Wall clock time and date at job start Tue Mar 31 2020 23:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99797 * 2 1 4 4 H 1.48502 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47595 * 300.00616 * 3 2 1 6 6 H 1.48505 * 109.46738 * 60.00381 * 3 2 1 7 7 C 1.37875 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99633 * 182.97437 * 7 2 1 9 9 C 1.50693 * 120.00075 * 2.97300 * 7 2 1 10 10 C 1.53001 * 115.54996 * 324.68271 * 9 7 2 11 11 N 1.46498 * 109.47093 * 305.41437 * 10 9 7 12 12 C 1.34776 * 120.00468 * 184.86618 * 11 10 9 13 13 O 1.21352 * 119.99534 * 5.40573 * 12 11 10 14 14 C 1.49446 * 120.00497 * 185.13280 * 12 11 10 15 15 O 1.21355 * 119.99998 * 355.85045 * 14 12 11 16 16 N 1.34776 * 120.00214 * 175.84517 * 14 12 11 17 17 C 1.46498 * 119.99754 * 179.97438 * 16 14 12 18 18 C 1.53010 * 109.46982 * 180.02562 * 17 16 14 19 19 H 1.08997 * 109.82245 * 59.29563 * 18 17 16 20 20 C 1.54376 * 109.83142 * 180.18658 * 18 17 16 21 21 C 1.55306 * 102.25408 * 140.86878 * 20 18 17 22 22 C 1.54943 * 100.93910 * 325.86761 * 21 20 18 23 23 H 1.08996 * 110.31365 * 277.42528 * 22 21 20 24 24 C 1.50703 * 110.30958 * 155.35895 * 22 21 20 25 25 N 1.34777 * 120.00185 * 64.99617 * 24 22 21 26 26 O 1.21286 * 120.00264 * 245.00240 * 24 22 21 27 27 O 1.43234 * 109.82623 * 298.41523 * 18 17 16 28 28 C 1.53001 * 117.50046 * 110.35340 * 9 7 2 29 29 C 1.53007 * 117.49944 * 179.01401 * 9 7 2 30 30 H 0.96993 * 119.99936 * 4.99989 * 1 2 3 31 31 H 1.09000 * 109.47016 * 185.42038 * 10 9 7 32 32 H 1.08995 * 109.47108 * 65.41317 * 10 9 7 33 33 H 0.97006 * 119.99993 * 4.86384 * 11 10 9 34 34 H 0.96996 * 119.99828 * 0.02562 * 16 14 12 35 35 H 1.09000 * 109.47873 * 300.00302 * 17 16 14 36 36 H 1.09001 * 109.47412 * 60.00741 * 17 16 14 37 37 H 1.09000 * 110.84897 * 259.06351 * 20 18 17 38 38 H 1.09004 * 110.84899 * 22.68236 * 20 18 17 39 39 H 1.09006 * 111.12260 * 83.78521 * 21 20 18 40 40 H 1.09000 * 111.12679 * 207.90438 * 21 20 18 41 41 H 0.96995 * 119.99964 * 0.02562 * 25 24 22 42 42 H 0.97003 * 120.00095 * 180.02562 * 25 24 22 43 43 H 1.09006 * 117.49997 * 215.00461 * 28 9 7 44 44 H 1.08995 * 117.49893 * 0.02562 * 28 9 7 45 45 H 1.08999 * 117.49569 * 359.97021 * 29 9 7 46 46 H 1.09000 * 117.49608 * 144.97731 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0836 -1.1945 0.0480 9 6 1.2527 -2.4982 -0.0688 10 6 -0.0872 -2.5268 0.6693 11 7 0.1147 -2.1252 2.0636 12 6 -0.9136 -2.1707 2.9337 13 8 -1.9799 -2.6361 2.5889 14 6 -0.7388 -1.6537 4.3249 15 8 0.3489 -1.2625 4.6947 16 7 -1.7890 -1.6218 5.1690 17 6 -1.6174 -1.1156 6.5329 18 6 -2.9531 -1.1883 7.2758 19 1 -3.3041 -2.2198 7.3049 20 6 -2.7828 -0.6521 8.7134 21 6 -4.1025 0.1377 8.9292 22 6 -4.3554 0.6833 7.5012 23 1 -3.7727 1.5890 7.3335 24 6 -5.8228 0.9618 7.3000 25 7 -6.4318 1.9224 8.0232 26 8 -6.4557 0.3215 6.4874 27 8 -3.9213 -0.3641 6.6163 28 6 1.3659 -3.3122 -1.3593 29 6 2.0757 -3.7879 -0.0892 30 1 -0.4850 0.8368 -0.0732 31 1 -0.4978 -3.5360 0.6378 32 1 -0.7812 -1.8370 0.1893 33 1 0.9885 -1.8264 2.3606 34 1 -2.6583 -1.9348 4.8735 35 1 -0.8779 -1.7224 7.0555 36 1 -1.2776 -0.0805 6.4963 37 1 -2.7006 -1.4726 9.4262 38 1 -1.9192 0.0097 8.7808 39 1 -4.9090 -0.5240 9.2455 40 1 -3.9619 0.9503 9.6418 41 1 -5.9255 2.4347 8.6729 42 1 -7.3763 2.1014 7.8939 43 1 0.4858 -3.8681 -1.6826 44 1 1.9845 -2.9046 -2.1588 45 1 3.1610 -3.6929 -0.0538 46 1 1.6627 -4.6566 0.4234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323639022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:52 Heat of formation + Delta-G solvation = -156.190246 kcal Electronic energy + Delta-G solvation = -29521.123384 eV Core-core repulsion = 25217.440682 eV Total energy + Delta-G solvation = -4303.682703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66664 -41.22342 -39.77291 -39.29624 -38.42797 -36.13137 -34.87682 -34.71733 -34.13083 -33.14803 -31.52645 -28.66991 -27.68950 -27.21446 -24.68609 -23.24615 -22.92182 -22.59483 -21.34194 -21.23443 -21.02695 -19.55214 -18.77574 -18.42946 -18.11251 -17.78953 -17.14130 -16.93941 -16.77292 -16.55450 -16.44469 -16.15914 -15.66639 -15.56949 -15.28748 -14.89280 -14.84656 -14.44752 -14.33299 -13.96861 -13.68174 -13.43579 -13.31910 -12.98565 -12.96169 -12.74564 -12.71304 -12.60687 -12.36718 -12.29155 -12.05023 -11.86353 -11.53648 -11.19615 -10.93421 -10.74536 -10.72602 -10.58191 -10.52780 -10.30963 -10.17138 -9.82291 -7.99367 -6.22338 0.48141 1.39884 1.45061 1.47895 1.53224 1.54074 2.14898 2.30042 2.40799 2.76022 2.99201 3.12035 3.37634 3.58469 3.61628 3.71462 3.83106 3.97655 4.07709 4.16602 4.23505 4.38216 4.50623 4.52800 4.58060 4.71574 4.76409 4.84667 4.85744 4.96465 4.99292 5.08555 5.15804 5.20530 5.27278 5.49061 5.58203 5.62172 5.77366 5.92997 5.93038 6.04870 6.34148 6.43787 6.55191 6.79232 6.88632 7.16794 7.30796 7.42867 8.88954 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.002530 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.481545 B =11064.468700 C =11579.133690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.033 3.967 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.288 1.288 7 C -0.502 4.502 8 H 0.059 0.941 9 C 0.000 4.000 10 C 0.171 3.829 11 N -0.646 5.646 12 C 0.488 3.512 13 O -0.569 6.569 14 C 0.512 3.488 15 O -0.545 6.545 16 N -0.688 5.688 17 C 0.106 3.894 18 C 0.063 3.937 19 H 0.095 0.905 20 C -0.135 4.135 21 C -0.131 4.131 22 C 0.050 3.950 23 H 0.117 0.883 24 C 0.510 3.490 25 N -0.827 5.827 26 O -0.588 6.588 27 O -0.382 6.382 28 C -0.191 4.191 29 C -0.188 4.188 30 H 0.258 0.742 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.409 0.591 34 H 0.416 0.584 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.421 0.579 42 H 0.410 0.590 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 3.346 24.621 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.168 4.168 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.215 1.215 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.000 4.000 10 C 0.048 3.952 11 N -0.293 5.293 12 C 0.269 3.731 13 O -0.450 6.450 14 C 0.293 3.707 15 O -0.423 6.423 16 N -0.340 5.340 17 C -0.017 4.017 18 C 0.005 3.995 19 H 0.113 0.887 20 C -0.173 4.173 21 C -0.168 4.168 22 C -0.011 4.011 23 H 0.135 0.865 24 C 0.295 3.705 25 N -0.394 5.394 26 O -0.467 6.467 27 O -0.301 6.301 28 C -0.229 4.229 29 C -0.225 4.225 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.245 0.755 34 H 0.252 0.748 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.151 0.849 41 H 0.253 0.747 42 H 0.242 0.758 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.333 2.926 23.934 25.512 hybrid contribution 0.139 1.200 -0.406 1.274 sum -8.194 4.126 23.528 25.253 Atomic orbital electron populations 1.70006 1.06732 1.26846 1.49600 1.25601 0.95487 1.01777 0.93975 0.85624 0.79321 0.80230 0.77195 1.18993 1.20774 1.21453 1.20767 0.92617 0.89619 1.50948 0.92316 1.19285 0.93404 0.90792 0.96547 1.21018 0.98228 0.96581 0.79360 1.45542 1.12300 1.61370 1.10087 1.20270 0.84743 0.81097 0.87012 1.90662 1.27213 1.47607 1.79546 1.20108 0.84970 0.79372 0.86271 1.90708 1.26234 1.47781 1.77562 1.45692 1.12208 1.62747 1.13351 1.22173 0.98458 1.00625 0.80423 1.23243 0.86685 0.96311 0.93226 0.88696 1.23147 0.98944 1.02046 0.93138 1.23291 0.98056 1.01926 0.93545 1.23189 0.91370 0.94077 0.92453 0.86521 1.20946 0.90119 0.79581 0.79868 1.43560 1.15117 1.37951 1.42750 1.90783 1.67806 1.51066 1.37039 1.88665 1.59353 1.42872 1.39216 1.22965 1.02098 1.05623 0.92251 1.22970 0.98525 0.98797 1.02247 0.93247 0.94941 0.89425 0.75504 0.74788 0.88215 0.90982 0.86707 0.87922 0.89882 0.84876 0.74684 0.75822 0.90171 0.90139 0.89748 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.44 10.17 21.45 0.22 -49.23 16 2 C 0.03 1.73 5.31 84.65 0.45 2.17 16 3 Si 0.95 42.92 29.54 68.60 2.03 44.94 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 7 C -0.50 -26.12 8.31 25.60 0.21 -25.91 16 8 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 9 C 0.00 0.02 2.06 -52.93 -0.11 -0.09 16 10 C 0.17 8.42 4.63 86.38 0.40 8.82 16 11 N -0.65 -30.46 5.15 -464.42 -2.39 -32.85 16 12 C 0.49 22.10 7.88 87.27 0.69 22.79 16 13 O -0.57 -27.62 16.47 -3.25 -0.05 -27.68 16 14 C 0.51 20.05 7.89 87.27 0.69 20.74 16 15 O -0.54 -22.81 16.49 -3.26 -0.05 -22.86 16 16 N -0.69 -21.40 5.46 -464.40 -2.54 -23.94 16 17 C 0.11 2.31 5.23 86.38 0.45 2.76 16 18 C 0.06 1.06 3.59 31.06 0.11 1.17 16 19 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 20 C -0.14 -0.95 6.54 31.85 0.21 -0.74 16 21 C -0.13 -0.78 6.55 32.05 0.21 -0.57 16 22 C 0.05 0.75 3.87 30.51 0.12 0.87 16 23 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 24 C 0.51 9.89 7.46 87.66 0.65 10.55 16 25 N -0.83 -6.74 8.86 -173.53 -1.54 -8.28 16 26 O -0.59 -19.24 17.38 15.46 0.27 -18.97 16 27 O -0.38 -9.22 10.11 -130.48 -1.32 -10.54 16 28 C -0.19 -8.19 9.96 30.62 0.30 -7.88 16 29 C -0.19 -7.70 9.93 30.62 0.30 -7.39 16 30 H 0.26 13.98 8.32 -92.71 -0.77 13.21 16 31 H 0.03 1.54 8.05 -2.39 -0.02 1.52 16 32 H 0.09 4.91 5.90 -2.39 -0.01 4.89 16 33 H 0.41 19.53 7.43 -92.70 -0.69 18.84 16 34 H 0.42 13.26 7.88 -92.71 -0.73 12.53 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.11 0.37 8.14 -2.39 -0.02 0.36 16 38 H 0.10 0.49 7.85 -2.38 -0.02 0.47 16 39 H 0.08 0.59 8.05 -2.38 -0.02 0.57 16 40 H 0.13 -0.22 8.14 -2.39 -0.02 -0.23 16 41 H 0.42 -0.07 8.83 -92.71 -0.82 -0.89 16 42 H 0.41 2.99 8.93 -92.71 -0.83 2.16 16 43 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 44 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 45 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -78.84 390.61 -2.69 -81.53 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -2.00 Total: 40.57 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 4.69 Total: 27.29 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -6.25 Total: -114.29 kcal Atomic # 8 Polarization: -78.89 SS G_CDS: -1.16 Total: -80.05 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -78.84 -2.69 -81.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323639022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.657 kcal (2) G-P(sol) polarization free energy of solvation -78.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds