Wall clock time and date at job start Tue Mar 31 2020 23:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48498 * 109.46900 * 274.55613 * 3 2 1 5 5 H 1.48501 * 109.47030 * 34.55613 * 3 2 1 6 6 H 1.48493 * 109.47153 * 154.55416 * 3 2 1 7 7 C 1.37876 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00656 * 354.02420 * 7 2 1 9 9 C 1.50702 * 119.99873 * 174.02813 * 7 2 1 10 10 C 1.52999 * 115.55477 * 93.62369 * 9 7 2 11 11 N 1.46504 * 109.46629 * 65.20431 * 10 9 7 12 12 C 1.34777 * 120.00041 * 185.22698 * 11 10 9 13 13 O 1.21352 * 119.99634 * 4.81966 * 12 11 10 14 14 C 1.49445 * 120.00346 * 184.81770 * 12 11 10 15 15 O 1.21359 * 119.99879 * 5.09696 * 14 12 11 16 16 N 1.34772 * 120.00205 * 185.09180 * 14 12 11 17 17 C 1.46508 * 120.00034 * 179.97438 * 16 14 12 18 18 C 1.52998 * 109.47277 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.82294 * 305.57396 * 18 17 16 20 20 C 1.54376 * 109.83391 * 184.58918 * 18 17 16 21 21 C 1.55305 * 102.25229 * 219.13397 * 20 18 17 22 22 C 1.54946 * 100.94352 * 34.13010 * 21 20 18 23 23 H 1.09003 * 110.30490 * 82.47497 * 22 21 20 24 24 C 1.50701 * 110.30601 * 204.63803 * 22 21 20 25 25 N 1.34773 * 120.00511 * 292.16809 * 24 22 21 26 26 O 1.21281 * 119.99534 * 112.17264 * 24 22 21 27 27 O 1.43240 * 109.82861 * 66.45391 * 18 17 16 28 28 C 1.53004 * 117.49795 * 239.30202 * 9 7 2 29 29 C 1.53004 * 117.49638 * 307.95960 * 9 7 2 30 30 H 0.97004 * 119.99903 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47295 * 185.20373 * 10 9 7 32 32 H 1.09001 * 109.47141 * 305.21378 * 10 9 7 33 33 H 0.97003 * 120.00298 * 5.23566 * 11 10 9 34 34 H 0.96993 * 120.00130 * 0.02562 * 16 14 12 35 35 H 1.08993 * 109.46955 * 300.00570 * 17 16 14 36 36 H 1.09007 * 109.46771 * 60.00379 * 17 16 14 37 37 H 1.09007 * 110.84275 * 337.32292 * 20 18 17 38 38 H 1.09001 * 110.85248 * 100.93683 * 20 18 17 39 39 H 1.08998 * 111.12208 * 276.20649 * 21 20 18 40 40 H 1.08999 * 111.15922 * 152.06775 * 21 20 18 41 41 H 0.97004 * 119.99502 * 359.97438 * 25 24 22 42 42 H 0.96998 * 120.00120 * 180.02562 * 25 24 22 43 43 H 1.08992 * 117.49784 * 214.99964 * 28 9 7 44 44 H 1.09000 * 117.49614 * 0.02562 * 28 9 7 45 45 H 1.09003 * 117.50059 * 359.97273 * 29 9 7 46 46 H 1.09000 * 117.50102 * 144.97273 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4003 2.1020 -1.3956 5 1 1.4981 2.6229 0.7942 6 1 3.5915 1.4143 0.6015 7 6 2.0044 -1.1941 0.0005 8 1 1.4689 -2.1268 0.0983 9 6 3.5053 -1.1977 -0.1353 10 6 4.2870 -1.2142 1.1799 11 7 4.0342 -2.4748 1.8824 12 6 4.5357 -2.6700 3.1180 13 8 5.1219 -1.7707 3.6839 14 6 4.3701 -3.9939 3.7912 15 8 3.8664 -4.9209 3.1913 16 7 4.7800 -4.1585 5.0644 17 6 4.6171 -5.4563 5.7245 18 6 5.1603 -5.3739 7.1525 19 1 6.1896 -5.0155 7.1364 20 6 5.0986 -6.7658 7.8174 21 6 4.6662 -6.4191 9.2682 22 6 3.7400 -5.2027 9.0164 23 1 2.7420 -5.5391 8.7355 24 6 3.6735 -4.3329 10.2452 25 7 3.0714 -4.7884 11.3616 26 8 4.1617 -3.2228 10.2294 27 8 4.3489 -4.4862 7.9305 28 6 4.1053 -1.9526 -1.3232 29 6 4.1105 -0.4219 -1.3069 30 1 -0.4850 0.8401 -0.0004 31 1 5.3527 -1.1224 0.9704 32 1 3.9660 -0.3800 1.8038 33 1 3.5059 -3.1689 1.4582 34 1 5.1823 -3.4176 5.5440 35 1 3.5598 -5.7196 5.7521 36 1 5.1668 -6.2172 5.1705 37 1 4.3538 -7.3955 7.3306 38 1 6.0781 -7.2439 7.8082 39 1 5.5253 -6.1392 9.8778 40 1 4.1171 -7.2437 9.7227 41 1 2.6805 -5.6761 11.3740 42 1 3.0282 -4.2283 12.1524 43 1 5.0568 -2.4610 -1.1677 44 1 3.4145 -2.4461 -2.0067 45 1 3.4231 0.0907 -1.9798 46 1 5.0653 0.0770 -1.1407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323639023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:56 Heat of formation + Delta-G solvation = -126.644392 kcal Electronic energy + Delta-G solvation = -29072.163525 eV Core-core repulsion = 24769.762026 eV Total energy + Delta-G solvation = -4302.401499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85776 -40.17996 -38.88617 -38.17116 -37.02599 -35.08899 -34.23124 -33.43474 -32.65488 -32.09630 -30.83296 -27.62262 -26.66312 -25.42070 -23.72621 -22.46835 -22.00885 -21.72409 -20.74401 -19.90847 -19.38296 -18.23600 -18.11340 -17.87893 -16.66295 -16.43671 -16.30437 -16.10491 -15.55563 -15.48999 -15.06003 -15.02449 -14.77215 -14.47730 -14.11696 -13.90076 -13.72888 -13.40566 -13.05033 -12.80683 -12.62165 -12.54004 -12.42835 -12.23951 -12.01976 -11.94737 -11.54624 -11.32801 -11.15172 -10.82836 -10.51935 -10.47828 -10.16662 -10.14822 -9.88378 -9.69308 -9.29905 -9.23857 -9.18234 -8.63743 -8.58450 -8.43772 -6.13833 -4.17950 1.77346 2.16274 2.57686 2.71401 3.29514 3.40936 3.45104 3.46944 3.58663 3.78820 3.98019 4.16579 4.22060 4.41345 4.45588 4.52967 4.70868 4.76084 4.84872 5.01124 5.03209 5.06057 5.15523 5.17048 5.30312 5.39879 5.64947 5.65423 6.02344 6.04431 6.14522 6.18407 6.27735 6.39844 6.43175 6.45528 6.69969 6.85310 6.85770 6.98372 7.09093 7.22779 7.68490 7.80658 7.82999 8.10011 8.42717 8.47732 8.87999 9.48947 10.97583 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.002260 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.550772 B =12388.358491 C =13234.695852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.079 3.921 3 Si 0.881 3.119 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.080 0.920 9 C -0.018 4.018 10 C 0.152 3.848 11 N -0.667 5.667 12 C 0.498 3.502 13 O -0.536 6.536 14 C 0.510 3.490 15 O -0.522 6.522 16 N -0.701 5.701 17 C 0.110 3.890 18 C 0.065 3.935 19 H 0.095 0.905 20 C -0.144 4.144 21 C -0.144 4.144 22 C 0.060 3.940 23 H 0.100 0.900 24 C 0.515 3.485 25 N -0.854 5.854 26 O -0.517 6.517 27 O -0.341 6.341 28 C -0.179 4.179 29 C -0.191 4.191 30 H 0.266 0.734 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.417 0.583 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.401 0.599 42 H 0.405 0.595 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.907 -17.246 20.391 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.124 4.124 3 Si 0.709 3.291 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.182 1.182 7 C -0.529 4.529 8 H 0.098 0.902 9 C -0.019 4.019 10 C 0.029 3.971 11 N -0.317 5.317 12 C 0.278 3.722 13 O -0.414 6.414 14 C 0.291 3.709 15 O -0.397 6.397 16 N -0.355 5.355 17 C -0.014 4.014 18 C 0.007 3.993 19 H 0.113 0.887 20 C -0.182 4.182 21 C -0.182 4.182 22 C -0.001 4.001 23 H 0.118 0.882 24 C 0.299 3.701 25 N -0.420 5.420 26 O -0.391 6.391 27 O -0.259 6.259 28 C -0.216 4.216 29 C -0.228 4.228 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.252 0.748 34 H 0.253 0.747 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.229 0.771 42 H 0.237 0.763 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.147 -16.222 20.059 27.722 hybrid contribution -0.044 0.574 0.401 0.701 sum 10.103 -15.648 20.460 27.669 Atomic orbital electron populations 1.69900 1.06421 1.27254 1.49388 1.24997 0.94608 0.99160 0.93634 0.86826 0.80861 0.83321 0.78134 1.20517 1.22044 1.18152 1.20192 0.86399 0.94791 1.51536 0.90226 1.19609 0.95701 1.01114 0.85471 1.21344 0.97194 0.84712 0.93815 1.45706 1.50946 1.19951 1.15116 1.19925 0.81392 0.87865 0.83058 1.90731 1.42893 1.43457 1.64369 1.20383 0.78782 0.89234 0.82460 1.90751 1.42108 1.42313 1.64533 1.45626 1.62187 1.14708 1.12982 1.21854 1.02555 0.85749 0.91219 1.23137 0.95742 0.90284 0.90173 0.88683 1.23106 1.04105 0.96555 0.94473 1.23252 0.99946 0.96898 0.98077 1.22854 0.99052 0.91069 0.87112 0.88206 1.20469 0.77732 0.87398 0.84534 1.43756 1.61574 1.21454 1.15224 1.90814 1.44857 1.20151 1.83249 1.88649 1.64354 1.33192 1.39697 1.22902 1.01028 0.93432 1.04224 1.22928 1.01245 0.94523 1.04143 0.92468 0.93279 0.90868 0.74783 0.74656 0.90395 0.89740 0.89226 0.88826 0.89575 0.88716 0.77083 0.76348 0.90801 0.89190 0.89032 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 2 C 0.08 2.24 5.46 -17.82 -0.10 2.14 16 3 Si 0.88 21.68 24.73 -169.99 -4.20 17.48 16 4 H -0.28 -6.68 7.10 56.52 0.40 -6.28 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.05 5.96 56.52 0.34 -5.71 16 7 C -0.49 -13.28 9.33 -34.44 -0.32 -13.60 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 9 C -0.02 -0.40 0.83 -155.66 -0.13 -0.53 16 10 C 0.15 3.23 5.23 -4.04 -0.02 3.21 16 11 N -0.67 -13.25 5.44 -60.73 -0.33 -13.58 16 12 C 0.50 9.49 7.88 -11.59 -0.09 9.40 16 13 O -0.54 -11.15 16.46 5.50 0.09 -11.06 16 14 C 0.51 8.50 7.89 -11.59 -0.09 8.41 16 15 O -0.52 -9.48 16.50 5.49 0.09 -9.39 16 16 N -0.70 -9.32 5.52 -60.73 -0.34 -9.65 16 17 C 0.11 1.07 5.21 -4.04 -0.02 1.05 16 18 C 0.06 0.50 3.56 -26.01 -0.09 0.41 16 19 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 20 C -0.14 -0.60 6.54 -24.79 -0.16 -0.76 16 21 C -0.14 -0.55 6.56 -24.48 -0.16 -0.71 16 22 C 0.06 0.44 3.86 -26.86 -0.10 0.33 16 23 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 24 C 0.52 4.67 7.45 -10.99 -0.08 4.59 16 25 N -0.85 -3.61 8.87 31.22 0.28 -3.33 16 26 O -0.52 -7.66 17.39 -13.77 -0.24 -7.90 16 27 O -0.34 -3.71 10.24 -54.56 -0.56 -4.27 16 28 C -0.18 -3.49 9.96 -26.69 -0.27 -3.76 16 29 C -0.19 -3.94 7.41 -26.69 -0.20 -4.14 16 30 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.07 1.70 7.17 -51.93 -0.37 1.33 16 33 H 0.42 8.17 7.96 -40.82 -0.32 7.84 16 34 H 0.42 5.53 7.95 -40.82 -0.32 5.21 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.29 7.85 -51.92 -0.41 -0.12 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.09 0.37 8.05 -51.93 -0.42 -0.05 16 40 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 41 H 0.40 0.29 8.83 -40.82 -0.36 -0.08 16 42 H 0.41 1.49 8.93 -40.82 -0.36 1.12 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 45 H 0.09 1.99 6.85 -51.93 -0.36 1.64 16 46 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -37.34 387.77 -7.21 -44.54 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -6.78 Total: 11.41 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.84 Total: 6.05 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.38 Total: -52.71 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.62 Total: -32.61 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.20 Total: 17.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.34 -7.21 -44.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323639023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.102 kcal (2) G-P(sol) polarization free energy of solvation -37.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds