Wall clock time and date at job start Tue Mar 31 2020 23:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47140 * 274.99124 * 3 2 1 5 5 H 1.48506 * 109.47182 * 34.98648 * 3 2 1 6 6 H 1.48500 * 109.47323 * 154.98882 * 3 2 1 7 7 C 1.37881 * 120.00570 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 173.96633 * 7 2 1 9 9 C 1.50705 * 119.99392 * 354.23595 * 7 2 1 10 10 O 1.42894 * 110.88944 * 299.79209 * 9 7 2 11 11 C 1.55156 * 111.00016 * 175.91314 * 9 7 2 12 12 C 1.54371 * 102.92059 * 206.45621 * 11 9 7 13 13 N 1.47021 * 107.28632 * 22.13773 * 12 11 9 14 14 C 1.34782 * 125.64903 * 181.12818 * 13 12 11 15 15 O 1.21584 * 120.00086 * 179.97438 * 14 13 12 16 16 N 1.34783 * 119.99610 * 359.95841 * 14 13 12 17 17 C 1.46495 * 119.99751 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47267 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47284 * 179.97438 * 18 17 16 20 20 N 1.46498 * 109.47206 * 179.97438 * 19 18 17 21 21 C 1.33878 * 122.76590 * 269.71863 * 20 19 18 22 22 O 1.21224 * 125.39454 * 359.97361 * 21 20 19 23 23 C 1.51313 * 109.20737 * 179.84029 * 21 20 19 24 24 C 1.54226 * 103.55692 * 0.38547 * 23 21 20 25 25 C 1.33875 * 122.76050 * 89.99843 * 20 19 18 26 26 O 1.21226 * 125.39487 * 359.97438 * 25 20 19 27 27 C 1.47424 * 108.70527 * 1.09378 * 13 12 11 28 28 H 0.96997 * 120.00732 * 359.97438 * 1 2 3 29 29 H 0.96708 * 113.99643 * 59.30012 * 10 9 7 30 30 H 1.09003 * 110.72309 * 324.78746 * 11 9 7 31 31 H 1.08998 * 110.71846 * 88.06318 * 11 9 7 32 32 H 1.08996 * 109.84786 * 262.73547 * 12 11 9 33 33 H 1.09004 * 109.90305 * 141.57781 * 12 11 9 34 34 H 0.96999 * 120.00285 * 0.02562 * 16 14 13 35 35 H 1.09004 * 109.47451 * 300.00363 * 17 16 14 36 36 H 1.09004 * 109.47402 * 60.00167 * 17 16 14 37 37 H 1.08995 * 109.47222 * 300.00290 * 18 17 16 38 38 H 1.09004 * 109.46728 * 60.00299 * 18 17 16 39 39 H 1.08995 * 109.47349 * 300.00361 * 19 18 17 40 40 H 1.09004 * 109.46872 * 60.00536 * 19 18 17 41 41 H 1.08997 * 110.79880 * 241.77427 * 23 21 20 42 42 H 1.08996 * 110.54924 * 118.87201 * 23 21 20 43 43 H 1.09006 * 110.60268 * 241.26236 * 24 23 21 44 44 H 1.08999 * 110.61137 * 118.29379 * 24 23 21 45 45 H 1.08999 * 110.36723 * 217.02770 * 27 13 12 46 46 H 1.09001 * 110.45885 * 94.75631 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1965 -0.0988 9 6 1.2568 -2.4959 0.1300 10 8 0.5317 -2.5459 1.3603 11 6 2.2200 -3.7056 0.0025 12 6 1.2979 -4.8274 -0.5212 13 7 0.1417 -4.1805 -1.1587 14 6 -0.9036 -4.8184 -1.7219 15 8 -1.8086 -4.1786 -2.2218 16 7 -0.9454 -6.1655 -1.7311 17 6 -2.0818 -6.8589 -2.3426 18 6 -1.8835 -8.3709 -2.2187 19 6 -3.0707 -9.0950 -2.8569 20 7 -2.8805 -10.5428 -2.7388 21 6 -2.2535 -11.2697 -3.6719 22 8 -1.7797 -10.8350 -4.6996 23 6 -2.2269 -12.7193 -3.2390 24 6 -2.9638 -12.7056 -1.8842 25 6 -3.3241 -11.2486 -1.6913 26 8 -3.9198 -10.7928 -0.7390 27 6 0.3146 -2.7186 -1.0793 28 1 -0.4851 0.8400 0.0004 29 1 -0.1179 -1.8369 1.4630 30 1 3.0135 -3.4930 -0.7140 31 1 2.6370 -3.9705 0.9741 32 1 0.9634 -5.4493 0.3090 33 1 1.8315 -5.4358 -1.2515 34 1 -0.2235 -6.6760 -1.3321 35 1 -3.0009 -6.5703 -1.8325 36 1 -2.1499 -6.5861 -3.3958 37 1 -0.9645 -8.6598 -2.7285 38 1 -1.8158 -8.6433 -1.1654 39 1 -3.9895 -8.8060 -2.3467 40 1 -3.1388 -8.8226 -3.9101 41 1 -1.2016 -13.0674 -3.1145 42 1 -2.7579 -13.3431 -3.9581 43 1 -2.3048 -13.0467 -1.0857 44 1 -3.8627 -13.3203 -1.9301 45 1 -0.6453 -2.2319 -0.9070 46 1 0.7731 -2.3390 -1.9924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328130485.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:05 Heat of formation + Delta-G solvation = -169.136281 kcal Electronic energy + Delta-G solvation = -29291.218887 eV Core-core repulsion = 24986.974801 eV Total energy + Delta-G solvation = -4304.244085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.84589 -41.27060 -39.64189 -39.21253 -37.27735 -36.63011 -36.07367 -34.70583 -34.23396 -32.31147 -31.29872 -29.54226 -27.53590 -27.07609 -26.27980 -24.18510 -23.27674 -23.10676 -21.47797 -21.10939 -20.35815 -19.30325 -18.85533 -18.36371 -17.84040 -17.53030 -17.28700 -17.04524 -16.82240 -16.24746 -16.13165 -15.87856 -15.35984 -15.28060 -15.03750 -14.88152 -14.83417 -14.72488 -14.58839 -13.89535 -13.70685 -13.60751 -13.54472 -13.49229 -13.25007 -12.86152 -12.81429 -12.51697 -12.33178 -12.24791 -12.12955 -12.10661 -12.05520 -11.62213 -11.40037 -11.18099 -11.06809 -10.89928 -10.69837 -10.35528 -10.24119 -9.35071 -8.24609 -6.42224 0.50929 1.40024 1.42339 1.44510 1.54583 1.68147 1.77359 2.11471 2.38083 3.00343 3.04413 3.23716 3.30573 3.66020 3.72966 3.77092 3.77857 3.90237 4.07811 4.17952 4.21986 4.27699 4.32542 4.33908 4.44377 4.58127 4.62506 4.76543 4.80230 4.88343 4.93375 4.94503 4.98981 5.06959 5.09993 5.28826 5.37386 5.42997 5.45590 5.75619 5.83315 6.02698 6.15109 6.33551 6.65208 6.74994 7.02645 7.26339 7.32788 7.53010 8.80014 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028014 B = 0.001924 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.264839 B =14552.743712 C =14586.435948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.106 3.894 13 N -0.634 5.634 14 C 0.709 3.291 15 O -0.645 6.645 16 N -0.731 5.731 17 C 0.145 3.855 18 C -0.125 4.125 19 C 0.098 3.902 20 N -0.578 5.578 21 C 0.519 3.481 22 O -0.523 6.523 23 C -0.142 4.142 24 C -0.142 4.142 25 C 0.518 3.482 26 O -0.523 6.523 27 C 0.129 3.871 28 H 0.269 0.731 29 H 0.372 0.628 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.409 0.591 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.043 0.957 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -30.286 -4.655 30.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.016 4.016 13 N -0.371 5.371 14 C 0.411 3.589 15 O -0.527 6.527 16 N -0.388 5.388 17 C 0.020 3.980 18 C -0.164 4.164 19 C -0.024 4.024 20 N -0.321 5.321 21 C 0.311 3.689 22 O -0.397 6.397 23 C -0.181 4.181 24 C -0.181 4.181 25 C 0.310 3.690 26 O -0.398 6.398 27 C 0.005 3.995 28 H 0.078 0.922 29 H 0.221 0.779 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.245 0.755 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.061 0.939 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.775 -29.816 -5.003 30.360 hybrid contribution -0.112 2.160 -0.031 2.163 sum -2.887 -27.657 -5.034 28.259 Atomic orbital electron populations 1.69897 1.07230 1.28377 1.49921 1.25869 0.95734 1.02990 0.93111 0.85431 0.78885 0.78665 0.77953 1.20407 1.20937 1.18796 1.21801 0.94441 0.91274 1.51901 0.91107 1.19874 0.87597 0.93393 0.80062 1.86090 1.57011 1.55236 1.41050 1.22605 0.96991 0.93163 1.01994 1.22136 0.86233 0.95991 0.97204 1.47895 1.21202 1.08389 1.59568 1.15746 0.81489 0.82530 0.79166 1.90847 1.40075 1.67190 1.54606 1.44873 1.26376 1.03265 1.64267 1.21023 0.88199 0.90802 0.97983 1.21882 0.99489 0.92492 1.02521 1.21588 0.99317 0.77980 1.03520 1.46983 1.52406 1.10185 1.22505 1.21759 0.74304 0.91499 0.81308 1.90796 1.44975 1.78691 1.25203 1.22595 1.06820 0.90652 0.97993 1.22604 1.05441 0.90389 0.99631 1.21787 0.75636 0.91755 0.79801 1.90802 1.39310 1.77861 1.31781 1.22687 1.00195 0.77150 0.99475 0.92201 0.77944 0.89195 0.89477 0.90920 0.89177 0.75496 0.92498 0.92026 0.90019 0.90358 0.88645 0.88431 0.83689 0.83659 0.83764 0.83661 0.93881 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.04 10.70 21.45 0.23 -50.81 16 2 C 0.02 1.27 5.27 84.66 0.45 1.71 16 3 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.56 -29.14 8.25 25.60 0.21 -28.93 16 8 H 0.07 3.56 7.79 -2.91 -0.02 3.54 16 9 C 0.23 11.33 0.88 -10.15 -0.01 11.32 16 10 O -0.59 -30.53 13.17 -148.98 -1.96 -32.49 16 11 C -0.11 -4.14 6.13 31.80 0.19 -3.95 16 12 C 0.11 3.49 6.15 86.75 0.53 4.02 16 13 N -0.63 -26.92 3.33 -829.66 -2.76 -29.68 16 14 C 0.71 30.06 8.49 179.05 1.52 31.58 16 15 O -0.64 -33.43 16.60 -3.98 -0.07 -33.50 16 16 N -0.73 -22.04 5.52 -478.53 -2.64 -24.68 16 17 C 0.14 3.71 5.67 86.38 0.49 4.20 16 18 C -0.13 -2.26 5.65 30.59 0.17 -2.09 16 19 C 0.10 1.65 5.56 86.38 0.48 2.13 16 20 N -0.58 -7.97 2.55 -756.66 -1.93 -9.90 16 21 C 0.52 6.38 8.08 87.99 0.71 7.09 16 22 O -0.52 -10.92 17.47 -2.86 -0.05 -10.97 16 23 C -0.14 -0.08 7.03 30.46 0.21 0.13 16 24 C -0.14 -0.11 7.03 30.46 0.21 0.10 16 25 C 0.52 6.55 8.08 87.99 0.71 7.27 16 26 O -0.52 -11.33 17.48 -2.86 -0.05 -11.38 16 27 C 0.13 6.55 5.39 86.85 0.47 7.02 16 28 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.37 20.41 7.54 -74.05 -0.56 19.85 16 30 H 0.09 3.15 8.03 -2.39 -0.02 3.13 16 31 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.41 9.70 7.46 -92.71 -0.69 9.01 16 35 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.10 1.67 7.83 -2.39 -0.02 1.65 16 40 H 0.10 1.66 7.82 -2.38 -0.02 1.64 16 41 H 0.15 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.15 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.14 -0.42 8.14 -2.38 -0.02 -0.44 16 44 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 45 H 0.04 2.54 7.31 -2.39 -0.02 2.52 16 46 H 0.04 2.05 8.03 -2.39 -0.02 2.03 16 Total: -1.00 -81.29 385.01 -1.08 -82.37 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -0.23 Total: 35.14 kcal Atomic # 6 Polarization: 35.26 SS G_CDS: 6.36 Total: 41.62 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -7.10 Total: -115.06 kcal Atomic # 8 Polarization: -86.21 SS G_CDS: -2.13 Total: -88.33 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -81.29 -1.08 -82.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328130485.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.768 kcal (2) G-P(sol) polarization free energy of solvation -81.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds