Wall clock time and date at job start Tue Mar 31 2020 22:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09000 * 109.39835 * 299.89383 * 5 3 2 7 7 C 1.53066 * 109.40410 * 180.14723 * 5 3 2 8 8 C 1.53328 * 108.43948 * 190.97546 * 7 5 3 9 9 C 1.52924 * 108.68136 * 67.50644 * 8 7 5 10 10 N 1.45746 * 110.49438 * 309.26058 * 9 8 7 11 11 C 1.46498 * 117.95187 * 199.07276 * 10 9 8 12 12 C 1.50694 * 109.47449 * 270.02171 * 11 10 9 13 13 O 1.20834 * 119.99793 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00116 * 179.97438 * 12 11 10 15 15 C 1.45201 * 116.99985 * 179.97438 * 14 12 11 16 16 H 1.09006 * 109.46795 * 329.99769 * 15 14 12 17 17 C 1.50696 * 109.47220 * 209.99819 * 15 14 12 18 18 H 1.07997 * 119.99838 * 359.97438 * 17 15 14 19 19 C 1.37878 * 120.00090 * 179.97438 * 17 15 14 20 20 N 1.31508 * 120.00054 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99984 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46680 * 60.00483 * 21 19 17 23 23 H 1.48499 * 109.47314 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47296 * 300.00555 * 21 19 17 25 25 C 1.52997 * 109.47181 * 89.99657 * 15 14 12 26 26 C 1.52999 * 117.50050 * 8.61931 * 25 15 14 27 27 C 1.52993 * 60.00173 * 252.50933 * 26 25 15 28 28 C 1.33358 * 124.10403 * 19.09450 * 10 9 8 29 29 O 1.21285 * 118.24616 * 177.76150 * 28 10 9 30 30 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 31 31 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 32 32 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.67482 * 310.70662 * 7 5 3 34 34 H 1.09007 * 109.67113 * 71.24058 * 7 5 3 35 35 H 1.09004 * 109.59254 * 307.75981 * 8 7 5 36 36 H 1.08995 * 109.74139 * 187.35458 * 8 7 5 37 37 H 1.08997 * 109.30234 * 188.94144 * 9 8 7 38 38 H 1.09008 * 109.13240 * 69.46545 * 9 8 7 39 39 H 1.09005 * 109.46792 * 30.01841 * 11 10 9 40 40 H 1.08998 * 109.47197 * 150.01624 * 11 10 9 41 41 H 0.96996 * 120.00046 * 179.97438 * 20 19 17 42 42 H 1.09000 * 115.54987 * 154.33236 * 25 15 14 43 43 H 1.09000 * 117.49579 * 0.02562 * 26 25 15 44 44 H 1.09006 * 117.49625 * 145.01871 * 26 25 15 45 45 H 1.09003 * 117.50101 * 252.50601 * 27 26 25 46 46 H 1.09002 * 117.49606 * 107.48760 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9584 0.7803 0.8824 7 6 3.9984 2.7434 -0.0012 8 6 5.5040 2.8068 -0.2844 9 6 5.7512 2.3524 -1.7235 10 7 5.0901 1.0785 -1.9771 11 6 5.5451 0.2845 -3.1211 12 6 4.7553 0.6692 -4.3455 13 8 3.8998 1.5192 -4.2702 14 8 5.0023 0.0677 -5.5198 15 6 4.2029 0.4881 -6.6567 16 1 3.2210 0.8112 -6.3108 17 6 4.0439 -0.6657 -7.6131 18 1 4.4986 -1.6193 -7.3890 19 6 3.3180 -0.5038 -8.7740 20 7 2.7647 0.6576 -9.0471 21 14 3.1215 -1.9337 -9.9598 22 1 2.4456 -3.0608 -9.2683 23 1 2.3038 -1.5039 -11.1225 24 1 4.4593 -2.3731 -10.4314 25 6 4.9000 1.6487 -7.3692 26 6 6.3208 2.0003 -6.9233 27 6 5.1551 2.9227 -6.5613 28 6 4.0966 0.5905 -1.2332 29 8 3.5949 -0.4627 -1.5651 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.4565 3.2881 -0.7743 34 1 3.7896 3.1840 0.9738 35 1 6.0334 2.1472 0.4033 36 1 5.8598 3.8292 -0.1574 37 1 6.8231 2.2409 -1.8870 38 1 5.3588 3.1045 -2.4081 39 1 6.6039 0.4745 -3.2972 40 1 5.3961 -0.7745 -2.9106 41 1 2.2544 0.7716 -9.8640 42 1 4.6613 1.7627 -8.4266 43 1 6.7589 1.4044 -6.1227 44 1 7.0172 2.3455 -7.6876 45 1 5.0846 3.8749 -7.0872 46 1 4.8263 2.9340 -5.5221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345974561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:44 Heat of formation + Delta-G solvation = -169.483260 kcal Electronic energy + Delta-G solvation = -31133.027735 eV Core-core repulsion = 26796.475853 eV Total energy + Delta-G solvation = -4336.551882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38090 -40.17309 -39.34382 -36.96975 -36.63147 -36.22081 -34.74475 -34.22980 -32.80283 -30.60439 -28.78289 -27.85175 -27.37638 -25.24369 -23.45735 -22.68720 -21.66051 -21.47070 -20.72470 -19.14004 -18.74013 -18.10019 -17.27213 -17.14427 -17.08645 -16.67103 -16.34577 -16.04886 -15.56584 -15.33056 -14.87080 -14.51797 -14.37389 -13.97618 -13.90851 -13.75232 -13.60563 -13.05642 -12.97766 -12.50289 -12.38482 -12.09228 -11.94444 -11.77923 -11.57033 -11.50049 -11.39438 -11.29717 -11.10615 -10.93462 -10.81010 -10.65754 -10.57631 -10.30597 -10.09696 -9.93383 -9.83659 -9.51780 -9.15605 -8.81928 -8.54118 -8.43505 -6.17700 -4.24770 1.83110 2.31921 2.69806 2.76147 2.94244 3.28061 3.31455 3.33992 3.73042 4.10322 4.21975 4.34632 4.41039 4.44088 4.82384 4.85438 4.89984 5.02313 5.04886 5.13319 5.15225 5.15669 5.23918 5.44304 5.47397 5.49918 5.55288 5.61337 5.63754 5.82080 5.91640 6.04444 6.09405 6.15805 6.27175 6.41065 6.63856 6.88408 6.96799 7.18364 7.19157 7.56460 7.59562 7.60013 7.84986 7.95454 8.12080 8.60691 8.87427 9.39593 10.89531 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.003486 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.454997 B = 8029.601944 C = 9217.583166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.335 6.335 3 C 0.481 3.519 4 O -0.500 6.500 5 C -0.093 4.093 6 H 0.140 0.860 7 C -0.111 4.111 8 C -0.131 4.131 9 C 0.106 3.894 10 N -0.581 5.581 11 C 0.113 3.887 12 C 0.437 3.563 13 O -0.508 6.508 14 O -0.351 6.351 15 C 0.250 3.750 16 H 0.051 0.949 17 C -0.518 4.518 18 H 0.070 0.930 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.910 3.090 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.115 4.115 26 C -0.193 4.193 27 C -0.210 4.210 28 C 0.526 3.474 29 O -0.517 6.517 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.267 0.733 42 H 0.129 0.871 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 3.503 19.852 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.250 6.250 3 C 0.322 3.678 4 O -0.388 6.388 5 C -0.115 4.115 6 H 0.158 0.842 7 C -0.149 4.149 8 C -0.169 4.169 9 C -0.016 4.016 10 N -0.315 5.315 11 C -0.011 4.011 12 C 0.278 3.722 13 O -0.397 6.397 14 O -0.267 6.267 15 C 0.197 3.803 16 H 0.069 0.931 17 C -0.556 4.556 18 H 0.088 0.912 19 C -0.138 4.138 20 N -0.524 5.524 21 Si 0.737 3.263 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.134 4.134 26 C -0.230 4.230 27 C -0.247 4.247 28 C 0.312 3.688 29 O -0.392 6.392 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.076 0.924 42 H 0.147 0.853 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.569 3.581 19.508 20.601 hybrid contribution -0.421 -0.321 -0.831 0.985 sum 5.149 3.260 18.677 19.646 Atomic orbital electron populations 1.23313 0.76213 1.03928 1.02406 1.86615 1.23261 1.32097 1.82995 1.22768 0.90644 0.81872 0.72479 1.90682 1.66557 1.36388 1.45148 1.21109 0.89955 1.00339 1.00104 0.84235 1.21643 0.96179 0.92182 1.04886 1.21885 0.95809 1.03382 0.95793 1.21603 0.97783 0.84904 0.97359 1.46835 1.35866 1.21536 1.27225 1.21005 0.98479 0.99103 0.82503 1.23730 0.82449 0.79835 0.86149 1.90593 1.31952 1.31279 1.85897 1.86476 1.61120 1.61044 1.18052 1.20121 0.88968 0.92701 0.78462 0.93150 1.20916 1.33692 0.96753 1.04266 0.91174 1.24898 0.94834 0.96509 0.97579 1.69967 1.33533 1.22986 1.25864 0.86360 0.78352 0.81819 0.79788 1.19923 1.21063 1.19886 1.23026 0.94862 0.93760 1.01727 1.22773 0.92456 1.04314 1.03478 1.23123 1.04325 0.95388 1.01845 1.19260 0.79748 0.85646 0.84109 1.90840 1.55603 1.22756 1.70009 0.92039 0.91678 0.87901 0.89313 0.89545 0.90512 0.88694 0.89830 0.90581 0.86488 0.85657 0.92362 0.85286 0.89888 0.90423 0.90581 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.33 -4.89 9.52 -45.27 -0.43 -5.32 16 3 C 0.48 6.93 7.15 36.00 0.26 7.18 16 4 O -0.50 -8.04 15.54 -18.76 -0.29 -8.33 16 5 C -0.09 -1.06 2.86 -93.14 -0.27 -1.32 16 6 H 0.14 1.10 8.14 -51.93 -0.42 0.67 16 7 C -0.11 -1.01 4.78 -26.53 -0.13 -1.13 16 8 C -0.13 -0.84 6.02 -26.60 -0.16 -1.00 16 9 C 0.11 0.98 6.39 -4.49 -0.03 0.95 16 10 N -0.58 -7.60 2.30 -176.34 -0.41 -8.01 16 11 C 0.11 1.64 5.79 -5.20 -0.03 1.61 16 12 C 0.44 8.94 6.96 36.00 0.25 9.19 16 13 O -0.51 -11.82 13.47 -18.76 -0.25 -12.08 16 14 O -0.35 -8.18 8.39 -39.25 -0.33 -8.51 16 15 C 0.25 6.67 2.41 -27.89 -0.07 6.60 16 16 H 0.05 1.53 7.16 -51.93 -0.37 1.16 16 17 C -0.52 -14.58 8.90 -34.44 -0.31 -14.88 16 18 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 19 C 0.06 1.78 5.20 -17.82 -0.09 1.69 16 20 N -0.89 -25.26 11.59 55.43 0.64 -24.62 16 21 Si 0.91 21.21 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.12 -2.83 5.28 -90.62 -0.48 -3.31 16 26 C -0.19 -3.92 9.79 -26.74 -0.26 -4.18 16 27 C -0.21 -4.48 9.85 -26.73 -0.26 -4.75 16 28 C 0.53 7.74 7.01 -11.87 -0.08 7.66 16 29 O -0.52 -9.67 14.85 -11.73 -0.17 -9.85 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.04 7.72 -51.93 -0.40 0.64 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 38 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.12 1.23 7.86 -51.93 -0.41 0.82 16 40 H 0.13 1.83 7.20 -51.93 -0.37 1.45 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.13 3.48 6.46 -51.93 -0.34 3.14 16 43 H 0.08 1.60 6.90 -51.93 -0.36 1.24 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.09 2.02 5.37 -51.93 -0.28 1.74 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -36.01 379.54 -7.84 -43.86 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.71 Total: 5.18 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -0.59 Total: 5.77 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.24 Total: -32.62 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -1.48 Total: -44.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.01 -7.84 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345974561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.628 kcal (2) G-P(sol) polarization free energy of solvation -36.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds