Wall clock time and date at job start Tue Mar 31 2020 23:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99738 * 2 1 4 4 H 1.48495 * 109.46940 * 240.00078 * 3 2 1 5 5 H 1.48500 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47032 * 119.99589 * 3 2 1 7 7 C 1.37871 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08013 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00467 * 0.02562 * 7 2 1 10 10 O 1.42909 * 110.88531 * 62.42496 * 9 7 2 11 11 C 1.55155 * 111.04162 * 186.32631 * 9 7 2 12 12 C 1.54337 * 103.02169 * 153.39326 * 11 9 7 13 13 N 1.47026 * 107.26591 * 338.14816 * 12 11 9 14 14 C 1.34776 * 125.64560 * 178.84883 * 13 12 11 15 15 O 1.21590 * 119.99449 * 179.68807 * 14 13 12 16 16 N 1.34770 * 120.00072 * 359.68891 * 14 13 12 17 17 C 1.46507 * 119.99912 * 180.02562 * 16 14 13 18 18 C 1.52992 * 109.47485 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.33874 * 122.76026 * 269.71098 * 20 19 18 22 22 O 1.21218 * 125.39988 * 359.97438 * 21 20 19 23 23 C 1.51314 * 109.19967 * 179.84321 * 21 20 19 24 24 C 1.54222 * 103.56112 * 0.38673 * 23 21 20 25 25 C 1.33880 * 122.75751 * 90.00065 * 20 19 18 26 26 O 1.21222 * 125.39791 * 359.97438 * 25 20 19 27 27 C 1.47427 * 108.69994 * 358.58082 * 13 12 11 28 28 H 0.97001 * 120.00561 * 0.02562 * 1 2 3 29 29 H 0.96706 * 113.99540 * 297.57321 * 10 9 7 30 30 H 1.08991 * 110.72559 * 271.95642 * 11 9 7 31 31 H 1.09006 * 110.71698 * 35.23132 * 11 9 7 32 32 H 1.09002 * 109.99565 * 218.67001 * 12 11 9 33 33 H 1.09004 * 109.77396 * 97.49619 * 12 11 9 34 34 H 0.96992 * 120.00518 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.47280 * 59.99618 * 17 16 14 36 36 H 1.09001 * 109.46702 * 299.99811 * 17 16 14 37 37 H 1.09002 * 109.47103 * 59.99596 * 18 17 16 38 38 H 1.08998 * 109.46862 * 300.00408 * 18 17 16 39 39 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 40 40 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 41 41 H 1.09005 * 110.79410 * 241.77470 * 23 21 20 42 42 H 1.09003 * 110.54727 * 118.87657 * 23 21 20 43 43 H 1.08998 * 110.60730 * 241.26473 * 24 23 21 44 44 H 1.08999 * 110.61393 * 118.29430 * 24 23 21 45 45 H 1.09003 * 110.36477 * 143.20144 * 27 13 12 46 46 H 1.09003 * 110.36367 * 265.40918 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.4617 -2.6316 -1.1833 11 6 2.2192 -3.7010 0.1607 12 6 1.3288 -4.7801 0.8126 13 7 0.2055 -4.0865 1.4597 14 6 -0.8078 -4.6798 2.1213 15 8 -1.6840 -4.0033 2.6242 16 7 -0.8497 -6.0228 2.2254 17 6 -1.9514 -6.6678 2.9442 18 6 -1.7609 -8.1855 2.9140 19 6 -2.9112 -8.8590 3.6651 20 7 -2.7290 -10.3124 3.6357 21 6 -3.2358 -11.0865 2.6682 22 8 -3.8888 -10.6947 1.7251 23 6 -2.8615 -12.5278 2.9369 24 6 -2.0504 -12.4527 4.2464 25 6 -2.0467 -10.9761 4.5771 26 8 -1.5107 -10.4738 5.5414 27 6 0.3746 -2.6342 1.2705 28 1 -0.4851 0.8400 -0.0004 29 1 -0.2243 -1.9563 -1.2761 30 1 2.5844 -4.0343 -0.8106 31 1 3.0493 -3.4426 0.8182 32 1 1.9001 -5.3351 1.5567 33 1 0.9534 -5.4599 0.0476 34 1 -0.1509 -6.5625 1.8240 35 1 -2.8968 -6.4111 2.4661 36 1 -1.9618 -6.3230 3.9782 37 1 -0.8155 -8.4426 3.3918 38 1 -1.7507 -8.5299 1.8799 39 1 -3.8567 -8.6019 3.1877 40 1 -2.9208 -8.5145 4.6992 41 1 -2.2484 -12.9256 2.1281 42 1 -3.7556 -13.1361 3.0738 43 1 -1.0338 -12.8131 4.0892 44 1 -2.5423 -13.0214 5.0356 45 1 -0.5930 -2.1565 1.1163 46 1 0.8803 -2.1960 2.1310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328130495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:09 Heat of formation + Delta-G solvation = -169.143912 kcal Electronic energy + Delta-G solvation = -29296.604484 eV Core-core repulsion = 24992.360068 eV Total energy + Delta-G solvation = -4304.244416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.84619 -41.27652 -39.64334 -39.21161 -37.27774 -36.63077 -36.05563 -34.70561 -34.23482 -32.30980 -31.30155 -29.54404 -27.53432 -27.07658 -26.27484 -24.19085 -23.27691 -23.10756 -21.48205 -21.11451 -20.35875 -19.28850 -18.84197 -18.36431 -17.84105 -17.53077 -17.28706 -17.05388 -16.81853 -16.25987 -16.14488 -15.88032 -15.35688 -15.28156 -15.04437 -14.88548 -14.83060 -14.72167 -14.58321 -13.89578 -13.69248 -13.60741 -13.50706 -13.49191 -13.24923 -12.85799 -12.79909 -12.53779 -12.33746 -12.27868 -12.12985 -12.09822 -12.05528 -11.62249 -11.40437 -11.19632 -11.06805 -10.90024 -10.66230 -10.35447 -10.24834 -9.35783 -8.24211 -6.41895 0.50939 1.40295 1.43787 1.44741 1.52402 1.67990 1.77150 2.11059 2.38345 3.01290 3.04104 3.23732 3.30542 3.66023 3.72933 3.77067 3.78380 3.90211 4.07686 4.17730 4.21946 4.27677 4.32362 4.33798 4.44339 4.58104 4.62268 4.75659 4.80203 4.88308 4.93348 4.94446 4.98944 5.06016 5.09149 5.28113 5.36065 5.42662 5.45784 5.75575 5.83313 6.03928 6.15041 6.33530 6.65351 6.74995 7.02182 7.26795 7.34643 7.52566 8.80761 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.001930 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.276830 B =14506.219948 C =14542.934394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.110 4.110 12 C 0.106 3.894 13 N -0.634 5.634 14 C 0.709 3.291 15 O -0.644 6.644 16 N -0.731 5.731 17 C 0.145 3.855 18 C -0.125 4.125 19 C 0.098 3.902 20 N -0.578 5.578 21 C 0.519 3.481 22 O -0.523 6.523 23 C -0.142 4.142 24 C -0.141 4.141 25 C 0.519 3.481 26 O -0.522 6.522 27 C 0.128 3.872 28 H 0.269 0.731 29 H 0.372 0.628 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.409 0.591 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.043 0.957 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -29.917 7.107 30.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.148 4.148 12 C -0.016 4.016 13 N -0.370 5.370 14 C 0.411 3.589 15 O -0.527 6.527 16 N -0.388 5.388 17 C 0.020 3.980 18 C -0.164 4.164 19 C -0.024 4.024 20 N -0.321 5.321 21 C 0.310 3.690 22 O -0.397 6.397 23 C -0.181 4.181 24 C -0.180 4.180 25 C 0.311 3.689 26 O -0.397 6.397 27 C 0.004 3.996 28 H 0.078 0.922 29 H 0.221 0.779 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.245 0.755 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.061 0.939 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.542 -29.401 7.437 30.434 hybrid contribution -0.114 2.131 -0.060 2.135 sum -2.655 -27.270 7.376 28.375 Atomic orbital electron populations 1.69848 1.07233 1.28447 1.49975 1.25868 0.95758 1.02968 0.93109 0.85494 0.78254 0.78224 0.78973 1.19362 1.21263 1.19422 1.21765 0.93979 0.91154 1.52512 0.91152 1.19875 0.87189 0.93260 0.80548 1.86094 1.51459 1.56795 1.45153 1.22597 0.97178 0.93691 1.01319 1.22136 0.87140 0.95494 0.96794 1.47884 1.24439 1.08728 1.55998 1.15738 0.81275 0.82687 0.79211 1.90849 1.41418 1.64769 1.55675 1.44870 1.29684 1.03587 1.60624 1.21025 0.89012 0.91496 0.96473 1.21880 0.99771 0.92673 1.02067 1.21588 0.99690 0.78010 1.03118 1.46985 1.49524 1.09661 1.25914 1.21774 0.76232 0.91311 0.79638 1.90800 1.37796 1.80717 1.30435 1.22598 1.04752 0.90859 0.99888 1.22601 1.06186 0.89833 0.99419 1.21766 0.74794 0.92296 0.80030 1.90795 1.43793 1.76168 1.28901 1.22670 1.00079 0.77666 0.99143 0.92206 0.77913 0.89513 0.89202 0.89151 0.90900 0.75492 0.92484 0.92014 0.90028 0.90349 0.88647 0.88425 0.83737 0.83688 0.83722 0.83636 0.93872 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.15 10.69 21.45 0.23 -50.92 16 2 C 0.02 1.27 5.29 84.65 0.45 1.72 16 3 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.56 -29.20 8.27 25.60 0.21 -28.98 16 8 H 0.07 3.54 7.79 -2.90 -0.02 3.52 16 9 C 0.23 11.36 0.87 -10.15 -0.01 11.35 16 10 O -0.59 -30.70 13.16 -148.98 -1.96 -32.66 16 11 C -0.11 -4.16 6.13 31.79 0.19 -3.96 16 12 C 0.11 3.48 6.15 86.73 0.53 4.01 16 13 N -0.63 -26.82 3.33 -829.71 -2.76 -29.58 16 14 C 0.71 29.95 8.49 179.06 1.52 31.47 16 15 O -0.64 -33.29 16.60 -4.00 -0.07 -33.36 16 16 N -0.73 -21.94 5.52 -478.54 -2.64 -24.58 16 17 C 0.14 3.70 5.67 86.38 0.49 4.19 16 18 C -0.13 -2.25 5.65 30.59 0.17 -2.08 16 19 C 0.10 1.65 5.56 86.38 0.48 2.13 16 20 N -0.58 -7.95 2.55 -756.66 -1.93 -9.88 16 21 C 0.52 6.54 8.08 87.99 0.71 7.25 16 22 O -0.52 -11.31 17.47 -2.84 -0.05 -11.36 16 23 C -0.14 -0.11 7.03 30.46 0.21 0.11 16 24 C -0.14 -0.08 7.03 30.46 0.21 0.13 16 25 C 0.52 6.36 8.08 87.99 0.71 7.07 16 26 O -0.52 -10.89 17.48 -2.85 -0.05 -10.94 16 27 C 0.13 6.51 5.38 86.85 0.47 6.97 16 28 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.37 20.51 7.56 -74.05 -0.56 19.95 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.09 3.15 8.03 -2.38 -0.02 3.13 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.41 9.66 7.46 -92.71 -0.69 8.97 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.66 7.82 -2.39 -0.02 1.64 16 40 H 0.10 1.65 7.83 -2.39 -0.02 1.63 16 41 H 0.14 -0.42 8.14 -2.38 -0.02 -0.44 16 42 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.14 -0.46 8.14 -2.39 -0.02 -0.48 16 44 H 0.15 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H 0.04 2.53 7.33 -2.39 -0.02 2.51 16 46 H 0.04 2.07 8.03 -2.39 -0.02 2.05 16 Total: -1.00 -81.24 385.05 -1.08 -82.31 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.23 Total: 35.24 kcal Atomic # 6 Polarization: 35.01 SS G_CDS: 6.36 Total: 41.37 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -7.10 Total: -114.96 kcal Atomic # 8 Polarization: -86.20 SS G_CDS: -2.13 Total: -88.32 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -81.24 -1.08 -82.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328130495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.831 kcal (2) G-P(sol) polarization free energy of solvation -81.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds