1 2.6353 2.5268 5.5147 37 1 3.9359 1.6161 6.3192 38 1 5.0087 2.6477 3.9472 39 1 6.8435 4.4676 4.7111 40 1 5.5590 5.2809 3.7854 41 1 7.5626 9.9314 6.7972 42 1 4.2029 -1.2411 4.0922 43 1 4.3245 -0.6346 5.8295 44 1 1.8400 -0.1230 5.8252 45 1 1.7179 -0.7293 4.0878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323394230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:34 Heat of formation + Delta-G solvation = 57.150163 kcal Electronic energy + Delta-G solvation = -26626.953061 eV Core-core repulsion = 22807.567115 eV Total energy + Delta-G solvation = -3819.385946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.13106 -40.74245 -39.50474 -36.16392 -35.18596 -34.76523 -34.56161 -31.92049 -31.20426 -30.97692 -27.83412 -27.29505 -26.97519 -24.91079 -23.37089 -22.79436 -21.59485 -21.24210 -20.91916 -19.72441 -18.05488 -17.78565 -17.63459 -17.04911 -16.86686 -16.77387 -16.41596 -16.11491 -16.03497 -15.51321 -15.19774 -14.91040 -14.63876 -14.53892 -14.45838 -14.24512 -14.16918 -13.86066 -13.35098 -13.24124 -13.13574 -13.04970 -12.89375 -12.72324 -12.58144 -12.34483 -12.11465 -11.86677 -11.67756 -11.14209 -11.13309 -10.98521 -10.87997 -10.77647 -10.58737 -10.25204 -9.94940 -9.54058 -8.63262 -8.32862 -6.09967 0.51603 1.29497 1.32850 1.42201 1.48599 1.60757 1.70058 1.87530 2.27892 2.33615 2.76490 2.89666 3.00921 3.21087 3.36622 3.46985 3.68375 3.74239 3.86737 3.94039 4.00465 4.02666 4.13565 4.27501 4.33377 4.38876 4.44927 4.55919 4.67376 4.71224 4.73238 4.76083 4.79138 4.81539 5.04773 5.15218 5.24207 5.33172 5.41959 5.44036 5.49583 5.73851 5.88745 6.22316 6.24291 6.64900 7.08448 7.12122 7.34832 8.76771 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.002660 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.772770 B =10523.429476 C =12389.019533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.370 5.370 4 N -0.341 5.341 5 C 0.188 3.812 6 N -0.564 5.564 7 C 0.280 3.720 8 C 0.149 3.851 9 N -0.646 5.646 10 C 0.027 3.973 11 C 0.167 3.833 12 N -0.696 5.696 13 C 0.533 3.467 14 O -0.570 6.570 15 C -0.127 4.127 16 S -0.147 6.147 17 C -0.545 4.545 18 H 0.079 0.921 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.272 1.272 25 C -0.155 4.155 26 C -0.183 4.183 27 H 0.108 0.892 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.358 0.642 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.417 0.583 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.271 0.729 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.374 -28.604 -13.370 34.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.162 5.162 4 N -0.169 5.169 5 C -0.114 4.114 6 N -0.292 5.292 7 C 0.003 3.997 8 C 0.018 3.982 9 N -0.279 5.279 10 C -0.065 4.065 11 C 0.042 3.958 12 N -0.350 5.350 13 C 0.318 3.682 14 O -0.449 6.449 15 C -0.278 4.278 16 S 0.080 5.920 17 C -0.693 4.693 18 H 0.097 0.903 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.192 4.192 26 C -0.222 4.222 27 H 0.126 0.874 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.141 0.859 32 H 0.249 0.751 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.179 0.821 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.255 0.745 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.135 0.865 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.003 -27.401 -12.053 33.048 hybrid contribution 0.905 -0.086 -1.846 2.057 sum -13.097 -27.487 -13.898 33.470 Atomic orbital electron populations 1.22169 0.93060 1.04825 1.02321 1.22188 0.96176 0.75872 1.06478 1.50749 1.48615 1.13832 1.03050 1.77965 1.24194 1.05308 1.09459 1.26429 0.97832 0.96717 0.90460 1.70521 1.24445 1.22010 1.12233 1.24424 0.95182 0.87165 0.92979 1.20298 0.92379 1.01126 0.84416 1.59706 1.31870 1.34914 1.01440 1.21536 1.07822 0.89829 0.87294 1.20786 0.91503 0.88637 0.94835 1.45550 1.42904 1.18371 1.28144 1.19963 0.82239 0.82072 0.83894 1.90668 1.53780 1.75316 1.25182 1.23326 1.01470 0.99246 1.03759 1.85454 1.54697 1.16913 1.34899 1.23225 1.26283 1.07644 1.12108 0.90291 1.26127 0.99293 0.97448 0.96321 1.70193 1.43367 1.18916 1.22276 0.84904 0.77113 0.77716 0.78193 1.18256 1.19853 1.19699 1.23452 0.97093 0.94639 1.04011 1.23656 0.92889 1.00956 1.04712 0.87389 0.92090 0.93522 0.87645 0.85854 0.75065 0.89118 0.89150 0.82072 0.92495 0.91261 0.74509 0.87738 0.88202 0.91992 0.86479 0.87875 0.87808 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 71.98 0.74 -0.14 16 2 C 0.11 0.74 6.85 86.38 0.59 1.33 16 3 N -0.37 -6.07 3.64 -338.50 -1.23 -7.30 16 4 N -0.34 -7.59 12.70 -61.24 -0.78 -8.37 16 5 C 0.19 4.40 13.03 180.76 2.36 6.75 16 6 N -0.56 -14.88 11.19 -191.77 -2.15 -17.02 16 7 C 0.28 5.39 7.54 138.23 1.04 6.43 16 8 C 0.15 2.00 5.59 85.56 0.48 2.48 16 9 N -0.65 -7.65 5.58 -474.14 -2.65 -10.30 16 10 C 0.03 0.32 2.13 3.53 0.01 0.33 16 11 C 0.17 3.60 5.74 86.38 0.50 4.10 16 12 N -0.70 -19.32 5.40 -463.07 -2.50 -21.82 16 13 C 0.53 21.09 7.85 87.66 0.69 21.77 16 14 O -0.57 -27.38 15.86 -3.02 -0.05 -27.43 16 15 C -0.13 -5.50 6.16 71.24 0.44 -5.06 16 16 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 17 C -0.54 -32.46 9.50 67.95 0.65 -31.82 16 18 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.75 5.49 84.86 0.47 1.21 16 20 N -0.91 -57.36 13.22 21.65 0.29 -57.07 16 21 Si 1.00 45.19 29.55 68.60 2.03 47.21 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 C -0.15 -1.15 9.87 30.60 0.30 -0.84 16 26 C -0.18 -1.13 9.66 30.59 0.30 -0.84 16 27 H 0.11 0.00 8.14 -2.39 -0.02 -0.01 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.12 0.00 7.72 -2.39 -0.02 -0.02 16 32 H 0.23 4.09 8.06 -2.91 -0.02 4.06 16 33 H 0.09 1.72 8.01 -2.39 -0.02 1.70 16 34 H 0.09 0.58 7.23 -2.39 -0.02 0.56 16 35 H 0.36 2.64 8.54 -89.70 -0.77 1.87 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.54 7.91 -2.39 -0.02 1.52 16 38 H 0.42 10.23 7.75 -92.71 -0.72 9.51 16 39 H 0.10 4.14 8.14 -2.39 -0.02 4.12 16 40 H 0.10 4.14 8.14 -2.40 -0.02 4.12 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.12 0.46 8.07 -2.39 -0.02 0.45 16 43 H 0.10 0.92 8.05 -2.39 -0.02 0.90 16 44 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.12 0.20 7.86 -2.39 -0.02 0.18 16 Total: -1.00 -86.81 399.12 -0.12 -86.94 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.47 Total: 19.15 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 8.54 Total: 5.70 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -9.02 Total: -121.88 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.05 Total: -27.43 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -86.81 -0.12 -86.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323394230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.087 kcal (2) G-P(sol) polarization free energy of solvation -86.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds