Wall clock time and date at job start Tue Mar 31 2020 22:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00105 * 2 1 4 4 N 1.46896 * 109.47171 * 124.73982 * 3 2 1 5 5 C 1.46900 * 111.00260 * 199.64192 * 4 3 2 6 6 C 1.50698 * 109.46641 * 66.04809 * 5 4 3 7 7 H 1.08000 * 120.00489 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99905 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99976 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.48510 * 109.47106 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47267 * 119.99572 * 10 8 6 13 13 H 1.48499 * 109.47428 * 239.99919 * 10 8 6 14 14 C 1.46903 * 110.99863 * 75.69035 * 4 3 2 15 15 N 1.46498 * 109.47309 * 199.44876 * 14 4 3 16 16 N 1.40173 * 126.34809 * 83.67803 * 15 14 4 17 17 C 1.29418 * 108.13548 * 179.97438 * 16 15 14 18 18 C 1.50693 * 125.58597 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47495 * 90.01721 * 18 17 16 20 20 C 1.50693 * 109.47495 * 179.97438 * 19 18 17 21 21 N 1.34773 * 120.00289 * 180.02562 * 20 19 18 22 22 O 1.21288 * 119.99832 * 0.02562 * 20 19 18 23 23 N 1.37316 * 108.82943 * 0.22369 * 17 16 15 24 24 C 1.46507 * 125.82512 * 179.75709 * 23 17 16 25 25 C 1.34814 * 108.34667 * 359.62739 * 23 17 16 26 26 S 1.71200 * 126.30319 * 180.11992 * 25 23 17 27 27 H 1.08002 * 119.99638 * 0.02562 * 1 2 3 28 28 H 1.07991 * 120.00357 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99638 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46944 * 4.73993 * 3 2 1 31 31 H 1.09001 * 109.47045 * 244.74499 * 3 2 1 32 32 H 1.08992 * 109.47371 * 186.04655 * 5 4 3 33 33 H 1.08999 * 109.47439 * 306.05060 * 5 4 3 34 34 H 0.96999 * 120.00198 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.47110 * 79.45432 * 14 4 3 36 36 H 1.09001 * 109.47275 * 319.45688 * 14 4 3 37 37 H 1.09004 * 109.47344 * 330.02180 * 18 17 16 38 38 H 1.08998 * 109.47504 * 210.02317 * 18 17 16 39 39 H 1.09004 * 109.46450 * 59.99911 * 19 18 17 40 40 H 1.08998 * 109.47231 * 300.00763 * 19 18 17 41 41 H 0.96997 * 119.99951 * 0.02562 * 21 20 19 42 42 H 0.97004 * 120.00067 * 179.97438 * 21 20 19 43 43 H 1.08996 * 109.46940 * 90.00350 * 24 23 17 44 44 H 1.09001 * 109.46666 * 209.99909 * 24 23 17 45 45 H 1.08993 * 109.46921 * 329.99911 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9919 1.3345 1.1381 5 6 3.3929 2.7118 1.4549 6 6 2.1958 3.4825 1.9487 7 1 1.2334 2.9976 2.0205 8 6 2.3291 4.8067 2.3089 9 7 3.5011 5.3970 2.2220 10 14 0.8454 5.7619 2.9217 11 1 -0.3461 4.8754 2.9275 12 1 1.1054 6.2496 4.3000 13 1 0.5973 6.9196 2.0255 14 6 4.1662 0.4901 0.8815 15 7 4.8209 0.1652 2.1511 16 7 4.4674 -0.8705 3.0270 17 6 5.2768 -0.8384 4.0363 18 6 5.2487 -1.7791 5.2133 19 6 6.1373 -2.9896 4.9201 20 6 6.1097 -3.9300 6.0973 21 7 6.8243 -5.0722 6.0644 22 8 5.4442 -3.6589 7.0745 23 7 6.1620 0.1968 3.8618 24 6 7.2355 0.5721 4.7855 25 6 5.8765 0.8070 2.6941 26 16 6.6976 2.1526 2.0263 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3582 2.1319 0.0849 31 1 2.6249 1.4005 -0.9294 32 1 4.1605 2.6978 2.2286 33 1 3.7887 3.1902 0.5590 34 1 3.5948 6.3287 2.4751 35 1 4.8653 1.0254 0.2388 36 1 3.8515 -0.4300 0.3890 37 1 4.2257 -2.1130 5.3871 38 1 5.6180 -1.2633 6.0996 39 1 7.1603 -2.6556 4.7463 40 1 5.7680 -3.5054 4.0338 41 1 7.3568 -5.2887 5.2831 42 1 6.8068 -5.6773 6.8223 43 1 8.1453 0.0320 4.5237 44 1 7.4167 1.6446 4.7153 45 1 6.9430 0.3189 5.8045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326111689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:31 Heat of formation + Delta-G solvation = 54.616496 kcal Electronic energy + Delta-G solvation = -27436.790111 eV Core-core repulsion = 23617.294297 eV Total energy + Delta-G solvation = -3819.495815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.80145 -40.48955 -39.09984 -36.50630 -35.26849 -34.97689 -34.58964 -33.98683 -32.26984 -29.90397 -28.79017 -27.57767 -26.32803 -25.72765 -24.24587 -22.64978 -22.12649 -21.25377 -20.62118 -19.14821 -18.60675 -18.36448 -17.92169 -17.73839 -17.63969 -16.91129 -16.74559 -16.44292 -16.29875 -15.83056 -15.55154 -15.25703 -14.49041 -14.40294 -14.34050 -14.25381 -14.05865 -13.78096 -13.62098 -13.42229 -13.29280 -12.92796 -12.84356 -12.63343 -12.61128 -12.40176 -12.21937 -12.06724 -11.88100 -11.65489 -11.42321 -11.17763 -11.04441 -10.62337 -10.59395 -10.28140 -9.32524 -8.90041 -8.65911 -8.14550 -6.28021 -0.08211 0.33947 0.63151 1.15917 1.35856 1.36700 1.46166 1.49942 1.50916 1.67384 2.37776 2.58921 2.94814 3.14443 3.29488 3.39647 3.61166 3.72570 3.89876 4.01568 4.02702 4.18201 4.22654 4.33548 4.34462 4.44096 4.52001 4.58254 4.71528 4.78394 4.88388 4.90621 5.03190 5.03584 5.23947 5.36436 5.42234 5.59751 5.74199 5.94948 5.97350 6.02734 6.08595 6.26055 6.43095 6.49728 6.87380 7.38761 7.39785 8.93738 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.003365 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.138310 B = 8319.457706 C = 9031.288478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.148 4.148 3 C 0.090 3.910 4 N -0.548 5.548 5 C 0.214 3.786 6 C -0.528 4.528 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.920 5.920 10 Si 0.963 3.037 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.305 3.695 15 N -0.358 5.358 16 N -0.277 5.277 17 C 0.278 3.722 18 C -0.020 4.020 19 C -0.131 4.131 20 C 0.523 3.477 21 N -0.838 5.838 22 O -0.590 6.590 23 N -0.486 5.486 24 C 0.071 3.929 25 C 0.466 3.534 26 S -0.659 6.659 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.023 0.977 33 H -0.041 1.041 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.419 0.581 42 H 0.408 0.592 43 H 0.117 0.883 44 H 0.083 0.917 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -25.536 5.184 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C -0.037 4.037 4 N -0.274 5.274 5 C 0.088 3.912 6 C -0.567 4.567 7 H 0.077 0.923 8 C -0.195 4.195 9 N -0.560 5.560 10 Si 0.788 3.212 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.202 1.202 14 C 0.095 3.905 15 N -0.149 5.149 16 N -0.097 5.097 17 C -0.002 4.002 18 C -0.060 4.060 19 C -0.171 4.171 20 C 0.308 3.692 21 N -0.401 5.401 22 O -0.471 6.471 23 N -0.185 5.185 24 C -0.069 4.069 25 C 0.101 3.899 26 S -0.532 6.532 27 H 0.105 0.895 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.041 0.959 33 H -0.023 1.023 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.154 0.846 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.250 0.750 42 H 0.239 0.761 43 H 0.135 0.865 44 H 0.101 0.899 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.442 -24.909 5.222 26.253 hybrid contribution 0.317 1.102 0.039 1.147 sum 6.758 -23.808 5.262 25.301 Atomic orbital electron populations 1.23934 0.95591 1.02380 0.99891 1.22835 0.96334 0.97042 1.00394 1.21129 0.94814 0.97466 0.90255 1.61908 1.13691 1.12571 1.39189 1.19509 0.95419 0.82329 0.93948 1.21429 0.95683 0.95667 1.43884 0.92309 1.25897 0.98754 0.98804 0.96048 1.70206 1.24839 1.12171 1.48743 0.85433 0.79443 0.78478 0.77846 1.18649 1.20732 1.20216 1.22263 0.90981 0.99745 0.77559 1.49491 1.22986 1.22897 1.19515 1.77206 1.21278 1.09575 1.01676 1.25380 0.86662 0.90602 0.97537 1.20179 1.04775 0.91808 0.89275 1.21591 1.03428 0.94124 0.98003 1.20586 0.78024 0.82614 0.87951 1.43737 1.49995 1.22484 1.23933 1.90797 1.43715 1.76026 1.36543 1.46302 1.29819 1.25188 1.17206 1.22598 0.87698 1.04339 0.92247 1.23407 0.88757 0.91357 0.86373 1.93649 1.63162 1.21980 1.74444 0.89486 0.86052 0.86034 0.90950 0.93676 0.95916 1.02319 0.93059 0.90861 0.84620 0.87112 0.86284 0.85498 0.86247 0.74984 0.76074 0.86463 0.89872 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.85 14.32 67.78 0.97 -3.88 16 2 C -0.15 -4.38 9.33 25.65 0.24 -4.14 16 3 C 0.09 3.46 5.24 85.56 0.45 3.90 16 4 N -0.55 -24.31 4.52 -917.75 -4.15 -28.46 16 5 C 0.21 12.09 4.50 85.56 0.39 12.47 16 6 C -0.53 -31.52 8.23 25.60 0.21 -31.31 16 7 H 0.06 3.44 7.31 -2.91 -0.02 3.42 16 8 C 0.00 0.24 5.46 84.66 0.46 0.71 16 9 N -0.92 -59.47 13.29 21.45 0.28 -59.19 16 10 Si 0.96 46.74 29.54 68.60 2.03 48.76 16 11 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 14 C 0.30 11.40 5.88 170.81 1.01 12.41 16 15 N -0.36 -13.19 3.68 -359.53 -1.32 -14.51 16 16 N -0.28 -8.33 12.53 -49.62 -0.62 -8.96 16 17 C 0.28 6.45 7.24 137.70 1.00 7.44 16 18 C -0.02 -0.28 4.82 29.85 0.14 -0.14 16 19 C -0.13 -0.93 5.68 29.85 0.17 -0.76 16 20 C 0.52 5.48 8.10 87.66 0.71 6.19 16 21 N -0.84 -2.71 8.87 -173.54 -1.54 -4.25 16 22 O -0.59 -12.19 16.82 -3.06 -0.05 -12.24 16 23 N -0.49 -13.22 3.14 -539.81 -1.69 -14.92 16 24 C 0.07 1.28 10.70 127.77 1.37 2.65 16 25 C 0.47 17.94 7.02 178.99 1.26 19.19 16 26 S -0.66 -31.92 27.98 -56.49 -1.58 -33.50 16 27 H 0.09 2.51 7.84 -2.91 -0.02 2.49 16 28 H 0.12 2.54 8.06 -2.92 -0.02 2.52 16 29 H 0.12 3.05 7.28 -2.91 -0.02 3.03 16 30 H 0.07 3.16 6.23 -2.38 -0.01 3.15 16 31 H 0.05 1.62 8.00 -2.39 -0.02 1.60 16 32 H 0.02 1.42 5.44 -2.39 -0.01 1.41 16 33 H -0.04 -2.59 8.12 -2.39 -0.02 -2.61 16 34 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.07 3.00 7.36 -2.38 -0.02 2.99 16 36 H 0.14 3.96 6.81 -2.39 -0.02 3.94 16 37 H 0.11 1.79 8.10 -2.39 -0.02 1.77 16 38 H 0.12 1.39 7.01 -2.39 -0.02 1.38 16 39 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 41 H 0.42 -1.24 8.83 -92.71 -0.82 -2.06 16 42 H 0.41 1.10 8.93 -92.71 -0.83 0.27 16 43 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 2.06 7.64 -2.39 -0.02 2.04 16 45 H 0.13 1.35 7.03 -2.39 -0.02 1.33 16 Total: -1.00 -94.06 390.95 -0.90 -94.96 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -0.61 Total: 7.55 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 8.37 Total: 24.75 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -9.05 Total: -130.28 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.05 Total: -12.24 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Atomic # 16 Polarization: -31.92 SS G_CDS: -1.58 Total: -33.50 kcal Total: -94.06 -0.90 -94.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326111689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.574 kcal (2) G-P(sol) polarization free energy of solvation -94.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds