Wall clock time and date at job start Tue Mar 31 2020 23:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47140 * 274.99124 * 3 2 1 5 5 H 1.48506 * 109.47182 * 34.98648 * 3 2 1 6 6 H 1.48500 * 109.47323 * 154.98882 * 3 2 1 7 7 C 1.37881 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 173.96633 * 7 2 1 9 9 C 1.50705 * 119.99392 * 354.23595 * 7 2 1 10 10 O 1.42894 * 110.88944 * 299.79209 * 9 7 2 11 11 C 1.55156 * 111.00016 * 175.91314 * 9 7 2 12 12 C 1.54371 * 102.92059 * 206.45621 * 11 9 7 13 13 N 1.47021 * 107.28632 * 22.13773 * 12 11 9 14 14 C 1.34782 * 125.64903 * 181.12818 * 13 12 11 15 15 O 1.21584 * 120.00086 * 179.97438 * 14 13 12 16 16 N 1.34783 * 119.99610 * 359.95841 * 14 13 12 17 17 C 1.46495 * 119.99751 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47267 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47284 * 179.97438 * 18 17 16 20 20 N 1.46498 * 109.47206 * 179.97438 * 19 18 17 21 21 C 1.33878 * 122.76590 * 269.71863 * 20 19 18 22 22 O 1.21224 * 125.39454 * 359.97361 * 21 20 19 23 23 C 1.51313 * 109.20737 * 179.84029 * 21 20 19 24 24 C 1.54226 * 103.55692 * 0.38547 * 23 21 20 25 25 C 1.33875 * 122.76050 * 89.99843 * 20 19 18 26 26 O 1.21226 * 125.39487 * 359.97438 * 25 20 19 27 27 C 1.47424 * 108.70527 * 1.09378 * 13 12 11 28 28 H 0.96997 * 120.00732 * 359.97438 * 1 2 3 29 29 H 0.96708 * 113.99643 * 59.30012 * 10 9 7 30 30 H 1.09003 * 110.72309 * 324.78746 * 11 9 7 31 31 H 1.08998 * 110.71846 * 88.06318 * 11 9 7 32 32 H 1.08996 * 109.84786 * 262.73547 * 12 11 9 33 33 H 1.09004 * 109.90305 * 141.57781 * 12 11 9 34 34 H 0.96999 * 120.00285 * 0.02562 * 16 14 13 35 35 H 1.09004 * 109.47451 * 300.00363 * 17 16 14 36 36 H 1.09004 * 109.47402 * 60.00167 * 17 16 14 37 37 H 1.08995 * 109.47222 * 300.00290 * 18 17 16 38 38 H 1.09004 * 109.46728 * 60.00299 * 18 17 16 39 39 H 1.08995 * 109.47349 * 300.00361 * 19 18 17 40 40 H 1.09004 * 109.46872 * 60.00536 * 19 18 17 41 41 H 1.08997 * 110.79880 * 241.77427 * 23 21 20 42 42 H 1.08996 * 110.54924 * 118.87201 * 23 21 20 43 43 H 1.09006 * 110.60268 * 241.26236 * 24 23 21 44 44 H 1.08999 * 110.61137 * 118.29379 * 24 23 21 45 45 H 1.08999 * 110.36723 * 217.02770 * 27 13 12 46 46 H 1.09001 * 110.45885 * 94.75631 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1965 -0.0988 9 6 1.2568 -2.4959 0.1300 10 8 0.5317 -2.5459 1.3603 11 6 2.2200 -3.7056 0.0025 12 6 1.2979 -4.8274 -0.5212 13 7 0.1417 -4.1805 -1.1587 14 6 -0.9036 -4.8184 -1.7219 15 8 -1.8086 -4.1786 -2.2218 16 7 -0.9454 -6.1655 -1.7311 17 6 -2.0818 -6.8589 -2.3426 18 6 -1.8835 -8.3709 -2.2187 19 6 -3.0707 -9.0950 -2.8569 20 7 -2.8805 -10.5428 -2.7388 21 6 -2.2535 -11.2697 -3.6719 22 8 -1.7797 -10.8350 -4.6996 23 6 -2.2269 -12.7193 -3.2390 24 6 -2.9638 -12.7056 -1.8842 25 6 -3.3241 -11.2486 -1.6913 26 8 -3.9198 -10.7928 -0.7390 27 6 0.3146 -2.7186 -1.0793 28 1 -0.4851 0.8400 0.0004 29 1 -0.1179 -1.8369 1.4630 30 1 3.0135 -3.4930 -0.7140 31 1 2.6370 -3.9705 0.9741 32 1 0.9634 -5.4493 0.3090 33 1 1.8315 -5.4358 -1.2515 34 1 -0.2235 -6.6760 -1.3321 35 1 -3.0009 -6.5703 -1.8325 36 1 -2.1499 -6.5861 -3.3958 37 1 -0.9645 -8.6598 -2.7285 38 1 -1.8158 -8.6433 -1.1654 39 1 -3.9895 -8.8060 -2.3467 40 1 -3.1388 -8.8226 -3.9101 41 1 -1.2016 -13.0674 -3.1145 42 1 -2.7579 -13.3431 -3.9581 43 1 -2.3048 -13.0467 -1.0857 44 1 -3.8627 -13.3203 -1.9301 45 1 -0.6453 -2.2319 -0.9070 46 1 0.7731 -2.3390 -1.9924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328130485.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:06 Heat of formation + Delta-G solvation = -141.185154 kcal Electronic energy + Delta-G solvation = -29290.006835 eV Core-core repulsion = 24986.974801 eV Total energy + Delta-G solvation = -4303.032033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31494 -39.62267 -39.00241 -37.50595 -36.44070 -35.70015 -34.22091 -33.83988 -32.20656 -31.20858 -29.85233 -27.77227 -26.68835 -26.23204 -24.70939 -22.85330 -22.68262 -22.03568 -20.03036 -19.62951 -19.34434 -17.83168 -17.53182 -17.31599 -17.00179 -16.93787 -15.77380 -15.72511 -15.16592 -14.95866 -14.86950 -14.67533 -14.51761 -14.39020 -14.34912 -13.96422 -13.50585 -13.31290 -13.09338 -12.88227 -12.71985 -12.51731 -12.10958 -11.95115 -11.89394 -11.66600 -11.47414 -11.20405 -11.02819 -11.00766 -10.77276 -10.57242 -10.49158 -10.48058 -10.24986 -10.17880 -9.59021 -9.32490 -8.82427 -8.69947 -8.33709 -7.65203 -6.25462 -4.35460 1.03654 2.01585 2.22400 3.14367 3.22323 3.29994 3.33436 3.54693 3.68415 3.78066 3.86916 4.25413 4.27672 4.43159 4.51423 4.62321 4.78135 4.88202 5.00333 5.00340 5.01729 5.05380 5.14565 5.22470 5.42486 5.51196 5.66055 5.77230 5.83405 5.89961 6.02307 6.14456 6.36086 6.53260 6.72666 6.75595 6.83944 6.92429 7.00414 7.27789 7.29761 7.35073 7.67393 7.76726 8.04307 8.56208 8.68861 9.16134 9.32393 9.37761 10.80833 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028014 B = 0.001924 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.264839 B =14552.743712 C =14586.435948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.628 5.628 14 C 0.716 3.284 15 O -0.596 6.596 16 N -0.752 5.752 17 C 0.146 3.854 18 C -0.145 4.145 19 C 0.102 3.898 20 N -0.574 5.574 21 C 0.524 3.476 22 O -0.478 6.478 23 C -0.157 4.157 24 C -0.157 4.157 25 C 0.524 3.476 26 O -0.476 6.476 27 C 0.114 3.886 28 H 0.270 0.730 29 H 0.381 0.619 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.393 0.607 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.086 0.914 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 -26.993 -4.805 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.018 4.018 13 N -0.365 5.365 14 C 0.418 3.582 15 O -0.475 6.475 16 N -0.410 5.410 17 C 0.021 3.979 18 C -0.184 4.184 19 C -0.020 4.020 20 N -0.317 5.317 21 C 0.313 3.687 22 O -0.349 6.349 23 C -0.197 4.197 24 C -0.197 4.197 25 C 0.312 3.688 26 O -0.347 6.347 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.230 0.770 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.226 0.774 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.104 0.896 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.463 -26.426 -5.168 27.294 hybrid contribution 0.440 1.158 0.038 1.240 sum -4.024 -25.267 -5.130 26.095 Atomic orbital electron populations 1.69764 1.05949 1.27871 1.49245 1.25093 0.95032 0.99785 0.93387 0.86403 0.79900 0.82562 0.78107 1.20539 1.20943 1.19664 1.21456 0.94084 0.90185 1.52008 0.91509 1.19631 0.87040 0.91695 0.80949 1.86099 1.57113 1.55640 1.40224 1.22595 0.97322 0.94730 1.00701 1.21928 0.87676 0.96494 0.95731 1.47947 1.19892 1.09523 1.59142 1.15497 0.82154 0.81067 0.79462 1.90886 1.38319 1.65691 1.52603 1.45045 1.25416 1.05237 1.65259 1.20894 0.89498 0.88828 0.98725 1.22083 0.98816 0.95249 1.02242 1.21700 0.99946 0.76538 1.03798 1.46796 1.52318 1.10754 1.21861 1.20869 0.75828 0.89614 0.82370 1.90814 1.43073 1.77537 1.23442 1.22480 1.05049 0.94305 0.97877 1.22488 1.04021 0.94164 0.99026 1.20881 0.77046 0.89801 0.81022 1.90822 1.37158 1.76640 1.30099 1.23151 1.02556 0.75033 1.00012 0.92009 0.76963 0.90420 0.90795 0.92732 0.93216 0.77398 0.91445 0.91484 0.90650 0.90590 0.88226 0.88257 0.86035 0.86132 0.86043 0.86100 0.89602 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.02 10.70 55.43 0.59 -23.43 16 2 C 0.07 1.85 5.27 -17.82 -0.09 1.76 16 3 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.06 8.25 -34.44 -0.28 -14.35 16 8 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 9 C 0.25 6.03 0.88 -89.62 -0.08 5.95 16 10 O -0.58 -14.94 13.17 -35.23 -0.46 -15.40 16 11 C -0.12 -2.29 6.13 -24.87 -0.15 -2.45 16 12 C 0.11 1.86 6.15 -3.04 -0.02 1.84 16 13 N -0.63 -13.37 3.33 -176.21 -0.59 -13.95 16 14 C 0.72 15.04 8.49 -86.91 -0.74 14.30 16 15 O -0.60 -14.86 16.60 5.29 0.09 -14.77 16 16 N -0.75 -11.65 5.52 -65.22 -0.36 -12.01 16 17 C 0.15 1.87 5.67 -4.05 -0.02 1.85 16 18 C -0.15 -1.37 5.65 -26.73 -0.15 -1.52 16 19 C 0.10 0.86 5.56 -4.04 -0.02 0.83 16 20 N -0.57 -4.30 2.55 -115.34 -0.29 -4.59 16 21 C 0.52 3.71 8.08 -11.09 -0.09 3.62 16 22 O -0.48 -5.20 17.47 5.61 0.10 -5.10 16 23 C -0.16 -0.36 7.03 -26.94 -0.19 -0.55 16 24 C -0.16 -0.37 7.03 -26.94 -0.19 -0.56 16 25 C 0.52 3.76 8.08 -11.08 -0.09 3.67 16 26 O -0.48 -5.29 17.48 5.60 0.10 -5.19 16 27 C 0.11 2.82 5.39 -2.53 -0.01 2.81 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.38 10.04 7.54 45.56 0.34 10.39 16 30 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.39 5.12 7.46 -40.82 -0.30 4.81 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.83 7.83 -51.93 -0.41 0.43 16 40 H 0.10 0.82 7.82 -51.93 -0.41 0.41 16 41 H 0.12 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 43 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 45 H 0.09 2.40 7.31 -51.93 -0.38 2.02 16 46 H 0.06 1.46 8.03 -51.93 -0.42 1.04 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -35.21 385.01 -8.36 -43.58 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.18 Total: 12.44 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: -2.13 Total: 17.20 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.65 Total: -53.98 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -0.18 Total: -40.47 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.21 -8.36 -43.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328130485.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.610 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds