Wall clock time and date at job start Tue Mar 31 2020 22:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00105 * 2 1 4 4 N 1.46896 * 109.47171 * 124.73982 * 3 2 1 5 5 C 1.46900 * 111.00260 * 199.64192 * 4 3 2 6 6 C 1.50698 * 109.46641 * 66.04809 * 5 4 3 7 7 H 1.08000 * 120.00489 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99905 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99976 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.48510 * 109.47106 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47267 * 119.99572 * 10 8 6 13 13 H 1.48499 * 109.47428 * 239.99919 * 10 8 6 14 14 C 1.46903 * 110.99863 * 75.69035 * 4 3 2 15 15 N 1.46498 * 109.47309 * 199.44876 * 14 4 3 16 16 N 1.40173 * 126.34809 * 83.67803 * 15 14 4 17 17 C 1.29418 * 108.13548 * 179.97438 * 16 15 14 18 18 C 1.50693 * 125.58597 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47495 * 90.01721 * 18 17 16 20 20 C 1.50693 * 109.47495 * 179.97438 * 19 18 17 21 21 N 1.34773 * 120.00289 * 180.02562 * 20 19 18 22 22 O 1.21288 * 119.99832 * 0.02562 * 20 19 18 23 23 N 1.37316 * 108.82943 * 0.22369 * 17 16 15 24 24 C 1.46507 * 125.82512 * 179.75709 * 23 17 16 25 25 C 1.34814 * 108.34667 * 359.62739 * 23 17 16 26 26 S 1.71200 * 126.30319 * 180.11992 * 25 23 17 27 27 H 1.08002 * 119.99638 * 0.02562 * 1 2 3 28 28 H 1.07991 * 120.00357 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99638 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46944 * 4.73993 * 3 2 1 31 31 H 1.09001 * 109.47045 * 244.74499 * 3 2 1 32 32 H 1.08992 * 109.47371 * 186.04655 * 5 4 3 33 33 H 1.08999 * 109.47439 * 306.05060 * 5 4 3 34 34 H 0.96999 * 120.00198 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.47110 * 79.45432 * 14 4 3 36 36 H 1.09001 * 109.47275 * 319.45688 * 14 4 3 37 37 H 1.09004 * 109.47344 * 330.02180 * 18 17 16 38 38 H 1.08998 * 109.47504 * 210.02317 * 18 17 16 39 39 H 1.09004 * 109.46450 * 59.99911 * 19 18 17 40 40 H 1.08998 * 109.47231 * 300.00763 * 19 18 17 41 41 H 0.96997 * 119.99951 * 0.02562 * 21 20 19 42 42 H 0.97004 * 120.00067 * 179.97438 * 21 20 19 43 43 H 1.08996 * 109.46940 * 90.00350 * 24 23 17 44 44 H 1.09001 * 109.46666 * 209.99909 * 24 23 17 45 45 H 1.08993 * 109.46921 * 329.99911 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9919 1.3345 1.1381 5 6 3.3929 2.7118 1.4549 6 6 2.1958 3.4825 1.9487 7 1 1.2334 2.9976 2.0205 8 6 2.3291 4.8067 2.3089 9 7 3.5011 5.3970 2.2220 10 14 0.8454 5.7619 2.9217 11 1 -0.3461 4.8754 2.9275 12 1 1.1054 6.2496 4.3000 13 1 0.5973 6.9196 2.0255 14 6 4.1662 0.4901 0.8815 15 7 4.8209 0.1652 2.1511 16 7 4.4674 -0.8705 3.0270 17 6 5.2768 -0.8384 4.0363 18 6 5.2487 -1.7791 5.2133 19 6 6.1373 -2.9896 4.9201 20 6 6.1097 -3.9300 6.0973 21 7 6.8243 -5.0722 6.0644 22 8 5.4442 -3.6589 7.0745 23 7 6.1620 0.1968 3.8618 24 6 7.2355 0.5721 4.7855 25 6 5.8765 0.8070 2.6941 26 16 6.6976 2.1526 2.0263 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3582 2.1319 0.0849 31 1 2.6249 1.4005 -0.9294 32 1 4.1605 2.6978 2.2286 33 1 3.7887 3.1902 0.5590 34 1 3.5948 6.3287 2.4751 35 1 4.8653 1.0254 0.2388 36 1 3.8515 -0.4300 0.3890 37 1 4.2257 -2.1130 5.3871 38 1 5.6180 -1.2633 6.0996 39 1 7.1603 -2.6556 4.7463 40 1 5.7680 -3.5054 4.0338 41 1 7.3568 -5.2887 5.2831 42 1 6.8068 -5.6773 6.8223 43 1 8.1453 0.0320 4.5237 44 1 7.4167 1.6446 4.7153 45 1 6.9430 0.3189 5.8045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326111689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:32 Heat of formation + Delta-G solvation = 84.886096 kcal Electronic energy + Delta-G solvation = -27435.477523 eV Core-core repulsion = 23617.294297 eV Total energy + Delta-G solvation = -3818.183226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.48825 -39.93339 -37.49244 -35.24833 -34.34271 -34.09840 -33.16831 -32.36150 -31.03834 -28.41745 -27.13677 -26.50038 -25.20631 -24.01653 -22.70793 -21.37352 -20.75518 -20.51674 -19.31058 -17.93856 -17.79856 -17.11749 -16.66579 -16.62939 -16.26105 -15.80262 -15.54836 -14.97715 -14.81979 -14.54190 -14.27028 -13.87236 -13.70290 -13.55960 -13.30852 -12.97767 -12.63038 -12.39073 -12.29753 -11.99957 -11.78047 -11.61661 -11.47221 -11.19899 -10.82039 -10.79251 -10.68273 -10.61538 -10.41059 -10.28090 -10.18386 -10.13136 -9.74745 -9.19026 -8.96877 -8.37974 -7.52742 -7.18310 -6.93715 -5.88884 -3.93170 1.40625 1.72768 1.76600 2.15878 2.53471 2.69056 2.76980 3.10215 3.35486 3.42907 3.47032 4.07102 4.22841 4.36314 4.47684 4.52692 4.66741 4.76528 4.92779 5.00203 5.07598 5.24089 5.34887 5.35291 5.43560 5.46104 5.55665 5.61183 5.62256 5.78411 5.96327 6.21016 6.27025 6.34697 6.46512 6.65110 6.79792 6.97596 7.20406 7.25916 7.38918 7.47163 7.76366 7.81980 8.09679 8.18599 8.52848 9.13075 9.69137 11.19327 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.003365 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.138310 B = 8319.457706 C = 9031.288478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.137 4.137 3 C 0.090 3.910 4 N -0.544 5.544 5 C 0.189 3.811 6 C -0.516 4.516 7 H 0.060 0.940 8 C 0.060 3.940 9 N -0.880 5.880 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.303 3.697 15 N -0.355 5.355 16 N -0.258 5.258 17 C 0.252 3.748 18 C -0.022 4.022 19 C -0.139 4.139 20 C 0.521 3.479 21 N -0.856 5.856 22 O -0.539 6.539 23 N -0.499 5.499 24 C 0.083 3.917 25 C 0.462 3.538 26 S -0.559 6.559 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.000 1.000 34 H 0.259 0.741 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.403 0.597 42 H 0.403 0.597 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.343 -22.219 3.875 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.156 4.156 3 C -0.037 4.037 4 N -0.269 5.269 5 C 0.064 3.936 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.143 4.143 9 N -0.518 5.518 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 C 0.092 3.908 15 N -0.148 5.148 16 N -0.078 5.078 17 C -0.028 4.028 18 C -0.063 4.063 19 C -0.181 4.181 20 C 0.306 3.694 21 N -0.420 5.420 22 O -0.415 6.415 23 N -0.201 5.201 24 C -0.059 4.059 25 C 0.103 3.897 26 S -0.431 6.431 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.231 0.769 42 H 0.234 0.766 43 H 0.100 0.900 44 H 0.127 0.873 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.331 -21.506 3.914 23.056 hybrid contribution 0.034 0.286 0.367 0.467 sum 7.365 -21.220 4.280 22.866 Atomic orbital electron populations 1.23712 0.95925 1.01334 1.02237 1.22965 0.96040 0.98195 0.98362 1.21144 0.95549 0.96179 0.90854 1.61962 1.12278 1.15326 1.37354 1.20064 0.97035 0.79708 0.96757 1.21125 0.95256 0.95035 1.44109 0.92174 1.24967 0.95706 0.97661 0.95963 1.70037 1.22347 1.11824 1.47623 0.86570 0.83167 0.79956 0.78482 1.19808 1.21134 1.21085 1.22208 0.92422 0.98982 0.77139 1.49481 1.23553 1.22561 1.19169 1.77139 1.19850 1.09935 1.00843 1.24518 0.88909 0.91634 0.97743 1.19930 1.03937 0.91408 0.90980 1.21631 1.02632 0.95673 0.98130 1.20463 0.78469 0.81958 0.88511 1.43864 1.51231 1.23703 1.23195 1.90804 1.41289 1.74738 1.34652 1.46011 1.29428 1.26032 1.18678 1.22140 0.87303 1.05277 0.91196 1.23939 0.88690 0.92077 0.84980 1.93535 1.60435 1.17177 1.71957 0.88482 0.89187 0.88401 0.88065 0.94513 0.93089 0.98210 0.93086 0.89202 0.88498 0.86699 0.87815 0.88184 0.87559 0.76895 0.76621 0.90004 0.87261 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 14.32 29.01 0.42 -2.44 16 2 C -0.14 -2.16 9.33 -36.03 -0.34 -2.50 16 3 C 0.09 1.70 5.24 -4.98 -0.03 1.68 16 4 N -0.54 -11.78 4.52 -241.43 -1.09 -12.87 16 5 C 0.19 5.06 4.50 -4.98 -0.02 5.03 16 6 C -0.52 -14.92 8.23 -34.44 -0.28 -15.20 16 7 H 0.06 1.73 7.31 -52.49 -0.38 1.35 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.88 -27.31 13.29 55.43 0.74 -26.58 16 10 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.30 5.60 5.88 -63.31 -0.37 5.23 16 15 N -0.35 -6.54 3.68 -64.99 -0.24 -6.78 16 16 N -0.26 -4.11 12.53 32.97 0.41 -3.70 16 17 C 0.25 3.24 7.24 -154.19 -1.12 2.12 16 18 C -0.02 -0.19 4.82 -27.88 -0.13 -0.33 16 19 C -0.14 -0.78 5.68 -27.88 -0.16 -0.94 16 20 C 0.52 3.57 8.10 -10.99 -0.09 3.49 16 21 N -0.86 -2.84 8.87 31.22 0.28 -2.57 16 22 O -0.54 -6.14 16.82 5.55 0.09 -6.05 16 23 N -0.50 -7.13 3.14 -121.97 -0.38 -7.51 16 24 C 0.08 0.83 10.70 59.85 0.64 1.47 16 25 C 0.46 8.74 7.02 -86.74 -0.61 8.13 16 26 S -0.56 -12.66 27.98 -107.50 -3.01 -15.67 16 27 H 0.10 1.47 7.84 -52.49 -0.41 1.06 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.10 1.39 7.28 -52.49 -0.38 1.01 16 30 H 0.10 2.14 6.23 -51.93 -0.32 1.81 16 31 H 0.04 0.64 8.00 -51.93 -0.42 0.23 16 32 H 0.05 1.50 5.44 -51.93 -0.28 1.22 16 33 H 0.00 0.00 8.12 -51.93 -0.42 -0.42 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.09 1.74 7.36 -51.93 -0.38 1.36 16 36 H 0.10 1.49 6.81 -51.93 -0.35 1.13 16 37 H 0.11 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.10 0.81 7.01 -51.93 -0.36 0.44 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.40 0.20 8.83 -40.82 -0.36 -0.16 16 42 H 0.40 1.13 8.93 -40.82 -0.36 0.76 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.11 1.34 7.64 -51.93 -0.40 0.94 16 45 H 0.09 0.64 7.03 -51.93 -0.37 0.27 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -39.95 390.95 -10.97 -50.93 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.45 Total: 0.17 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -2.19 Total: 7.40 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.29 Total: -60.00 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: 0.09 Total: -6.05 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: -12.66 SS G_CDS: -3.01 Total: -15.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.95 -10.97 -50.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326111689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.812 kcal (2) G-P(sol) polarization free energy of solvation -39.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds