Wall clock time and date at job start Tue Mar 31 2020 23:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48498 * 109.46900 * 274.55613 * 3 2 1 5 5 H 1.48501 * 109.47030 * 34.55613 * 3 2 1 6 6 H 1.48493 * 109.47153 * 154.55416 * 3 2 1 7 7 C 1.37876 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00656 * 354.02420 * 7 2 1 9 9 C 1.50702 * 119.99873 * 174.02813 * 7 2 1 10 10 C 1.52999 * 115.55477 * 93.62369 * 9 7 2 11 11 N 1.46504 * 109.46629 * 65.20431 * 10 9 7 12 12 C 1.34777 * 120.00041 * 185.22698 * 11 10 9 13 13 O 1.21352 * 119.99634 * 4.81966 * 12 11 10 14 14 C 1.49445 * 120.00346 * 184.81770 * 12 11 10 15 15 O 1.21359 * 119.99879 * 5.09696 * 14 12 11 16 16 N 1.34772 * 120.00205 * 185.09180 * 14 12 11 17 17 C 1.46508 * 120.00034 * 179.97438 * 16 14 12 18 18 C 1.52998 * 109.47277 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.82294 * 305.57396 * 18 17 16 20 20 C 1.54376 * 109.83391 * 184.58918 * 18 17 16 21 21 C 1.55305 * 102.25229 * 219.13397 * 20 18 17 22 22 C 1.54946 * 100.94352 * 34.13010 * 21 20 18 23 23 H 1.09003 * 110.30490 * 82.47497 * 22 21 20 24 24 C 1.50701 * 110.30601 * 204.63803 * 22 21 20 25 25 N 1.34773 * 120.00511 * 292.16809 * 24 22 21 26 26 O 1.21281 * 119.99534 * 112.17264 * 24 22 21 27 27 O 1.43240 * 109.82861 * 66.45391 * 18 17 16 28 28 C 1.53004 * 117.49795 * 239.30202 * 9 7 2 29 29 C 1.53004 * 117.49638 * 307.95960 * 9 7 2 30 30 H 0.97004 * 119.99903 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47295 * 185.20373 * 10 9 7 32 32 H 1.09001 * 109.47141 * 305.21378 * 10 9 7 33 33 H 0.97003 * 120.00298 * 5.23566 * 11 10 9 34 34 H 0.96993 * 120.00130 * 0.02562 * 16 14 12 35 35 H 1.08993 * 109.46955 * 300.00570 * 17 16 14 36 36 H 1.09007 * 109.46771 * 60.00379 * 17 16 14 37 37 H 1.09007 * 110.84275 * 337.32292 * 20 18 17 38 38 H 1.09001 * 110.85248 * 100.93683 * 20 18 17 39 39 H 1.08998 * 111.12208 * 276.20649 * 21 20 18 40 40 H 1.08999 * 111.15922 * 152.06775 * 21 20 18 41 41 H 0.97004 * 119.99502 * 359.97438 * 25 24 22 42 42 H 0.96998 * 120.00120 * 180.02562 * 25 24 22 43 43 H 1.08992 * 117.49784 * 214.99964 * 28 9 7 44 44 H 1.09000 * 117.49614 * 0.02562 * 28 9 7 45 45 H 1.09003 * 117.50059 * 359.97273 * 29 9 7 46 46 H 1.09000 * 117.50102 * 144.97273 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4003 2.1020 -1.3956 5 1 1.4981 2.6229 0.7942 6 1 3.5915 1.4143 0.6015 7 6 2.0044 -1.1941 0.0005 8 1 1.4689 -2.1268 0.0983 9 6 3.5053 -1.1977 -0.1353 10 6 4.2870 -1.2142 1.1799 11 7 4.0342 -2.4748 1.8824 12 6 4.5357 -2.6700 3.1180 13 8 5.1219 -1.7707 3.6839 14 6 4.3701 -3.9939 3.7912 15 8 3.8664 -4.9209 3.1913 16 7 4.7800 -4.1585 5.0644 17 6 4.6171 -5.4563 5.7245 18 6 5.1603 -5.3739 7.1525 19 1 6.1896 -5.0155 7.1364 20 6 5.0986 -6.7658 7.8174 21 6 4.6662 -6.4191 9.2682 22 6 3.7400 -5.2027 9.0164 23 1 2.7420 -5.5391 8.7355 24 6 3.6735 -4.3329 10.2452 25 7 3.0714 -4.7884 11.3616 26 8 4.1617 -3.2228 10.2294 27 8 4.3489 -4.4862 7.9305 28 6 4.1053 -1.9526 -1.3232 29 6 4.1105 -0.4219 -1.3069 30 1 -0.4850 0.8401 -0.0004 31 1 5.3527 -1.1224 0.9704 32 1 3.9660 -0.3800 1.8038 33 1 3.5059 -3.1689 1.4582 34 1 5.1823 -3.4176 5.5440 35 1 3.5598 -5.7196 5.7521 36 1 5.1668 -6.2172 5.1705 37 1 4.3538 -7.3955 7.3306 38 1 6.0781 -7.2439 7.8082 39 1 5.5253 -6.1392 9.8778 40 1 4.1171 -7.2437 9.7227 41 1 2.6805 -5.6761 11.3740 42 1 3.0282 -4.2283 12.1524 43 1 5.0568 -2.4610 -1.1677 44 1 3.4145 -2.4461 -2.0067 45 1 3.4231 0.0907 -1.9798 46 1 5.0653 0.0770 -1.1407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323639023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:55 Heat of formation + Delta-G solvation = -159.962010 kcal Electronic energy + Delta-G solvation = -29073.608285 eV Core-core repulsion = 24769.762026 eV Total energy + Delta-G solvation = -4303.846259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.76220 -41.28029 -39.88493 -39.35823 -38.69788 -36.22507 -34.99583 -34.83007 -34.21096 -33.15166 -31.55203 -29.05969 -27.87698 -27.18479 -24.76603 -23.44464 -23.18846 -22.61013 -21.36327 -21.34979 -21.02125 -19.58692 -18.77427 -18.44424 -18.29410 -17.87415 -17.23243 -16.96056 -16.91510 -16.64903 -16.55928 -16.25836 -15.67969 -15.51732 -15.50404 -14.92793 -14.82135 -14.71336 -14.47442 -14.26166 -13.98142 -13.78398 -13.41511 -13.11519 -12.97991 -12.85301 -12.71402 -12.68589 -12.39433 -12.18338 -11.96435 -11.86155 -11.64280 -11.19692 -10.97273 -10.84538 -10.72411 -10.65666 -10.54731 -10.37234 -10.33318 -10.07658 -8.31328 -6.38073 0.35317 1.32098 1.35327 1.40426 1.51256 1.52187 2.13901 2.16181 2.35749 2.62387 2.99289 3.02596 3.23895 3.38160 3.52238 3.62267 3.83777 3.97796 3.98317 4.07843 4.17586 4.34216 4.38139 4.38915 4.45840 4.52990 4.57481 4.72401 4.84638 4.86481 4.86669 4.99817 5.09021 5.12203 5.21123 5.24541 5.30413 5.49422 5.68066 5.77460 5.92542 5.95463 6.26521 6.38456 6.44142 6.70455 6.73195 6.96102 7.30804 7.31955 8.83891 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.002260 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.550772 B =12388.358491 C =13234.695852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.022 3.978 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.304 1.304 6 H -0.237 1.237 7 C -0.484 4.484 8 H 0.039 0.961 9 C -0.045 4.045 10 C 0.160 3.840 11 N -0.671 5.671 12 C 0.496 3.504 13 O -0.555 6.555 14 C 0.513 3.487 15 O -0.541 6.541 16 N -0.687 5.687 17 C 0.106 3.894 18 C 0.063 3.937 19 H 0.095 0.905 20 C -0.135 4.135 21 C -0.132 4.132 22 C 0.051 3.949 23 H 0.119 0.881 24 C 0.510 3.490 25 N -0.828 5.828 26 O -0.588 6.588 27 O -0.382 6.382 28 C -0.155 4.155 29 C -0.185 4.185 30 H 0.265 0.735 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.415 0.585 34 H 0.417 0.583 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.421 0.579 42 H 0.410 0.590 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.085 -19.138 21.189 31.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.231 1.231 6 H -0.160 1.160 7 C -0.522 4.522 8 H 0.057 0.943 9 C -0.046 4.046 10 C 0.036 3.964 11 N -0.321 5.321 12 C 0.276 3.724 13 O -0.435 6.435 14 C 0.294 3.706 15 O -0.418 6.418 16 N -0.340 5.340 17 C -0.017 4.017 18 C 0.005 3.995 19 H 0.113 0.887 20 C -0.173 4.173 21 C -0.169 4.169 22 C -0.010 4.010 23 H 0.137 0.863 24 C 0.294 3.706 25 N -0.394 5.394 26 O -0.468 6.468 27 O -0.301 6.301 28 C -0.192 4.192 29 C -0.223 4.223 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.252 0.748 34 H 0.253 0.747 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.150 0.850 41 H 0.253 0.747 42 H 0.241 0.759 43 H 0.125 0.875 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.328 -18.198 20.908 30.336 hybrid contribution -0.786 1.033 0.239 1.320 sum 11.542 -17.166 21.147 29.582 Atomic orbital electron populations 1.70043 1.08294 1.28007 1.52153 1.25821 0.95204 1.02828 0.93775 0.85931 0.80330 0.78857 0.78781 1.18950 1.23144 1.15957 1.20366 0.89151 0.92988 1.49694 0.94276 1.19453 0.93137 1.04883 0.87176 1.21150 0.98185 0.84472 0.92569 1.45726 1.51195 1.19580 1.15597 1.20378 0.80575 0.88730 0.82670 1.90714 1.43684 1.44416 1.64685 1.19940 0.79356 0.87928 0.83413 1.90744 1.43514 1.42362 1.65196 1.45734 1.60328 1.16184 1.11713 1.22180 1.02856 0.84114 0.92509 1.23245 0.95030 0.92367 0.88843 0.88730 1.23143 1.05810 0.94319 0.94030 1.23289 0.99342 0.96227 0.98088 1.23154 1.00662 0.91622 0.85530 0.86324 1.20970 0.76967 0.86696 0.85928 1.43576 1.59565 1.22266 1.14031 1.90779 1.48305 1.23105 1.84567 1.88614 1.65028 1.35472 1.41019 1.22928 1.01788 0.93176 1.01289 1.23013 1.01945 0.95381 1.01947 0.92614 0.90742 0.93342 0.74830 0.74664 0.90733 0.87967 0.87750 0.86833 0.90110 0.84978 0.74677 0.75857 0.87517 0.89843 0.90314 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 2 C 0.02 1.25 5.46 84.65 0.46 1.71 16 3 Si 0.94 44.76 24.73 68.60 1.70 46.45 16 4 H -0.26 -11.93 7.10 99.48 0.71 -11.22 16 5 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 6 H -0.24 -10.43 5.96 99.48 0.59 -9.83 16 7 C -0.48 -26.73 9.33 25.60 0.24 -26.49 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 9 C -0.05 -1.98 0.83 -52.92 -0.04 -2.02 16 10 C 0.16 6.56 5.23 86.38 0.45 7.02 16 11 N -0.67 -26.47 5.44 -464.40 -2.53 -29.00 16 12 C 0.50 18.81 7.88 87.27 0.69 19.50 16 13 O -0.56 -22.98 16.46 -3.25 -0.05 -23.03 16 14 C 0.51 16.93 7.89 87.27 0.69 17.62 16 15 O -0.54 -19.43 16.50 -3.27 -0.05 -19.48 16 16 N -0.69 -17.92 5.52 -464.40 -2.56 -20.48 16 17 C 0.11 1.91 5.21 86.38 0.45 2.36 16 18 C 0.06 0.88 3.56 31.06 0.11 0.99 16 19 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 20 C -0.14 -0.67 6.54 31.85 0.21 -0.46 16 21 C -0.13 -0.59 6.56 32.05 0.21 -0.38 16 22 C 0.05 0.66 3.86 30.51 0.12 0.78 16 23 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 24 C 0.51 9.03 7.45 87.66 0.65 9.68 16 25 N -0.83 -5.72 8.87 -173.54 -1.54 -7.26 16 26 O -0.59 -18.19 17.39 15.44 0.27 -17.92 16 27 O -0.38 -8.20 10.24 -130.50 -1.34 -9.53 16 28 C -0.15 -5.65 9.96 30.62 0.30 -5.34 16 29 C -0.19 -7.11 7.41 30.62 0.23 -6.89 16 30 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.07 2.69 8.09 -2.39 -0.02 2.67 16 32 H 0.05 2.22 7.17 -2.39 -0.02 2.20 16 33 H 0.42 16.43 7.96 -92.71 -0.74 15.69 16 34 H 0.42 11.06 7.95 -92.71 -0.74 10.32 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 36 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.10 0.26 7.85 -2.38 -0.02 0.24 16 38 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.08 0.49 8.05 -2.39 -0.02 0.47 16 40 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.42 -0.56 8.83 -92.71 -0.82 -1.38 16 42 H 0.41 2.55 8.93 -92.71 -0.83 1.72 16 43 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.08 3.25 6.85 -2.39 -0.02 3.23 16 46 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -85.88 387.77 -3.22 -89.10 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -2.18 Total: 31.93 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 4.77 Total: 18.08 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -6.33 Total: -115.60 kcal Atomic # 8 Polarization: -68.79 SS G_CDS: -1.18 Total: -69.97 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.70 Total: 46.45 kcal Total: -85.88 -3.22 -89.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323639023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.859 kcal (2) G-P(sol) polarization free energy of solvation -85.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds