Wall clock time and date at job start Tue Mar 31 2020 23:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99738 * 2 1 4 4 H 1.48495 * 109.46940 * 240.00078 * 3 2 1 5 5 H 1.48500 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47032 * 119.99589 * 3 2 1 7 7 C 1.37871 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08013 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00467 * 0.02562 * 7 2 1 10 10 O 1.42909 * 110.88531 * 62.42496 * 9 7 2 11 11 C 1.55155 * 111.04162 * 186.32631 * 9 7 2 12 12 C 1.54337 * 103.02169 * 153.39326 * 11 9 7 13 13 N 1.47026 * 107.26591 * 338.14816 * 12 11 9 14 14 C 1.34776 * 125.64560 * 178.84883 * 13 12 11 15 15 O 1.21590 * 119.99449 * 179.68807 * 14 13 12 16 16 N 1.34770 * 120.00072 * 359.68891 * 14 13 12 17 17 C 1.46507 * 119.99912 * 180.02562 * 16 14 13 18 18 C 1.52992 * 109.47485 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.33874 * 122.76026 * 269.71098 * 20 19 18 22 22 O 1.21218 * 125.39988 * 359.97438 * 21 20 19 23 23 C 1.51314 * 109.19967 * 179.84321 * 21 20 19 24 24 C 1.54222 * 103.56112 * 0.38673 * 23 21 20 25 25 C 1.33880 * 122.75751 * 90.00065 * 20 19 18 26 26 O 1.21222 * 125.39791 * 359.97438 * 25 20 19 27 27 C 1.47427 * 108.69994 * 358.58082 * 13 12 11 28 28 H 0.97001 * 120.00561 * 0.02562 * 1 2 3 29 29 H 0.96706 * 113.99540 * 297.57321 * 10 9 7 30 30 H 1.08991 * 110.72559 * 271.95642 * 11 9 7 31 31 H 1.09006 * 110.71698 * 35.23132 * 11 9 7 32 32 H 1.09002 * 109.99565 * 218.67001 * 12 11 9 33 33 H 1.09004 * 109.77396 * 97.49619 * 12 11 9 34 34 H 0.96992 * 120.00518 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.47280 * 59.99618 * 17 16 14 36 36 H 1.09001 * 109.46702 * 299.99811 * 17 16 14 37 37 H 1.09002 * 109.47103 * 59.99596 * 18 17 16 38 38 H 1.08998 * 109.46862 * 300.00408 * 18 17 16 39 39 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 40 40 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 41 41 H 1.09005 * 110.79410 * 241.77470 * 23 21 20 42 42 H 1.09003 * 110.54727 * 118.87657 * 23 21 20 43 43 H 1.08998 * 110.60730 * 241.26473 * 24 23 21 44 44 H 1.08999 * 110.61393 * 118.29430 * 24 23 21 45 45 H 1.09003 * 110.36477 * 143.20144 * 27 13 12 46 46 H 1.09003 * 110.36367 * 265.40918 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.4617 -2.6316 -1.1833 11 6 2.2192 -3.7010 0.1607 12 6 1.3288 -4.7801 0.8126 13 7 0.2055 -4.0865 1.4597 14 6 -0.8078 -4.6798 2.1213 15 8 -1.6840 -4.0033 2.6242 16 7 -0.8497 -6.0228 2.2254 17 6 -1.9514 -6.6678 2.9442 18 6 -1.7609 -8.1855 2.9140 19 6 -2.9112 -8.8590 3.6651 20 7 -2.7290 -10.3124 3.6357 21 6 -3.2358 -11.0865 2.6682 22 8 -3.8888 -10.6947 1.7251 23 6 -2.8615 -12.5278 2.9369 24 6 -2.0504 -12.4527 4.2464 25 6 -2.0467 -10.9761 4.5771 26 8 -1.5107 -10.4738 5.5414 27 6 0.3746 -2.6342 1.2705 28 1 -0.4851 0.8400 -0.0004 29 1 -0.2243 -1.9563 -1.2761 30 1 2.5844 -4.0343 -0.8106 31 1 3.0493 -3.4426 0.8182 32 1 1.9001 -5.3351 1.5567 33 1 0.9534 -5.4599 0.0476 34 1 -0.1509 -6.5625 1.8240 35 1 -2.8968 -6.4111 2.4661 36 1 -1.9618 -6.3230 3.9782 37 1 -0.8155 -8.4426 3.3918 38 1 -1.7507 -8.5299 1.8799 39 1 -3.8567 -8.6019 3.1877 40 1 -2.9208 -8.5145 4.6992 41 1 -2.2484 -12.9256 2.1281 42 1 -3.7556 -13.1361 3.0738 43 1 -1.0338 -12.8131 4.0892 44 1 -2.5423 -13.0214 5.0356 45 1 -0.5930 -2.1565 1.1163 46 1 0.8803 -2.1960 2.1310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328130495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:10 Heat of formation + Delta-G solvation = -141.205485 kcal Electronic energy + Delta-G solvation = -29295.392983 eV Core-core repulsion = 24992.360068 eV Total energy + Delta-G solvation = -4303.032915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31682 -39.63336 -39.00541 -37.50847 -36.44331 -35.70321 -34.20481 -33.84072 -32.20363 -31.21071 -29.85584 -27.77536 -26.69011 -26.23473 -24.70389 -22.85494 -22.68802 -22.04201 -20.03303 -19.63313 -19.35450 -17.83436 -17.53283 -17.31335 -16.98258 -16.93683 -15.78023 -15.73295 -15.16612 -14.95410 -14.88131 -14.67767 -14.52419 -14.39541 -14.35708 -13.97044 -13.51792 -13.31458 -13.09062 -12.87929 -12.71609 -12.52420 -12.11303 -11.95224 -11.89895 -11.62763 -11.45997 -11.19875 -11.03006 -10.99580 -10.80511 -10.59008 -10.49314 -10.47366 -10.25235 -10.17485 -9.59990 -9.34026 -8.83271 -8.66811 -8.33577 -7.66551 -6.24644 -4.34728 1.03520 2.01395 2.22251 3.13514 3.24712 3.29980 3.31746 3.54587 3.68249 3.77076 3.86803 4.25363 4.28030 4.42458 4.51127 4.61955 4.77703 4.88074 5.00218 5.01017 5.02375 5.05216 5.14221 5.22156 5.42400 5.50834 5.65793 5.76358 5.82970 5.89615 6.02955 6.13939 6.35915 6.52910 6.72093 6.74798 6.83779 6.91006 6.98797 7.25922 7.29600 7.35089 7.66111 7.76972 8.06083 8.55195 8.69291 9.15106 9.32637 9.40837 10.82321 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.001930 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.276830 B =14506.219948 C =14542.934394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.628 5.628 14 C 0.716 3.284 15 O -0.596 6.596 16 N -0.752 5.752 17 C 0.146 3.854 18 C -0.145 4.145 19 C 0.102 3.898 20 N -0.574 5.574 21 C 0.524 3.476 22 O -0.476 6.476 23 C -0.157 4.157 24 C -0.157 4.157 25 C 0.524 3.476 26 O -0.478 6.478 27 C 0.114 3.886 28 H 0.271 0.729 29 H 0.381 0.619 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.393 0.607 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.085 0.915 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -26.624 7.021 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.365 5.365 14 C 0.418 3.582 15 O -0.475 6.475 16 N -0.409 5.409 17 C 0.021 3.979 18 C -0.184 4.184 19 C -0.020 4.020 20 N -0.317 5.317 21 C 0.313 3.687 22 O -0.347 6.347 23 C -0.197 4.197 24 C -0.197 4.197 25 C 0.313 3.687 26 O -0.349 6.349 27 C -0.008 4.008 28 H 0.081 0.919 29 H 0.231 0.769 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.226 0.774 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.104 0.896 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.220 -26.010 7.361 27.359 hybrid contribution 0.432 1.129 -0.051 1.210 sum -3.788 -24.880 7.310 26.207 Atomic orbital electron populations 1.69712 1.05966 1.28011 1.49300 1.25086 0.95045 0.99746 0.93381 0.86460 0.79511 0.82141 0.78761 1.20036 1.21103 1.20033 1.21407 0.93572 0.90053 1.52647 0.91601 1.19627 0.86649 0.91524 0.81423 1.86103 1.51555 1.57165 1.44326 1.22589 0.97547 0.95202 1.00031 1.21930 0.88323 0.96091 0.95499 1.47937 1.23193 1.09801 1.55575 1.15490 0.81911 0.81255 0.79513 1.90888 1.39658 1.63217 1.53752 1.45040 1.28898 1.05544 1.61452 1.20896 0.90287 0.89438 0.97324 1.22081 0.99117 0.95470 1.01726 1.21700 1.00301 0.76536 1.03446 1.46798 1.49383 1.10229 1.25326 1.20869 0.77603 0.89393 0.80860 1.90820 1.35669 1.79600 1.28625 1.22483 1.03449 0.94490 0.99295 1.22485 1.04525 0.93729 0.98959 1.20877 0.76293 0.90318 0.81209 1.90814 1.41923 1.74931 1.27195 1.23136 1.02564 0.75617 0.99502 0.91935 0.76911 0.90786 0.90436 0.93184 0.92725 0.77388 0.91435 0.91479 0.90648 0.90586 0.88223 0.88259 0.86023 0.86124 0.86055 0.86107 0.89640 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.10 10.69 55.43 0.59 -23.50 16 2 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.08 8.27 -34.45 -0.28 -14.37 16 8 H 0.07 1.68 7.79 -52.48 -0.41 1.27 16 9 C 0.25 6.06 0.87 -89.63 -0.08 5.98 16 10 O -0.58 -15.00 13.16 -35.23 -0.46 -15.46 16 11 C -0.12 -2.30 6.13 -24.89 -0.15 -2.45 16 12 C 0.11 1.85 6.15 -3.05 -0.02 1.84 16 13 N -0.63 -13.33 3.33 -176.22 -0.59 -13.91 16 14 C 0.72 14.99 8.49 -86.92 -0.74 14.25 16 15 O -0.60 -14.81 16.60 5.29 0.09 -14.73 16 16 N -0.75 -11.61 5.52 -65.22 -0.36 -11.97 16 17 C 0.15 1.86 5.67 -4.04 -0.02 1.84 16 18 C -0.15 -1.37 5.65 -26.74 -0.15 -1.52 16 19 C 0.10 0.85 5.56 -4.04 -0.02 0.83 16 20 N -0.57 -4.29 2.55 -115.34 -0.29 -4.58 16 21 C 0.52 3.75 8.08 -11.09 -0.09 3.66 16 22 O -0.48 -5.28 17.47 5.61 0.10 -5.18 16 23 C -0.16 -0.37 7.03 -26.94 -0.19 -0.56 16 24 C -0.16 -0.36 7.03 -26.94 -0.19 -0.55 16 25 C 0.52 3.70 8.08 -11.08 -0.09 3.61 16 26 O -0.48 -5.19 17.48 5.61 0.10 -5.09 16 27 C 0.11 2.80 5.38 -2.53 -0.01 2.79 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.38 10.09 7.56 45.56 0.34 10.43 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.39 5.10 7.46 -40.82 -0.30 4.79 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.83 7.82 -51.93 -0.41 0.43 16 40 H 0.10 0.82 7.83 -51.93 -0.41 0.41 16 41 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.12 0.08 8.14 -51.93 -0.42 -0.35 16 43 H 0.12 0.10 8.14 -51.93 -0.42 -0.32 16 44 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 45 H 0.09 2.38 7.33 -51.93 -0.38 2.00 16 46 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -35.21 385.05 -8.36 -43.57 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.18 Total: 12.44 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: -2.13 Total: 17.12 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.65 Total: -53.97 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.18 Total: -40.46 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.21 -8.36 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328130495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.634 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds