Wall clock time and date at job start Tue Mar 31 2020 23:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99797 * 2 1 4 4 H 1.48502 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47595 * 300.00616 * 3 2 1 6 6 H 1.48505 * 109.46738 * 60.00381 * 3 2 1 7 7 C 1.37875 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99633 * 182.97437 * 7 2 1 9 9 C 1.50693 * 120.00075 * 2.97300 * 7 2 1 10 10 C 1.53001 * 115.54996 * 324.68271 * 9 7 2 11 11 N 1.46498 * 109.47093 * 305.41437 * 10 9 7 12 12 C 1.34776 * 120.00468 * 184.86618 * 11 10 9 13 13 O 1.21352 * 119.99534 * 5.40573 * 12 11 10 14 14 C 1.49446 * 120.00497 * 185.13280 * 12 11 10 15 15 O 1.21355 * 119.99998 * 355.85045 * 14 12 11 16 16 N 1.34776 * 120.00214 * 175.84517 * 14 12 11 17 17 C 1.46498 * 119.99754 * 179.97438 * 16 14 12 18 18 C 1.53010 * 109.46982 * 180.02562 * 17 16 14 19 19 H 1.08997 * 109.82245 * 59.29563 * 18 17 16 20 20 C 1.54376 * 109.83142 * 180.18658 * 18 17 16 21 21 C 1.55306 * 102.25408 * 140.86878 * 20 18 17 22 22 C 1.54943 * 100.93910 * 325.86761 * 21 20 18 23 23 H 1.08996 * 110.31365 * 277.42528 * 22 21 20 24 24 C 1.50703 * 110.30958 * 155.35895 * 22 21 20 25 25 N 1.34777 * 120.00185 * 64.99617 * 24 22 21 26 26 O 1.21286 * 120.00264 * 245.00240 * 24 22 21 27 27 O 1.43234 * 109.82623 * 298.41523 * 18 17 16 28 28 C 1.53001 * 117.50046 * 110.35340 * 9 7 2 29 29 C 1.53007 * 117.49944 * 179.01401 * 9 7 2 30 30 H 0.96993 * 119.99936 * 4.99989 * 1 2 3 31 31 H 1.09000 * 109.47016 * 185.42038 * 10 9 7 32 32 H 1.08995 * 109.47108 * 65.41317 * 10 9 7 33 33 H 0.97006 * 119.99993 * 4.86384 * 11 10 9 34 34 H 0.96996 * 119.99828 * 0.02562 * 16 14 12 35 35 H 1.09000 * 109.47873 * 300.00302 * 17 16 14 36 36 H 1.09001 * 109.47412 * 60.00741 * 17 16 14 37 37 H 1.09000 * 110.84897 * 259.06351 * 20 18 17 38 38 H 1.09004 * 110.84899 * 22.68236 * 20 18 17 39 39 H 1.09006 * 111.12260 * 83.78521 * 21 20 18 40 40 H 1.09000 * 111.12679 * 207.90438 * 21 20 18 41 41 H 0.96995 * 119.99964 * 0.02562 * 25 24 22 42 42 H 0.97003 * 120.00095 * 180.02562 * 25 24 22 43 43 H 1.09006 * 117.49997 * 215.00461 * 28 9 7 44 44 H 1.08995 * 117.49893 * 0.02562 * 28 9 7 45 45 H 1.08999 * 117.49569 * 359.97021 * 29 9 7 46 46 H 1.09000 * 117.49608 * 144.97731 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0836 -1.1945 0.0480 9 6 1.2527 -2.4982 -0.0688 10 6 -0.0872 -2.5268 0.6693 11 7 0.1147 -2.1252 2.0636 12 6 -0.9136 -2.1707 2.9337 13 8 -1.9799 -2.6361 2.5889 14 6 -0.7388 -1.6537 4.3249 15 8 0.3489 -1.2625 4.6947 16 7 -1.7890 -1.6218 5.1690 17 6 -1.6174 -1.1156 6.5329 18 6 -2.9531 -1.1883 7.2758 19 1 -3.3041 -2.2198 7.3049 20 6 -2.7828 -0.6521 8.7134 21 6 -4.1025 0.1377 8.9292 22 6 -4.3554 0.6833 7.5012 23 1 -3.7727 1.5890 7.3335 24 6 -5.8228 0.9618 7.3000 25 7 -6.4318 1.9224 8.0232 26 8 -6.4557 0.3215 6.4874 27 8 -3.9213 -0.3641 6.6163 28 6 1.3659 -3.3122 -1.3593 29 6 2.0757 -3.7879 -0.0892 30 1 -0.4850 0.8368 -0.0732 31 1 -0.4978 -3.5360 0.6378 32 1 -0.7812 -1.8370 0.1893 33 1 0.9885 -1.8264 2.3606 34 1 -2.6583 -1.9348 4.8735 35 1 -0.8779 -1.7224 7.0555 36 1 -1.2776 -0.0805 6.4963 37 1 -2.7006 -1.4726 9.4262 38 1 -1.9192 0.0097 8.7808 39 1 -4.9090 -0.5240 9.2455 40 1 -3.9619 0.9503 9.6418 41 1 -5.9255 2.4347 8.6729 42 1 -7.3763 2.1014 7.8939 43 1 0.4858 -3.8681 -1.6826 44 1 1.9845 -2.9046 -2.1588 45 1 3.1610 -3.6929 -0.0538 46 1 1.6627 -4.6566 0.4234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323639022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:53 Heat of formation + Delta-G solvation = -127.094797 kcal Electronic energy + Delta-G solvation = -29519.861711 eV Core-core repulsion = 25217.440682 eV Total energy + Delta-G solvation = -4302.421030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74230 -39.85651 -38.75264 -37.81588 -36.60699 -34.84079 -34.16898 -32.97600 -32.55572 -32.15006 -30.68126 -27.23423 -26.21266 -25.45200 -23.55785 -22.24103 -21.86304 -21.21172 -20.64859 -19.54377 -19.29886 -18.16358 -17.94897 -17.76672 -16.39212 -16.37622 -16.16819 -15.98613 -15.23282 -15.21434 -14.96883 -14.74670 -14.52500 -14.23074 -14.04978 -13.71632 -13.41477 -13.28382 -12.96986 -12.53572 -12.46638 -12.38985 -12.13495 -11.83741 -11.75092 -11.46646 -11.39777 -11.07630 -10.95997 -10.71498 -10.48743 -10.43017 -10.24788 -10.08851 -9.79650 -9.68601 -9.04044 -9.01196 -8.87241 -8.80962 -8.28351 -7.93968 -6.00929 -4.18797 2.12970 2.23995 2.70223 2.96721 3.25631 3.35194 3.37897 3.57244 3.86622 3.97420 4.20981 4.28730 4.32656 4.41655 4.55389 4.62807 4.79998 4.91411 4.97572 5.10199 5.15272 5.25739 5.35489 5.42201 5.49480 5.53845 5.76575 6.01857 6.30463 6.30978 6.41925 6.53205 6.56784 6.62842 6.69806 6.88288 6.91658 7.06230 7.26477 7.37425 7.54704 7.59539 7.89436 7.94705 8.16681 8.30763 8.51450 8.82838 8.96527 9.45188 10.90073 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.002530 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.481545 B =11064.468700 C =11579.133690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.073 3.927 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.494 4.494 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.161 3.839 11 N -0.643 5.643 12 C 0.495 3.505 13 O -0.548 6.548 14 C 0.509 3.491 15 O -0.526 6.526 16 N -0.703 5.703 17 C 0.111 3.889 18 C 0.065 3.935 19 H 0.095 0.905 20 C -0.144 4.144 21 C -0.144 4.144 22 C 0.060 3.940 23 H 0.100 0.900 24 C 0.515 3.485 25 N -0.854 5.854 26 O -0.516 6.516 27 O -0.339 6.339 28 C -0.196 4.196 29 C -0.211 4.211 30 H 0.263 0.737 31 H 0.030 0.970 32 H 0.119 0.881 33 H 0.411 0.589 34 H 0.416 0.584 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.401 0.599 42 H 0.405 0.595 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.672 2.780 22.041 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.532 4.532 8 H 0.081 0.919 9 C 0.032 3.968 10 C 0.038 3.962 11 N -0.291 5.291 12 C 0.274 3.726 13 O -0.429 6.429 14 C 0.291 3.709 15 O -0.402 6.402 16 N -0.357 5.357 17 C -0.013 4.013 18 C 0.007 3.993 19 H 0.113 0.887 20 C -0.182 4.182 21 C -0.182 4.182 22 C -0.001 4.001 23 H 0.118 0.882 24 C 0.299 3.701 25 N -0.421 5.421 26 O -0.390 6.390 27 O -0.257 6.257 28 C -0.235 4.235 29 C -0.248 4.248 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.137 0.863 33 H 0.248 0.752 34 H 0.253 0.747 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.229 0.771 42 H 0.236 0.764 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.081 2.318 21.278 23.251 hybrid contribution 0.429 1.366 0.355 1.475 sum -8.652 3.684 21.633 23.589 Atomic orbital electron populations 1.69841 1.05766 1.26802 1.48482 1.25009 0.94907 0.99275 0.93917 0.86461 0.80100 0.83395 0.77683 1.19663 1.20899 1.20864 1.20580 0.92742 0.88522 1.51326 0.91857 1.19229 0.92902 0.90107 0.94565 1.21296 0.98580 0.97446 0.78856 1.45564 1.12140 1.61152 1.10244 1.19704 0.85380 0.81780 0.85774 1.90686 1.26619 1.46811 1.78740 1.20640 0.84278 0.78935 0.87043 1.90721 1.25557 1.46394 1.77528 1.45602 1.13457 1.64447 1.12238 1.21805 0.96169 1.00767 0.82585 1.23137 0.88639 0.96185 0.91382 0.88729 1.23111 0.98212 1.01129 0.95796 1.23251 0.98587 1.00996 0.95345 1.22878 0.92568 0.94025 0.90638 0.88203 1.20483 0.89377 0.79710 0.80568 1.43758 1.14757 1.39671 1.43884 1.90817 1.66250 1.48152 1.33743 1.88699 1.58609 1.41591 1.36849 1.22947 1.01550 1.06392 0.92566 1.22966 0.98379 1.00100 1.03393 0.92670 0.95226 0.86325 0.75233 0.74695 0.89952 0.90747 0.88877 0.89288 0.89594 0.88784 0.77130 0.76394 0.91365 0.90105 0.90495 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.62 10.17 55.43 0.56 -23.06 16 2 C 0.07 1.91 5.31 -17.82 -0.09 1.81 16 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.49 -12.86 8.31 -34.44 -0.29 -13.15 16 8 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 9 C 0.03 0.79 2.06 -155.66 -0.32 0.47 16 10 C 0.16 3.89 4.63 -4.04 -0.02 3.87 16 11 N -0.64 -14.89 5.15 -60.73 -0.31 -15.20 16 12 C 0.49 10.95 7.88 -11.59 -0.09 10.86 16 13 O -0.55 -12.98 16.47 5.49 0.09 -12.89 16 14 C 0.51 9.91 7.89 -11.59 -0.09 9.81 16 15 O -0.53 -11.04 16.49 5.49 0.09 -10.95 16 16 N -0.70 -10.96 5.46 -60.73 -0.33 -11.29 16 17 C 0.11 1.28 5.23 -4.04 -0.02 1.26 16 18 C 0.06 0.59 3.59 -26.00 -0.09 0.50 16 19 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.14 -0.76 6.54 -24.79 -0.16 -0.92 16 21 C -0.14 -0.68 6.55 -24.48 -0.16 -0.84 16 22 C 0.06 0.50 3.87 -26.86 -0.10 0.40 16 23 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 24 C 0.52 5.13 7.46 -10.98 -0.08 5.04 16 25 N -0.85 -4.22 8.86 31.22 0.28 -3.94 16 26 O -0.52 -8.11 17.38 -13.80 -0.24 -8.35 16 27 O -0.34 -4.14 10.11 -54.58 -0.55 -4.69 16 28 C -0.20 -4.31 9.96 -26.69 -0.27 -4.57 16 29 C -0.21 -4.48 9.93 -26.69 -0.26 -4.75 16 30 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 31 H 0.03 0.70 8.05 -51.93 -0.42 0.28 16 32 H 0.12 3.22 5.90 -51.93 -0.31 2.91 16 33 H 0.41 9.65 7.43 -40.82 -0.30 9.35 16 34 H 0.42 6.53 7.88 -40.82 -0.32 6.20 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.40 7.85 -51.93 -0.41 -0.01 16 39 H 0.09 0.43 8.05 -51.93 -0.42 0.01 16 40 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.40 0.57 8.83 -40.82 -0.36 0.21 16 42 H 0.40 1.74 8.93 -40.82 -0.36 1.38 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 45 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 390.61 15.07 5.89 5.89 Total: -1.00 -35.03 390.61 -8.28 -43.31 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -6.67 Total: 15.60 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -2.06 Total: 9.80 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.20 Total: -53.49 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.61 Total: -36.88 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.03 -8.28 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323639022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.785 kcal (2) G-P(sol) polarization free energy of solvation -35.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds