Wall clock time and date at job start Tue Mar 31 2020 22:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99841 * 2 1 4 4 O 1.20828 * 120.00075 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99983 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.32772 * 59.79282 * 5 3 2 7 7 C 1.53074 * 109.40049 * 179.57129 * 5 3 2 8 8 C 1.53343 * 108.42263 * 169.03174 * 7 5 3 9 9 C 1.53108 * 108.52799 * 292.31036 * 8 7 5 10 10 N 1.45747 * 110.38402 * 51.11845 * 9 8 7 11 11 C 1.46502 * 117.94591 * 160.74111 * 10 9 8 12 12 C 1.50694 * 109.47244 * 269.73704 * 11 10 9 13 13 O 1.20820 * 119.99961 * 359.97438 * 12 11 10 14 14 O 1.34233 * 119.99716 * 179.97438 * 12 11 10 15 15 C 1.45202 * 116.99797 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.46985 * 30.00544 * 15 14 12 17 17 C 1.50694 * 109.47186 * 150.00018 * 15 14 12 18 18 H 1.08002 * 120.00179 * 359.97438 * 17 15 14 19 19 C 1.37879 * 120.00472 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47339 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00306 * 21 19 17 24 24 H 1.48504 * 109.46636 * 59.99865 * 21 19 17 25 25 C 1.52999 * 109.47427 * 270.00418 * 15 14 12 26 26 C 1.52998 * 117.50162 * 128.62177 * 25 15 14 27 27 C 1.52991 * 117.49883 * 59.99548 * 25 15 14 28 28 C 1.33351 * 124.10829 * 340.46290 * 10 9 8 29 29 O 1.21280 * 118.24904 * 182.53025 * 28 10 9 30 30 H 1.09006 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47416 * 299.99523 * 1 2 3 32 32 H 1.09005 * 109.47247 * 60.00290 * 1 2 3 33 33 H 1.08997 * 109.67418 * 288.76824 * 7 5 3 34 34 H 1.08998 * 109.67273 * 49.29659 * 7 5 3 35 35 H 1.08994 * 109.60765 * 52.22936 * 8 7 5 36 36 H 1.09005 * 109.60308 * 172.55327 * 8 7 5 37 37 H 1.08996 * 109.49717 * 290.74159 * 9 8 7 38 38 H 1.09002 * 109.20150 * 171.30401 * 9 8 7 39 39 H 1.09007 * 109.46914 * 149.73483 * 11 10 9 40 40 H 1.09001 * 109.47159 * 29.74085 * 11 10 9 41 41 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 42 42 H 1.09002 * 115.54605 * 274.32763 * 25 15 14 43 43 H 1.09001 * 117.49915 * 359.97438 * 26 25 15 44 44 H 1.08999 * 117.49781 * 145.02234 * 26 25 15 45 45 H 1.09006 * 117.49854 * 214.98143 * 27 25 15 46 46 H 1.09002 * 117.50445 * 0.02562 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9540 0.7768 -0.8881 7 6 3.9984 2.7433 -0.0103 8 6 5.5052 2.8071 0.2672 9 6 5.7535 2.3600 1.7103 10 7 5.0969 1.0843 1.9666 11 6 5.5558 0.2937 3.1115 12 6 6.6562 -0.6367 2.6708 13 8 7.0195 -0.6396 1.5185 14 8 7.2327 -1.4623 3.5585 15 6 8.2855 -2.3311 3.0634 16 1 8.7979 -1.8445 2.2335 17 6 9.2709 -2.6069 4.1697 18 1 9.1212 -2.1723 5.1470 19 6 10.3643 -3.4131 3.9341 20 7 10.5469 -3.9419 2.7438 21 14 11.5861 -3.7544 5.3052 22 1 12.6627 -4.6430 4.7990 23 1 12.1780 -2.4746 5.7707 24 1 10.8885 -4.4175 6.4361 25 6 7.6753 -3.6495 2.5835 26 6 8.0452 -4.1291 1.1785 27 6 6.6438 -3.5813 1.4558 28 6 4.1011 0.5940 1.2275 29 8 3.6002 -0.4579 1.5645 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.7860 3.1811 -0.9857 34 1 3.4593 3.2903 0.7631 35 1 6.0320 2.1455 -0.4203 36 1 5.8587 3.8296 0.1337 37 1 5.3618 3.1110 2.3963 38 1 6.8259 2.2523 1.8728 39 1 4.7240 -0.2890 3.5074 40 1 5.9329 0.9613 3.8863 41 1 11.3163 -4.5089 2.5779 42 1 7.5307 -4.4081 3.3528 43 1 8.7229 -3.5052 0.5959 44 1 8.1440 -5.2035 1.0232 45 1 5.8206 -4.2954 1.4828 46 1 6.4000 -2.5973 1.0553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345974558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:40 Heat of formation + Delta-G solvation = -170.950277 kcal Electronic energy + Delta-G solvation = -30907.221074 eV Core-core repulsion = 26570.605577 eV Total energy + Delta-G solvation = -4336.615497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41873 -40.20475 -39.25134 -37.01893 -36.57891 -36.19597 -34.88338 -34.23231 -32.64133 -30.58656 -28.75739 -27.94346 -27.34372 -25.26871 -23.40114 -22.65187 -21.67284 -21.17647 -20.55200 -19.18709 -18.91804 -18.15979 -17.36453 -17.16844 -17.07731 -16.71759 -16.32887 -15.85353 -15.66334 -15.26466 -14.71860 -14.41776 -14.31181 -14.14733 -13.88477 -13.70596 -13.63129 -13.16972 -12.99584 -12.57382 -12.45573 -12.05756 -12.03630 -11.69890 -11.54642 -11.51789 -11.29761 -11.27390 -11.05496 -10.93623 -10.92163 -10.75474 -10.37306 -10.28457 -9.90840 -9.83078 -9.80052 -9.36851 -9.01724 -8.79470 -8.62353 -8.40787 -6.14595 -4.22876 1.79969 2.21680 2.53919 2.87461 2.95838 3.26575 3.30765 3.32587 3.73334 4.09980 4.20785 4.34754 4.43399 4.45171 4.81018 4.91070 4.92777 5.00434 5.05763 5.09175 5.17311 5.18954 5.29327 5.34120 5.44906 5.51920 5.55437 5.62727 5.68535 5.92213 6.01266 6.12489 6.15397 6.23049 6.43935 6.65447 6.70989 7.04397 7.19609 7.22011 7.29801 7.43208 7.48884 7.63241 7.86250 7.95493 8.12446 8.62602 8.88752 9.41604 10.91953 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.002925 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.164789 B = 9569.025996 C =10268.208565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.332 6.332 3 C 0.483 3.517 4 O -0.505 6.505 5 C -0.097 4.097 6 H 0.143 0.857 7 C -0.107 4.107 8 C -0.135 4.135 9 C 0.110 3.890 10 N -0.581 5.581 11 C 0.112 3.888 12 C 0.441 3.559 13 O -0.512 6.512 14 O -0.352 6.352 15 C 0.252 3.748 16 H 0.047 0.953 17 C -0.529 4.529 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.872 5.872 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.224 4.224 28 C 0.529 3.471 29 O -0.519 6.519 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.264 0.736 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.986 13.273 -5.294 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.247 6.247 3 C 0.325 3.675 4 O -0.394 6.394 5 C -0.119 4.119 6 H 0.160 0.840 7 C -0.145 4.145 8 C -0.172 4.172 9 C -0.012 4.012 10 N -0.315 5.315 11 C -0.012 4.012 12 C 0.282 3.718 13 O -0.402 6.402 14 O -0.267 6.267 15 C 0.199 3.801 16 H 0.065 0.935 17 C -0.567 4.567 18 H 0.086 0.914 19 C -0.135 4.135 20 N -0.508 5.508 21 Si 0.734 3.266 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.134 4.134 26 C -0.161 4.161 27 C -0.261 4.261 28 C 0.315 3.685 29 O -0.394 6.394 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.215 12.830 -5.573 19.943 hybrid contribution 0.711 -0.429 0.430 0.935 sum -13.504 12.401 -5.144 19.042 Atomic orbital electron populations 1.23307 0.76385 1.03950 1.02246 1.86669 1.23087 1.32096 1.82839 1.22857 0.90689 0.81754 0.72220 1.90664 1.66656 1.36388 1.45642 1.21168 0.89550 1.00485 1.00660 0.83965 1.21630 0.96248 0.91916 1.04715 1.21933 0.95565 1.03472 0.96257 1.21578 0.98723 0.83816 0.97126 1.46848 1.34493 1.20681 1.29431 1.20993 0.97069 0.94609 0.88546 1.23667 0.82565 0.80477 0.85088 1.90560 1.61989 1.67704 1.19973 1.86475 1.50520 1.47984 1.41719 1.20188 0.80900 0.82874 0.96098 0.93533 1.20869 1.06612 1.31881 0.97330 0.91365 1.24883 0.97429 0.95116 0.96108 1.70045 1.28792 1.31390 1.20588 0.86417 0.80226 0.78287 0.81649 1.21143 1.20079 1.20008 1.22581 0.99631 1.00388 0.90839 1.22342 0.95171 0.99075 0.99559 1.23239 0.92938 1.02534 1.07381 1.19206 0.80116 0.85366 0.83839 1.90826 1.57807 1.22040 1.68729 0.87892 0.91915 0.91989 0.89580 0.89726 0.89950 0.88791 0.90944 0.89752 0.85660 0.86421 0.92586 0.89409 0.89509 0.90874 0.91064 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.55 101.05 1.07 1.39 16 2 O -0.33 -4.37 9.53 -45.23 -0.43 -4.81 16 3 C 0.48 6.14 7.14 36.01 0.26 6.39 16 4 O -0.51 -6.85 15.54 -18.75 -0.29 -7.15 16 5 C -0.10 -1.10 2.86 -93.14 -0.27 -1.36 16 6 H 0.14 1.43 8.14 -51.93 -0.42 1.01 16 7 C -0.11 -0.90 4.78 -26.52 -0.13 -1.02 16 8 C -0.13 -1.03 6.03 -26.50 -0.16 -1.19 16 9 C 0.11 1.02 6.32 -4.39 -0.03 0.99 16 10 N -0.58 -7.58 2.30 -176.23 -0.41 -7.98 16 11 C 0.11 1.62 5.81 -5.20 -0.03 1.59 16 12 C 0.44 8.80 7.23 36.00 0.26 9.06 16 13 O -0.51 -11.32 13.47 -18.74 -0.25 -11.57 16 14 O -0.35 -8.16 9.85 -39.27 -0.39 -8.55 16 15 C 0.25 6.59 2.25 -27.89 -0.06 6.53 16 16 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 17 C -0.53 -14.55 8.87 -34.44 -0.31 -14.85 16 18 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 19 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 20 N -0.87 -24.13 11.44 55.43 0.63 -23.50 16 21 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.12 -2.90 4.47 -90.63 -0.41 -3.30 16 26 C -0.12 -2.94 9.05 -26.73 -0.24 -3.19 16 27 C -0.22 -5.11 9.80 -26.74 -0.26 -5.37 16 28 C 0.53 7.66 7.01 -11.87 -0.08 7.58 16 29 O -0.52 -9.40 14.82 -11.61 -0.17 -9.57 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.73 7.72 -51.93 -0.40 0.33 16 35 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.13 1.85 7.13 -51.92 -0.37 1.48 16 40 H 0.12 1.28 8.01 -51.93 -0.42 0.86 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.09 2.28 8.11 -51.93 -0.42 1.85 16 43 H 0.09 2.18 8.05 -51.93 -0.42 1.76 16 44 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 45 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.09 2.23 5.37 -51.93 -0.28 1.95 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -34.26 382.21 -7.90 -42.17 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.86 Total: 4.42 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -0.48 Total: 5.02 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.23 Total: -31.48 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.53 Total: -41.64 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.26 -7.90 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345974558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.784 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds